Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 1.1e-95 353.2 174 100.0
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 2.5e-95 352.1 174 99.4
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 6.2e-94 347.4 174 98.3
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 1.4e-93 346.3 174 98.3
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 3.4e-92 341.7 174 96.6
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 8.4e-91 337.0 175 96.0
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 5.4e-90 334.3 167 97.6
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 5.4e-90 334.3 167 97.6
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 5.4e-90 334.3 167 97.6
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 1.2e-89 333.2 167 97.0
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 1.2e-89 333.2 167 97.0
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 8.7e-88 327.0 167 94.0
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 3.3e-87 325.1 162 98.8
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 7.4e-87 323.9 162 98.1
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 2.2e-83 312.4 176 88.6
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 6.4e-83 310.8 174 86.8
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 4.6e-81 304.7 174 83.9
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 1.3e-80 303.1 176 83.0
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 2.3e-80 302.4 176 82.4
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 3.0e-80 302.0 174 84.5
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 3.9e-80 301.6 176 82.4
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 6.7e-80 300.8 174 82.8
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 8.7e-80 300.4 176 83.5
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 1.5e-79 299.7 176 80.7
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 1.5e-79 299.7 175 81.7
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 4.3e-79 298.1 176 81.8
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 5.6e-79 297.7 177 82.5
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 7.4e-79 297.4 177 81.9
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 9.6e-79 297.0 179 81.0
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 9.6e-79 297.0 174 81.0
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 2.1e-78 295.8 176 80.7
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 2.1e-78 295.8 177 82.5
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 4.8e-78 294.7 177 81.9
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 8.2e-78 293.9 166 86.1
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 8.2e-78 293.9 177 81.9
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 8.2e-78 293.9 177 80.2
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 1.1e-77 293.5 176 80.1
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 1.1e-77 293.5 176 80.1
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 1.1e-77 293.5 176 80.1
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.4e-77 293.1 174 81.6
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 2.4e-77 292.4 176 79.5
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 2.4e-77 292.4 174 79.9
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 3.1e-77 292.0 175 81.1
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 3.1e-77 292.0 174 82.2
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 5.3e-77 291.2 176 80.7
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 6.9e-77 290.8 176 80.1
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 6.9e-77 290.8 177 80.8
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 9.0e-77 290.4 177 80.8
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 9.0e-77 290.4 175 80.6
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 9.0e-77 290.4 175 80.6
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.2e-76 290.0 176 79.5
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 1.5e-76 289.7 175 80.6
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 1.5e-76 289.7 176 79.5
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 1.5e-76 289.7 176 79.0
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 2.0e-76 289.3 177 79.7
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 3.4e-76 288.5 177 79.1
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 4.5e-76 288.1 175 80.0
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 7.6e-76 287.3 179 78.2
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 1.0e-75 287.0 176 79.0
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 1.3e-75 286.6 179 77.7
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 1.3e-75 286.6 174 78.7
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 3.8e-75 285.0 177 78.5
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 3.8e-75 285.0 166 83.1
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 4.9e-75 284.6 166 83.1
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 6.5e-75 284.3 181 77.3
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 4.2e-74 281.6 178 77.0
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 4.2e-74 281.6 165 83.6
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 7.1e-74 280.8 176 76.1
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 1.2e-73 280.0 175 77.7
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 4.6e-73 278.1 166 82.5
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 4.6e-73 278.1 175 78.3
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 6.0e-73 277.7 177 78.0
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 6.0e-73 277.7 175 80.0
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 7.9e-73 277.3 176 76.7
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 1.0e-72 276.9 172 79.1
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 1.3e-72 276.6 166 81.3
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 1.8e-72 276.2 176 74.4
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.8e-72 276.2 173 77.5
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 2.3e-72 275.8 170 78.8
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 3.9e-72 275.0 175 74.3
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.9e-72 275.0 175 74.3
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.9e-72 275.0 175 74.3
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 5.1e-72 274.6 174 77.6
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 8.7e-72 273.9 175 73.7
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 1.5e-71 273.1 166 78.9
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.5e-71 273.1 178 75.8
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 1.9e-71 272.7 170 79.4
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 2.5e-71 272.3 174 75.9
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 2.5e-71 272.3 176 73.3
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 3.3e-71 271.9 172 75.6
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 4.3e-71 271.6 168 77.4
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 7.4e-71 270.8 174 75.9
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 7.4e-71 270.8 173 73.4
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 1.3e-70 270.0 164 78.0
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 1.6e-70 269.6 176 72.7
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 1.6e-70 269.6 177 74.6
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 3.7e-70 268.5 176 73.3
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 3.7e-70 268.5 161 81.4
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 3.7e-70 268.5 174 75.3
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 4.8e-70 268.1 174 72.4
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 6.3e-70 267.7 167 75.4
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 6.3e-70 267.7 168 78.0
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 6.3e-70 267.7 172 74.4
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 8.2e-70 267.3 173 72.3
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 1.4e-69 266.5 166 80.1
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 1.4e-69 266.5 227 62.1
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 1.8e-69 266.2 178 69.7
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 5.3e-69 264.6 154 83.1
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 5.3e-69 264.6 178 71.9
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.3e-69 264.6 171 73.7
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 1.2e-68 263.5 175 72.6
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 1.5e-68 263.1 170 72.4
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 2.0e-68 262.7 168 74.4
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 5.9e-68 261.2 175 71.4
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 5.9e-68 261.2 165 76.4
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.3e-67 260.0 166 74.7
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 3.8e-67 258.5 166 74.1
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 1.1e-66 256.9 168 72.6
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 1.4e-66 256.5 177 70.6
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 2.5e-66 255.8 157 78.3
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 2.5e-66 255.8 176 67.6
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 5.5e-66 254.6 177 70.6
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 7.2e-66 254.2 165 72.1
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 1.2e-65 253.4 163 75.5
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 1.6e-65 253.1 175 68.6
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 3.0e-64 248.8 177 67.2
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 5.1e-64 248.1 170 70.6
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 6.7e-64 247.7 180 66.1
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 1.1e-63 246.9 121 99.2
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 2.5e-63 245.7 156 76.9
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 2.5e-63 245.7 173 65.3
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 3.3e-63 245.4 174 69.5
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 9.7e-63 243.8 157 72.6
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 1.7e-62 243.0 167 71.3
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 1.6e-57 226.5 165 66.1
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 2.1e-57 226.1 165 66.1
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 3.4e-52 208.8 124 82.3
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 1.0e-51 207.2 123 80.5
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 1.0e-51 207.2 123 80.5
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 1.1e-50 203.8 112 83.0
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.1e-50 203.8 121 81.0
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 3.6e-49 198.7 145 70.3
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 1.4e-48 196.8 191 51.3
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 4.8e-46 188.3 96 90.6
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 3.1e-45 185.7 103 84.5
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 9.1e-45 184.1 100 86.0
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 7.7e-44 181.0 114 78.9
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 1.6e-41 173.3 173 49.1
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 1.9e-34 149.8 84 79.8
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 2.8e-30 136.0 95 71.6
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.7e-27 126.7 115 59.1
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 1.0e-24 117.5 60 86.7
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 3.7e-22 109.0 157 38.2
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 4.9e-22 108.6 123 47.2
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 4.9e-22 108.6 110 52.7
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 2.7e-20 102.8 139 38.8
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-19 99.4 97 51.5
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 6.6e-19 98.2 184 34.2
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 2.3e-16 89.7 54 77.8
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 2.2e-14 83.2 52 76.9
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 8.3e-14 81.3 48 79.2
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 1.6e-12 77.0 50 74.0
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 7.3e-10 68.2 63 55.6


User provided reference genes

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