Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G05035 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 1.8e-23 111.7 55 100.0
Aa31LG5G14930 Aethionema arabicum HOM05D000329 ORTHO05D005330 1.9e-12 75.1 39 94.9
AT3G04490 Arabidopsis thaliana HOM05D000329 ORTHO05D005330 1.9e-12 75.1 39 94.9
AL3G14470 Arabidopsis lyrata HOM05D000329 ORTHO05D005330 4.2e-12 73.9 39 92.3
Carub.0003s0365 Capsella rubella HOM05D000329 ORTHO05D005330 4.2e-12 73.9 39 92.3
Thhalv10019943m.g Eutrema salsugineum HOM05D000329 ORTHO05D005330 2.7e-11 71.2 39 87.2
BcaC05g30221 Brassica carinata HOM05D000329 ORTHO05D005330 4.6e-11 70.5 39 84.6
A05p42990 Brassica napus HOM05D000329 ORTHO05D005330 6.1e-11 70.1 39 84.6
C05p62760 Brassica napus HOM05D000329 ORTHO05D005330 6.1e-11 70.1 39 84.6
BolC5t34929H Brassica oleracea HOM05D000329 ORTHO05D005330 6.1e-11 70.1 39 84.6
BraA05t23043Z Brassica rapa HOM05D000329 ORTHO05D005330 6.1e-11 70.1 39 84.6
Sp3g03340 Schrenkiella parvula HOM05D000329 ORTHO05D005330 2.3e-10 68.2 38 84.2
BcaC05g30194 Brassica carinata HOM05D000329 ORTHO05D005330 1.1e-09 65.9 36 86.1
Cfa006349 Carpinus fangiana HOM05D000329 ORTHO05D005330 1.1e-09 65.9 39 82.1
Duzib177G0982 Durio zibethinus HOM05D000329 ORTHO05D005330 1.9e-09 65.1 39 82.1
THA.LOC104827286 Tarenaya hassleriana HOM05D000329 ORTHO05D005330 1.9e-09 65.1 39 84.6
CiPaw.08G118500 Carya illinoinensis HOM05D000329 ORTHO05D005330 2.5e-09 64.7 39 79.5
Atru.chr2.977 Acer truncatum HOM05D000329 ORTHO05D005330 3.3e-09 64.3 39 79.5
Gohir.A08G217300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 4.3e-09 63.9 39 79.5
Gohir.D08G234300 Gossypium hirsutum HOM05D000329 ORTHO05D005330 4.3e-09 63.9 39 79.5
Gorai.004G249100 Gossypium raimondii HOM05D000329 ORTHO05D005330 4.3e-09 63.9 39 79.5
Potri.019G019100 Populus trichocarpa HOM05D000329 ORTHO05D005330 4.3e-09 63.9 39 76.9
Sabra19G0031800 Salix brachista HOM05D000329 ORTHO05D005330 4.3e-09 63.9 39 76.9
Dinv06015 Davidia involucrata HOM05D000329 ORTHO05D005330 5.7e-09 63.5 39 79.5
Thecc.05G271000 Theobroma cacao HOM05D000329 ORTHO05D005330 5.7e-09 63.5 39 79.5
HanXRQChr13g0397671 Helianthus annuus HOM05D000329 ORTHO05D005330 7.4e-09 63.2 39 76.9
Atru.chr2.952 Acer truncatum HOM05D000329 ORTHO05D005330 1.3e-08 62.4 39 76.9
CSS0000359 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 1.6e-08 62.0 38 78.9
CSS0019027 Camellia sinensis var. sinensis HOM05D000329 ORTHO05D005330 1.6e-08 62.0 38 78.9
ECA238G1533 Erigeron canadensis HOM05D000329 ORTHO05D005330 1.6e-08 62.0 39 74.4
Actinidia39997 Actinidia chinensis HOM05D000329 ORTHO05D005330 2.2e-08 61.6 38 78.9
Ciclev10018568m.g Citrus clementina HOM05D000329 ORTHO05D005330 2.2e-08 61.6 39 74.4
Duzib106G0267 Durio zibethinus HOM05D000329 ORTHO05D005330 2.8e-08 61.2 39 76.9
Glyma.03G251100 Glycine max HOM05D000329 ORTHO05D005330 2.8e-08 61.2 39 74.4
Lj2C42G9 Lonicera japonica HOM05D000329 ORTHO05D005330 2.8e-08 61.2 39 74.4
MSTRG.316 Avicennia marina HOM05D000329 ORTHO05D005330 3.7e-08 60.8 40 72.5
Lsat_1_v5_gn_2_16061 Lactuca sativa HOM05D000329 ORTHO05D005330 3.7e-08 60.8 39 74.4
Manes.09G147900 Manihot esculenta HOM05D000329 ORTHO05D005330 3.7e-08 60.8 39 74.4
Sopen12g010860 Solanum pennellii HOM05D000329 ORTHO05D005330 3.7e-08 60.8 40 72.5
GSVIVG01023507001 Vitis vinifera HOM05D000329 ORTHO05D005330 3.7e-08 60.8 38 78.9
AUR62040926 Chenopodium quinoa HOM05D000329 ORTHO05D005330 4.8e-08 60.5 38 76.3
COL.COLO4_15478 Corchorus olitorius HOM05D000329 ORTHO05D005330 4.8e-08 60.5 38 76.3
Phvul.006G105600 Phaseolus vulgaris HOM05D000329 ORTHO05D005330 4.8e-08 60.5 39 71.8
QL03p030482 Quercus lobata HOM05D000329 ORTHO05D005330 4.8e-08 60.5 39 74.4
arahy.Tifrunner.gnm1.ann1.LXR25M Arachis hypogaea HOM05D000329 ORTHO05D005330 6.3e-08 60.1 39 74.4
EL10Ac4g09016 Beta vulgaris HOM05D000329 ORTHO05D005330 6.3e-08 60.1 38 76.3
AUR62004837 Chenopodium quinoa HOM05D000329 ORTHO05D005330 6.3e-08 60.1 38 73.7
Cc02_g08850 Coffea canephora HOM05D000329 ORTHO05D005330 6.3e-08 60.1 39 74.4
Glyma.19G248400 Glycine max HOM05D000329 ORTHO05D005330 8.2e-08 59.7 39 71.8
MELO3C010156.2 Cucumis melo HOM05D000329 ORTHO05D005330 1.1e-07 59.3 39 71.8
CsaV3_1G045290 Cucumis sativus L. HOM05D000329 ORTHO05D005330 1.1e-07 59.3 39 71.8
RcHm_v2.0_Chr3g0449631 Rosa chinensis HOM05D000329 ORTHO05D005330 1.1e-07 59.3 39 71.8
MD04G1230100 Malus domestica HOM05D000329 ORTHO05D005330 1.4e-07 58.9 39 71.8
Prupe.7G018700 Prunus persica HOM05D000329 ORTHO05D005330 1.4e-07 58.9 39 71.8
CANSAT54G2567 Cannabis sativa HOM05D000329 ORTHO05D005330 1.8e-07 58.5 39 71.8
Nitab4.5_0000432g0080 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.8e-07 58.5 40 70.0
Nitab4.5_0003285g0080 Nicotiana tabacum HOM05D000329 ORTHO05D005330 1.8e-07 58.5 40 70.0
FAN14G2464 Fragaria x ananassa HOM05D000329 ORTHO05D005330 2.4e-07 58.2 39 69.2
Medtr7g115710 Medicago truncatula HOM05D000329 ORTHO05D005330 3.1e-07 57.8 39 71.8
TWI56G0006 Tripterygium wilfordii HOM05D000329 ORTHO05D005330 3.1e-07 57.8 38 76.3
Ca_09463_v3 Cicer arietinum L. HOM05D000329 ORTHO05D005330 4.1e-07 57.4 39 71.8
FvH4_6g01900 Fragaria vesca HOM05D000329 ORTHO05D005330 4.1e-07 57.4 39 69.2
FAN05G0322 Fragaria x ananassa HOM05D000329 ORTHO05D005330 4.1e-07 57.4 39 69.2
FAN05G4177 Fragaria x ananassa HOM05D000329 ORTHO05D005330 4.1e-07 57.4 39 69.2
FAN09G2051 Fragaria x ananassa HOM05D000329 ORTHO05D005330 4.1e-07 57.4 39 69.2
FAN14G5238 Fragaria x ananassa HOM05D000329 ORTHO05D005330 4.1e-07 57.4 39 69.2
Lj1g0020261 Lotus japonicus HOM05D000329 ORTHO05D005330 4.1e-07 57.4 39 71.8
SGA_v2.0_scaffold50G18503 Striga asiatica HOM05D000329 ORTHO05D005330 4.1e-07 57.4 40 67.5
DCAR_000979 Daucus carota HOM05D000329 ORTHO05D005330 5.3e-07 57.0 39 69.2
Sc09g0004230 Simmondsia chinensis HOM05D000329 ORTHO05D005330 5.3e-07 57.0 40 67.5
vmacro19990 Vaccinium macrocarpon HOM05D000329 ORTHO05D005330 6.9e-07 56.6 38 73.7
Ah.06g191840 Amaranthus hybridus HOM05D000329 ORTHO05D005330 9.0e-07 56.2 56 55.4
PSO063G2047 Papaver somniferum HOM05D000329 ORTHO05D005330 9.0e-07 56.2 38 68.4
PGR004G1157 Punica granatum HOM05D000329 ORTHO05D005330 9.0e-07 56.2 39 66.7
TPR.G6911 Trifolium pratense HOM05D000329 ORTHO05D005330 9.0e-07 56.2 39 69.2
unitig_46.g18343 Utricularia gibba HOM05D000329 ORTHO05D005330 1.2e-06 55.8 40 62.5
PSO017G0764 Papaver somniferum HOM05D000329 ORTHO05D005330 2.6e-06 54.7 38 65.8
Psat3g006480 Pisum sativum HOM05D000329 ORTHO05D005330 2.6e-06 54.7 39 69.2
Migut.F01542 Erythranthe guttata HOM05D000329 ORTHO05D005330 3.4e-06 54.3 40 60.0
ATR0736G139 Amborella trichopoda HOM05D000329 ORTHO05D005330 1.0e-05 52.8 40 60.0
TAR636G0200 Trochodendron aralioides HOM05D000329 ORTHO05D005330 1.0e-05 52.8 38 68.4


User provided reference genes

Program Settings