Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G05130 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 1.8e-244 849.4 635 100.0
AL3G15510 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 2.8e-192 676.0 636 76.9
Carub.0003s0437 Capsella rubella HOM05D004923 ORTHO05D005940 2.6e-150 536.6 635 67.7
Sp3g03950 Schrenkiella parvula HOM05D004923 ORTHO05D005940 1.1e-148 531.2 635 62.2
CARHR185930 Cardamine hirsuta HOM05D004923 ORTHO05D005940 1.0e-101 375.2 635 47.4
C05p62100 Brassica napus HOM05D004923 ORTHO05D005940 1.6e-91 341.3 637 45.5
BolC5t34868H Brassica oleracea HOM05D004923 ORTHO05D005940 1.6e-91 341.3 637 45.5
Sp2g20550 Schrenkiella parvula HOM05D004923 ORTHO05D005940 7.3e-84 315.8 635 43.1
BcaNung04359 Brassica carinata HOM05D004923 ORTHO05D005940 1.1e-82 312.0 636 45.6
Carub.0006s2521 Capsella rubella HOM05D004923 ORTHO05D005940 1.4e-82 311.6 635 46.8
Thhalv10003823m.g Eutrema salsugineum HOM05D004923 ORTHO05D005940 1.6e-75 288.1 635 44.7
AT5G27330 Arabidopsis thaliana HOM05D004923 ORTHO05D005940 2.8e-75 287.3 635 37.6
BraA05t23008Z Brassica rapa HOM05D004923 ORTHO05D005940 8.1e-75 285.8 636 41.2
AL6G39740 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 4.9e-72 276.6 635 42.8
A05p42440 Brassica napus HOM05D004923 ORTHO05D005940 4.9e-72 276.6 636 47.0
THA.LOC104818671 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 7.3e-68 262.7 635 36.4
Aa31LG11G9060 Aethionema arabicum HOM05D004923 ORTHO05D005940 6.2e-67 259.6 635 48.8
CARHR079450 Cardamine hirsuta HOM05D004923 ORTHO05D005940 7.6e-65 252.7 634 46.7
THA.LOC104821702 Tarenaya hassleriana HOM05D004923 ORTHO05D005940 8.4e-64 249.2 632 42.9
C07p40590 Brassica napus HOM05D004923 ORTHO05D005940 1.9e-63 248.1 636 35.4
BcaNung02477 Brassica carinata HOM05D004923 ORTHO05D005940 5.4e-63 246.5 636 38.5
Gohir.A08G212800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 3.2e-55 220.7 654 36.9
BcaC05g29999 Brassica carinata HOM05D004923 ORTHO05D005940 9.3e-55 219.2 621 43.8
AL3G15330 Arabidopsis lyrata HOM05D004923 ORTHO05D005940 3.9e-53 213.8 449 43.0
Haze_04263 Corylus avellana HOM05D004923 ORTHO05D005940 5.3e-50 203.4 600 33.7
Cfa006523 Carpinus fangiana HOM05D004923 ORTHO05D005940 1.6e-46 191.8 645 31.0
BolC7t44596H Brassica oleracea HOM05D004923 ORTHO05D005940 6.7e-45 186.4 636 37.6
Thecc.05G297900 Theobroma cacao HOM05D004923 ORTHO05D005940 6.7e-45 186.4 674 38.6
CiPaw.07G012700 Carya illinoinensis HOM05D004923 ORTHO05D005940 5.7e-44 183.3 645 34.1
Ciclev10000602m.g Citrus clementina HOM05D004923 ORTHO05D005940 4.8e-43 180.3 638 33.4
Actinidia19810 Actinidia chinensis HOM05D004923 ORTHO05D005940 8.2e-43 179.5 642 34.1
Gorai.004G244000 Gossypium raimondii HOM05D004923 ORTHO05D005940 8.2e-43 179.5 667 35.2
Gohir.D08G229800 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.8e-42 178.3 667 35.1
Duzib177G0588 Durio zibethinus HOM05D004923 ORTHO05D005940 9.0e-42 176.0 670 38.7
Hma1.2p1_0702F.1_g206060 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 5.9e-41 173.3 622 29.7
Hma1.2p1_2453F.1_g322410 Hydrangea macrophylla HOM05D004923 ORTHO05D005940 5.0e-40 170.2 626 30.4
Manes.09G161700 Manihot esculenta HOM05D004923 ORTHO05D005940 2.5e-39 167.9 638 32.3
CSS0000935 Camellia sinensis var. sinensis HOM05D004923 ORTHO05D005940 1.4e-37 162.2 627 32.5
TWI56G0946 Tripterygium wilfordii HOM05D004923 ORTHO05D005940 2.0e-36 158.3 635 29.9
MSTRG.12109 Avicennia marina HOM05D004923 ORTHO05D005940 2.8e-35 154.5 650 27.1
Sabra05G0039600 Salix brachista HOM05D004923 ORTHO05D005940 3.7e-35 154.1 591 28.1
A06p37630 Brassica napus HOM05D004923 ORTHO05D005940 3.8e-32 144.1 636 33.5
QL03p003582 Quercus lobata HOM05D004923 ORTHO05D005940 1.1e-31 142.5 646 33.0
Rhsim05G0146200 Rhododendron simsii HOM05D004923 ORTHO05D005940 4.2e-31 140.6 624 36.1
Sopen01g053000 Solanum pennellii HOM05D004923 ORTHO05D005940 4.2e-31 140.6 678 26.3
BcaC01g00704 Brassica carinata HOM05D004923 ORTHO05D032366 7.2e-31 139.8 300 40.3
BolC3t20618H Brassica oleracea HOM05D004923 ORTHO05D032366 7.2e-31 139.8 300 40.3
QL03p002854 Quercus lobata HOM05D004923 ORTHO05D005940 7.2e-31 139.8 646 31.9
Lalb_Chr02g0148481 Lupinus albus HOM05D004923 ORTHO05D005940 4.7e-30 137.1 599 26.4
Potri.013G028600 Populus trichocarpa HOM05D004923 ORTHO05D005940 7.9e-30 136.3 636 32.9
SGA_v2.0_scaffold104G30165 Striga asiatica HOM05D004923 ORTHO05D005940 1.0e-29 136.0 648 26.7
PGR083G0910 Punica granatum HOM05D004923 ORTHO05D005940 8.8e-29 132.9 593 35.1
Prupe.6G332700 Prunus persica HOM05D004923 ORTHO05D005940 2.0e-28 131.7 638 32.6
Sed0008414 Sechium edule HOM05D004923 ORTHO05D005940 2.8e-27 127.9 635 26.9
Dinv40234 Davidia involucrata HOM05D004923 ORTHO05D005940 4.8e-27 127.1 599 24.5
Cpa.g.sc84.119 Carica papaya HOM05D004923 ORTHO05D005940 1.8e-26 125.2 502 31.7
Cc02_g32730 Coffea canephora HOM05D004923 ORTHO05D005940 3.1e-26 124.4 658 29.3
Eucgr.B02029 Eucalyptus grandis HOM05D004923 ORTHO05D005940 7.0e-26 123.2 642 27.7
Solyc01g110960.4 Solanum lycopersicum HOM05D004923 ORTHO05D005940 2.0e-25 121.7 609 24.8
TAR362G1085 Trochodendron aralioides HOM05D004923 ORTHO05D005940 7.7e-25 119.8 498 25.3
arahy.Tifrunner.gnm1.ann1.96LETV Arachis hypogaea HOM05D004923 ORTHO05D005940 2.9e-24 117.9 619 25.5
BraA06t26683Z Brassica rapa HOM05D004923 ORTHO05D005940 3.8e-24 117.5 693 29.9
MELO3C004316.2 Cucumis melo HOM05D004923 ORTHO05D005940 1.1e-23 115.9 640 24.7
Sabra13G0028900 Salix brachista HOM05D004923 ORTHO05D005940 3.6e-22 110.9 636 29.2
CANSAT54G1324 Cannabis sativa HOM05D004923 ORTHO05D005940 4.7e-22 110.5 758 32.5
SalBow6G2889 Salvia bowleyana HOM05D004923 ORTHO05D005940 8.0e-22 109.8 648 27.6
Gohir.A11G260600 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.0e-21 109.4 648 28.5
ClCG02G016160 Citrullus lanatus HOM05D004923 ORTHO05D005940 1.8e-21 108.6 640 23.1
COL.COLO4_13559 Corchorus olitorius HOM05D004923 ORTHO05D005940 3.9e-21 107.5 205 37.1
MD12G1227100 Malus domestica HOM05D004923 ORTHO05D005940 5.2e-21 107.1 300 31.7
Potri.005G040500 Populus trichocarpa HOM05D004923 ORTHO05D005940 6.7e-21 106.7 582 37.5
CiPaw.08G168100 Carya illinoinensis HOM05D004923 ORTHO05D005940 1.5e-20 105.5 227 31.7
GSVIVG01022015001 Vitis vinifera HOM05D004923 ORTHO05D005940 4.4e-20 104.0 641 30.4
Glyma.10G157900 Glycine max HOM05D004923 ORTHO05D005940 1.7e-19 102.1 640 24.2
Oeu020434.1 Olea europaea HOM05D004923 ORTHO05D005940 2.2e-19 101.7 648 29.8
Atru.chr5.1952 Acer truncatum HOM05D000107 ORTHO05D000062 2.8e-19 101.3 229 32.8
Glyma.20G230700 Glycine max HOM05D004923 ORTHO05D005940 1.8e-18 98.6 610 30.7
PGSC0003DMG400001646 Solanum tuberosum HOM05D004923 ORTHO05D005940 9.1e-18 96.3 675 27.9
Gohir.D11G270900 Gossypium hirsutum HOM05D004923 ORTHO05D005940 1.2e-17 95.9 667 30.3
MBI18_g16961_MAGBIO Magnolia biondii HOM05D004923 ORTHO05D005940 1.6e-17 95.5 666 27.9
FAN09G1938 Fragaria x ananassa HOM05D004923 ORTHO05D005940 5.9e-17 93.6 662 36.7
HanXRQChr05g0158391 Helianthus annuus HOM05D004923 ORTHO05D005940 1.3e-16 92.4 657 27.5
CARHR162300 Cardamine hirsuta HOM05D004923 ORTHO05D005940 1.7e-16 92.0 80 65.0
Sc06g0003440 Simmondsia chinensis HOM05D004923 ORTHO05D005940 3.8e-16 90.9 667 23.7
Gorai.007G291400 Gossypium raimondii HOM05D004923 ORTHO05D005940 8.5e-16 89.7 671 31.3
Manes.08G124600 Manihot esculenta HOM05D004923 ORTHO05D005940 1.9e-15 88.6 227 33.0
Atru.chr2.532 Acer truncatum HOM05D004923 ORTHO05D005940 2.5e-15 88.2 695 32.5
AUR62000899 Chenopodium quinoa HOM05D004923 ORTHO05D005940 4.2e-15 87.4 622 26.4
MD04G1212300 Malus domestica HOM05D004923 ORTHO05D005940 1.6e-14 85.5 238 32.4
AUR62005075 Chenopodium quinoa HOM05D004923 ORTHO05D005940 2.7e-14 84.7 625 25.8
CsaV3_2G004820 Cucumis sativus L. HOM05D004923 ORTHO05D005940 2.7e-14 84.7 347 32.9
FAN14G0846 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.4e-13 82.4 640 33.8
FAN05G5260 Fragaria x ananassa HOM05D004923 ORTHO05D005940 2.3e-13 81.6 665 36.5
RcHm_v2.0_Chr3g0453461 Rosa chinensis HOM05D004923 ORTHO05D005940 5.2e-13 80.5 636 31.6
Nn4g26097 Nelumbo nucifera HOM05D004923 ORTHO05D005940 1.2e-12 79.3 506 22.7
FvH4_6g04961 Fragaria vesca HOM05D004923 ORTHO05D005940 2.0e-12 78.6 665 36.4
arahy.Tifrunner.gnm1.ann1.VPW6I2 Arachis hypogaea HOM05D004923 ORTHO05D005940 1.7e-11 75.5 636 26.3
Lj9P678T27 Lonicera japonica HOM05D004923 ORTHO05D005940 8.3e-11 73.2 455 23.5
Oeu019603.1 Olea europaea HOM05D004923 ORTHO05D005940 8.3e-11 73.2 311 36.0
PSO170G6876 Papaver somniferum HOM05D004923 ORTHO05D005940 8.3e-11 73.2 114 44.7
FAN05G2617 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.1e-10 72.8 665 36.5
FAN02G0211 Fragaria x ananassa HOM05D004923 ORTHO05D005940 1.8e-10 72.0 665 32.8
Nitab4.5_0000003g0420 Nicotiana tabacum HOM05D004923 ORTHO05D005940 3.1e-10 71.2 94 42.6
PSO302G0039 Papaver somniferum HOM05D004923 ORTHO05D005940 3.1e-10 71.2 112 43.8
Nitab4.5_0008768g0010 Nicotiana tabacum HOM05D004923 ORTHO05D005940 5.3e-10 70.5 94 42.6
Lj5g0013750 Lotus japonicus HOM05D004923 ORTHO05D005940 7.0e-10 70.1 713 26.4
Phvul.007G183300 Phaseolus vulgaris HOM05D004923 ORTHO05D005940 1.2e-09 69.3 340 29.1
VMungo0720G2495 Vigna mungo HOM05D004923 ORTHO05D005940 1.2e-09 69.3 102 39.2
Migut.A01112 Erythranthe guttata HOM05D004923 ORTHO05D005940 1.0e-08 66.2 653 29.9
TPR.G2744 Trifolium pratense HOM05D004923 ORTHO05D005940 1.9e-07 62.0 109 36.7
Psat6g148400 Pisum sativum HOM05D004923 ORTHO05D005940 1.2e-06 59.3 110 37.3
arahy.Tifrunner.gnm1.ann1.S9CKM7 Arachis hypogaea HOM05D004923 ORTHO05D005940 2.1e-06 58.5 591 25.4
PSO151G0007 Papaver somniferum HOM05D004923 ORTHO05D005940 3.6e-06 57.8 226 27.9
PSO151G0141 Papaver somniferum HOM05D004923 ORTHO05D005940 3.6e-06 57.8 226 27.9
Ca_10079_v3 Cicer arietinum L. HOM05D004923 ORTHO05D005940 4.7e-06 57.4 113 35.4
CDE09G0746 Ceratophyllum demersum HOM05D056443 ORTHO05D005940 8.0e-06 56.6 224 28.6


User provided reference genes

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