Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 1.1e-127 459.9 232 100.0
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 4.7e-121 438.0 232 96.1
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 3.7e-118 428.3 232 94.0
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 9.4e-114 413.7 232 90.5
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 6.7e-112 407.5 236 88.6
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 4.8e-110 401.4 234 88.5
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 3.6e-105 385.2 229 86.5
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 2.6e-103 379.0 232 84.1
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 2.4e-101 372.5 223 86.1
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 1.2e-100 370.2 223 85.7
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 1.6e-100 369.8 222 86.0
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 5.9e-100 367.9 222 85.6
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 7.2e-98 360.9 233 79.8
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 1.7e-78 296.6 191 75.9
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 3.7e-78 295.4 216 71.3
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 1.1e-77 293.9 212 69.8
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 2.4e-77 292.7 211 68.2
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 7.0e-77 291.2 198 71.2
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 1.2e-76 290.4 216 69.4
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 2.0e-76 289.7 204 72.1
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.7e-76 289.3 190 73.2
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 4.6e-76 288.5 193 73.6
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 4.6e-76 288.5 192 74.0
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 6.0e-76 288.1 192 75.0
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 7.8e-76 287.7 193 75.1
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 1.3e-75 287.0 193 72.5
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 1.3e-75 287.0 215 67.4
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 1.7e-75 286.6 201 72.1
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 1.7e-75 286.6 229 66.4
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 2.3e-75 286.2 233 66.1
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 3.9e-75 285.4 195 72.8
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 3.9e-75 285.4 215 67.0
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 8.6e-75 284.3 192 73.4
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 8.6e-75 284.3 200 71.5
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 1.9e-74 283.1 233 64.8
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 2.5e-74 282.7 192 72.9
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 5.6e-74 281.6 192 71.9
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 9.5e-74 280.8 193 73.1
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 1.2e-73 280.4 206 66.5
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 2.8e-73 279.3 209 68.4
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 2.8e-73 279.3 212 68.4
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 8.1e-73 277.7 223 63.2
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 8.1e-73 277.7 232 62.1
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 1.1e-72 277.3 195 70.3
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 6.8e-72 274.6 228 66.7
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 8.9e-72 274.2 193 67.9
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 8.9e-72 274.2 204 69.6
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 2.6e-71 272.7 187 72.7
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 3.4e-71 272.3 205 65.9
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 3.4e-71 272.3 207 69.1
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 3.4e-71 272.3 188 69.1
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 4.4e-71 271.9 228 64.9
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 4.4e-71 271.9 221 62.0
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 1.3e-70 270.4 196 66.8
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 2.2e-70 269.6 177 73.4
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 2.2e-70 269.6 192 67.7
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 2.9e-70 269.2 199 66.3
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 2.9e-70 269.2 178 74.2
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 3.7e-70 268.9 188 72.3
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 4.9e-70 268.5 192 67.2
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 4.9e-70 268.5 190 70.5
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 6.4e-70 268.1 208 67.3
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 8.3e-70 267.7 193 72.0
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 1.1e-69 267.3 227 63.9
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 1.4e-69 266.9 204 69.1
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 1.4e-69 266.9 199 65.8
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 1.9e-69 266.5 235 61.7
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 2.4e-69 266.2 190 70.0
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 3.2e-69 265.8 195 66.2
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 4.1e-69 265.4 180 71.1
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 5.4e-69 265.0 197 67.0
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 1.2e-68 263.8 197 66.5
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 4.6e-68 261.9 200 65.5
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 4.6e-68 261.9 185 71.9
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 6.0e-68 261.5 178 71.3
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 3.9e-67 258.8 197 64.0
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 3.9e-67 258.8 193 65.3
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 3.9e-67 258.8 191 68.6
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 3.9e-67 258.8 193 65.8
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 2.5e-66 256.1 220 60.5
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 5.6e-66 255.0 193 64.2
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 1.6e-65 253.4 192 65.1
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 8.1e-65 251.1 146 81.5
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 1.4e-64 250.4 205 64.9
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 1.4e-64 250.4 187 67.4
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 6.8e-64 248.1 230 58.3
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 2.2e-62 243.0 302 48.7
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 3.8e-62 242.3 265 50.9
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 1.6e-60 236.9 199 60.8
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 3.5e-60 235.7 206 57.3
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 4.6e-60 235.3 194 60.3
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 4.6e-60 235.3 202 60.4
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 1.5e-58 230.3 189 59.8
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 1.2e-57 227.3 194 60.8
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 5.8e-55 218.4 140 72.1
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 7.6e-55 218.0 169 65.1
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 1.7e-54 216.9 189 57.1
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 3.0e-51 206.1 189 53.4
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 6.6e-51 204.9 185 53.5
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 2.5e-50 203.0 189 52.4
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.4e-48 196.4 149 64.4
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 1.7e-46 190.3 150 62.7
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 4.2e-45 185.7 154 58.4
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 3.0e-43 179.5 152 58.6
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 2.9e-38 162.9 98 76.5
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 3.2e-37 159.5 80 95.0
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.0e-35 154.5 98 69.4
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 9.6e-34 147.9 164 51.2
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 1.3e-33 147.5 164 51.2
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 6.9e-32 141.7 146 47.3
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 1.2e-31 141.0 164 48.8
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 2.9e-30 136.3 146 53.4
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 1.8e-27 127.1 79 70.9
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.1e-26 124.4 79 69.6
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.9e-26 123.6 78 69.2
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 5.9e-23 112.1 233 34.3
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 3.2e-21 106.3 107 58.9
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 9.4e-21 104.8 61 78.7
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 2.7e-20 103.2 61 77.0
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 4.8e-17 92.4 77 58.4
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 7.7e-15 85.1 56 69.6
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 1.4e-11 74.3 39 89.7
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 2.2e-09 67.0 40 72.5
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 1.8e-08 63.9 40 67.5
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.8e-08 63.9 39 71.8
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 2.4e-08 63.5 35 85.7
BcaC05g29972 Brassica carinata HOM05D000160 ORTHO05D000914 7.7e-07 58.5 28 96.4
SGA_v2.0_scaffold243G44307 Striga asiatica HOM05D060893 ORTHO05D008752 2.9e-06 56.6 84 45.2


User provided reference genes

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