Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 2334.3 1203 100.0
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 2255.7 1203 95.1
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 2088.9 1195 88.9
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 2055.4 1179 88.5
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1914.4 1186 80.9
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1887.8 1188 79.8
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1879.4 1185 79.6
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1875.5 1190 79.6
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1873.2 1190 79.6
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1872.8 1191 79.3
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1872.4 1185 79.4
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1869.4 1187 79.0
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1864.4 1121 85.2
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1860.5 1188 78.5
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1833.5 1185 78.1
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1664.4 1186 70.4
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1663.7 1188 70.3
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1647.5 1195 69.9
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1637.5 1194 69.4
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1634.0 1189 69.2
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1627.8 1190 69.2
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1617.8 1190 71.8
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1606.3 1193 68.1
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1603.2 1191 67.8
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1602.4 1194 67.5
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1599.3 1195 67.9
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1595.9 1196 68.6
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1592.8 1196 68.3
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1591.6 1190 67.3
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1590.5 1192 68.1
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1585.9 1190 67.9
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1585.5 1193 68.7
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1577.0 1196 68.0
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1576.2 1193 67.5
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1569.7 1182 66.8
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1568.5 1197 66.7
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1565.8 1186 66.9
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1564.7 1192 65.5
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1562.7 1189 66.6
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1547.3 1192 66.3
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1545.8 1190 65.9
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1543.9 1190 65.8
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1543.1 1192 66.7
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1540.0 1198 66.1
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1538.5 1182 65.1
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1537.3 1183 65.6
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1536.9 1183 65.8
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1533.1 1191 65.4
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1531.5 1193 65.1
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1531.5 1190 65.5
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1530.8 1183 65.6
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1528.1 887 87.8
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1526.5 1156 67.4
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1522.3 1193 64.8
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1522.3 1191 65.0
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1516.1 1181 64.9
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1513.0 1185 64.0
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1511.9 1193 64.6
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1508.8 1178 65.2
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1508.4 1183 65.2
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1505.7 1190 64.6
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1501.9 1208 63.8
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 1496.5 1189 64.3
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1494.2 1192 64.0
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 1493.0 1185 64.4
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1491.9 1195 63.8
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 1487.6 1199 63.6
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1474.5 1192 62.6
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1473.4 1197 63.0
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1471.1 1186 63.4
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1470.3 1188 63.3
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1468.4 1192 61.8
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1463.4 1192 63.1
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1462.2 1193 61.7
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1457.6 1193 62.3
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1453.3 1194 62.1
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1450.3 1191 61.0
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1449.1 1153 64.2
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1448.3 1195 62.6
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1446.4 1188 62.8
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1439.1 1182 61.9
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1429.8 1187 61.2
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1422.9 1195 62.5
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1422.9 1190 60.8
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1421.8 1195 60.7
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1419.8 1187 61.1
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1414.1 1203 60.5
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1411.7 1190 60.2
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1404.4 1120 63.6
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1397.9 1190 61.8
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1356.3 1246 57.4
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1345.5 1192 59.2
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1332.4 1199 57.8
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1317.8 1122 59.4
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1288.5 1184 56.9
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1280.4 1277 54.7
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1274.2 985 66.1
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1271.9 1185 55.1
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1266.5 1172 55.5
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1252.3 1026 62.7
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1238.4 1203 53.3
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1151.3 1041 58.5
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1104.7 1052 60.6
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 7.6e-308 1060.8 963 58.5
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 1.1e-301 1040.4 822 66.3
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 2.3e-296 1022.7 805 64.5
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 9.4e-282 974.2 1186 47.5
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 1.1e-277 960.7 1153 47.8
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 4.8e-270 935.3 1181 46.4
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 3.5e-268 929.1 1181 46.1
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 1.7e-267 926.8 1173 47.1
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 8.8e-256 887.9 1216 41.5
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 5.7e-255 885.2 1198 41.1
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 7.7e-252 874.8 1213 42.2
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 3.7e-238 829.3 1181 39.3
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 4.1e-229 799.3 633 64.3
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.2e-204 718.0 795 50.1
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 4.5e-199 699.5 1211 35.8
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.5e-188 663.3 552 60.5
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 5.3e-184 649.4 600 58.3
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 5.0e-174 616.3 521 59.3
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.3e-170 603.6 637 49.8
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 2.1e-164 584.3 416 69.0
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 5.5e-141 506.5 471 58.4
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.2e-130 472.2 491 50.1
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 5.6e-109 400.2 306 66.0
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 1.7e-97 362.1 282 66.3
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 1.1e-72 279.6 210 66.2
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 2.5e-72 278.5 269 50.6
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 5.6e-69 267.3 210 66.2
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 1.5e-61 242.7 172 73.3
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 1.4e-56 226.1 213 58.2
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 2.4e-51 208.8 507 29.8
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.2e-50 206.5 472 32.4
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 1.9e-40 172.6 409 29.6
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 1.8e-38 166.0 1270 21.2
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 5.9e-34 151.0 109 67.9
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 2.2e-25 122.5 96 62.5
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 4.0e-22 111.7 81 72.8
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 7.0e-19 100.9 63 82.5
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 4.5e-18 98.2 72 76.4
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 2.5e-16 92.4 79 59.5
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 2.5e-16 92.4 75 60.0
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 7.2e-16 90.9 63 73.0
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 2.1e-15 89.4 63 71.4
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 1.2e-13 83.6 291 26.1
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 3.4e-13 82.0 72 55.6
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 4.4e-13 81.6 76 53.9
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 4.4e-13 81.6 124 39.5
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 1.2e-10 73.6 50 74.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 1.2e-10 73.6 50 74.0
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 1.9e-08 66.2 88 45.5
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.9e-08 66.2 71 47.9
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 1.6e-07 63.2 194 27.3


User provided reference genes

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