Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G04560 Arabidopsis thaliana HOM05D006391 ORTHO05D007767 9.0e-216 753.4 418 100.0
AL3G14580 Arabidopsis lyrata HOM05D006391 ORTHO05D007767 1.2e-199 699.9 418 93.3
Thhalv10020805m.g Eutrema salsugineum HOM05D006391 ORTHO05D007767 3.6e-188 661.8 423 88.2
Carub.0003s0371 Capsella rubella HOM05D006391 ORTHO05D007767 4.1e-184 648.3 422 87.4
CARHR078730 Cardamine hirsuta HOM05D006391 ORTHO05D007767 9.1e-176 620.5 431 82.6
BolC5t34924H Brassica oleracea HOM05D006391 ORTHO05D007767 1.3e-174 616.7 419 85.2
BcaC05g30188 Brassica carinata HOM05D006391 ORTHO05D007767 3.6e-172 608.6 419 83.3
Sp3g03400 Schrenkiella parvula HOM05D006391 ORTHO05D007767 8.3e-169 597.4 429 80.9
BraA05t23038Z Brassica rapa HOM05D006391 ORTHO05D007767 1.8e-168 596.3 421 82.4
Aa31LG5G14980 Aethionema arabicum HOM05D006391 ORTHO05D007767 5.9e-167 591.3 429 80.9
C05p62710 Brassica napus HOM05D006391 ORTHO05D007767 1.4e-160 570.1 418 80.6
BcaC05g29933 Brassica carinata HOM05D006391 ORTHO05D007767 5.4e-160 568.2 418 80.4
A05p42930 Brassica napus HOM05D006391 ORTHO05D007767 6.8e-155 551.2 418 78.9
THA.LOC104827288 Tarenaya hassleriana HOM05D006391 ORTHO05D007767 2.1e-135 486.5 427 69.1
CANSAT54G0018 Cannabis sativa HOM05D006391 ORTHO05D007767 8.4e-129 464.5 425 62.6
COL.COLO4_15424 Corchorus olitorius HOM05D006391 ORTHO05D007767 8.4e-129 464.5 432 62.0
Cfa006327 Carpinus fangiana HOM05D006391 ORTHO05D007767 5.4e-128 461.8 433 62.1
CiPaw.07G078100 Carya illinoinensis HOM05D006391 ORTHO05D007767 5.4e-128 461.8 430 63.0
Gohir.A11G251400 Gossypium hirsutum HOM05D006391 ORTHO05D007767 5.6e-125 451.8 436 59.9
Manes.08G137500 Manihot esculenta HOM05D006391 ORTHO05D007767 3.6e-124 449.1 430 60.5
Ciclev10020524m.g Citrus clementina HOM05D006391 ORTHO05D007767 2.4e-123 446.4 421 61.0
Thecc.05G276300 Theobroma cacao HOM05D006391 ORTHO05D007767 4.0e-123 445.7 432 60.0
Gorai.007G280500 Gossypium raimondii HOM05D006391 ORTHO05D007767 6.9e-123 444.9 437 59.0
Nn1g02693 Nelumbo nucifera HOM05D006391 ORTHO05D007767 9.0e-123 444.5 423 60.0
Duzib177G0389 Durio zibethinus HOM05D006391 ORTHO05D007767 2.6e-122 443.0 419 61.3
Atru.chr2.892 Acer truncatum HOM05D006391 ORTHO05D007767 4.5e-122 442.2 429 60.1
Gohir.D11G261800 Gossypium hirsutum HOM05D006391 ORTHO05D007767 5.8e-122 441.8 437 59.0
Glyma.20G222100 Glycine max HOM05D006391 ORTHO05D007767 7.6e-122 441.4 430 60.9
Potri.013G044600 Populus trichocarpa HOM05D006391 ORTHO05D007767 7.6e-122 441.4 426 61.3
Cc02_g09040 Coffea canephora HOM05D006391 ORTHO05D007767 1.3e-121 440.7 428 60.0
Peaxi162Scf00120g00213 Petunia axillaris HOM05D006391 ORTHO05D007767 1.7e-121 440.3 428 60.3
GSVIVG01036208001 Vitis vinifera HOM05D006391 ORTHO05D007767 2.9e-121 439.5 388 61.9
Sabra13G0041000 Salix brachista HOM05D006391 ORTHO05D007767 3.8e-121 439.1 425 61.6
Prupe.6G348300 Prunus persica HOM05D006391 ORTHO05D007767 4.9e-121 438.7 447 57.0
Ca_10006_v3 Cicer arietinum L. HOM05D006391 ORTHO05D007767 8.4e-121 438.0 431 61.0
PGR004G0019 Punica granatum HOM05D006391 ORTHO05D007767 8.4e-121 438.0 444 56.8
TWI56G1126 Tripterygium wilfordii HOM05D006391 ORTHO05D007767 8.4e-121 438.0 424 59.7
MD12G1245500 Malus domestica HOM05D006391 ORTHO05D007767 4.2e-120 435.6 445 58.0
MBI17_g17506_MAGBIO Magnolia biondii HOM05D006391 ORTHO05D007767 6.0e-119 431.8 421 58.7
Sopen11g002020 Solanum pennellii HOM05D006391 ORTHO05D007767 1.3e-118 430.6 435 58.6
Eucgr.H04256 Eucalyptus grandis HOM05D006391 ORTHO05D007767 1.8e-118 430.3 439 58.8
Dinv14621 Davidia involucrata HOM05D006391 ORTHO05D007767 5.1e-118 428.7 425 60.2
CsaV3_1G045530 Cucumis sativus L. HOM05D006391 ORTHO05D007767 1.1e-117 427.6 435 59.1
Lj2A39G66 Lonicera japonica HOM05D006391 ORTHO05D007767 1.1e-117 427.6 385 62.9
Lj5g0002062 Lotus japonicus HOM05D006391 ORTHO05D007767 1.1e-117 427.6 423 59.3
Lalb_Chr21g0311261 Lupinus albus HOM05D006391 ORTHO05D007767 1.1e-117 427.6 426 59.4
QL03p031977 Quercus lobata HOM05D006391 ORTHO05D007767 1.1e-117 427.6 433 59.8
VMungo0720G1212 Vigna mungo HOM05D006391 ORTHO05D007767 1.1e-117 427.6 429 62.2
AUR62004876 Chenopodium quinoa HOM05D006391 ORTHO05D007767 2.5e-117 426.4 435 57.2
Solyc11g006080.2 Solanum lycopersicum HOM05D006391 ORTHO05D007767 2.5e-117 426.4 428 58.6
PGSC0003DMG400028690 Solanum tuberosum HOM05D006391 ORTHO05D007767 4.3e-117 425.6 426 59.2
Nitab4.5_0000856g0160 Nicotiana tabacum HOM05D006391 ORTHO05D007767 7.4e-117 424.9 435 58.6
TAR636G3322 Trochodendron aralioides HOM05D001448 ORTHO05D005781 7.4e-117 424.9 424 58.0
Phvul.L001863 Phaseolus vulgaris HOM05D006391 ORTHO05D007767 2.1e-116 423.3 430 61.6
PSO832G3851 Papaver somniferum HOM05D006391 ORTHO05D007767 2.8e-116 422.9 426 58.2
Medtr1g079830 Medicago truncatula HOM05D006391 ORTHO05D007767 6.2e-116 421.8 426 58.7
Nitab4.5_0004928g0020 Nicotiana tabacum HOM05D006391 ORTHO05D007767 6.2e-116 421.8 437 57.7
FAN02G0817 Fragaria x ananassa HOM05D006391 ORTHO05D007767 2.4e-115 419.9 433 61.0
AUR62037609 Chenopodium quinoa HOM05D006391 ORTHO05D007767 3.1e-115 419.5 435 56.8
Glyma.10G167000 Glycine max HOM05D006391 ORTHO05D007767 3.1e-115 419.5 388 63.4
Sc09g0004120 Simmondsia chinensis HOM05D006391 ORTHO05D007767 3.1e-115 419.5 438 55.5
TPR.G10279 Trifolium pratense HOM05D006391 ORTHO05D007767 4.0e-115 419.1 423 59.8
FAN05G3173 Fragaria x ananassa HOM05D006391 ORTHO05D007767 9.0e-115 417.9 434 60.6
FAN09G3726 Fragaria x ananassa HOM05D006391 ORTHO05D007767 1.2e-114 417.5 433 60.3
FAN05G1344 Fragaria x ananassa HOM05D006391 ORTHO05D007767 3.4e-114 416.0 434 60.1
RcHm_v2.0_Chr3g0450061 Rosa chinensis HOM05D006391 ORTHO05D007767 5.8e-114 415.2 432 60.6
Actinidia06783 Actinidia chinensis HOM05D006391 ORTHO05D007767 1.7e-113 413.7 425 57.2
Haze_04461 Corylus avellana HOM05D006391 ORTHO05D007767 1.7e-113 413.7 546 49.5
PSO210G7203 Papaver somniferum HOM05D006391 ORTHO05D007767 2.9e-113 412.9 424 57.5
SalBow3G3308 Salvia bowleyana HOM05D006391 ORTHO05D007767 2.9e-113 412.9 428 56.3
CAN.G582.18 Capsicum annuum HOM05D006391 ORTHO05D007767 6.4e-113 411.8 406 61.1
EL10Ac4g09055 Beta vulgaris HOM05D006391 ORTHO05D007767 5.5e-112 408.7 424 57.3
Aqoxy5G00275 Aquilegia oxysepala HOM05D006391 ORTHO05D007767 6.0e-111 405.2 425 56.2
AUR62001083 Chenopodium quinoa HOM05D006391 ORTHO05D007767 6.0e-111 405.2 459 53.8
vmacro20003 Vaccinium macrocarpon HOM05D006391 ORTHO05D007767 1.0e-110 404.4 431 56.1
DCAR_028379 Daucus carota HOM05D006391 ORTHO05D007767 1.8e-110 403.7 338 64.8
arahy.Tifrunner.gnm1.ann1.DTTE32 Arachis hypogaea HOM05D006391 ORTHO05D007767 3.9e-110 402.5 441 55.3
arahy.Tifrunner.gnm1.ann1.9EWV20 Arachis hypogaea HOM05D006391 ORTHO05D007767 6.7e-110 401.7 434 56.0
FAN14G3605 Fragaria x ananassa HOM05D006391 ORTHO05D007767 2.5e-109 399.8 440 57.7
HanXRQChr08g0225371 Helianthus annuus HOM05D006391 ORTHO05D007767 5.6e-109 398.7 433 55.9
ClCG06G009350 Citrullus lanatus HOM05D006391 ORTHO05D007767 9.6e-109 397.9 343 64.7
ATR0680G180 Amborella trichopoda HOM05D006391 ORTHO05D007767 1.3e-108 397.5 421 54.9
FAN14G5548 Fragaria x ananassa HOM05D006391 ORTHO05D007767 1.3e-108 397.5 440 57.3
FvH4_6g02310 Fragaria vesca HOM05D006391 ORTHO05D007767 1.6e-108 397.1 440 57.3
Hund22148 Selenicereus undatus HOM05D006391 ORTHO05D007767 3.7e-108 396.0 370 60.8
ECA233G2464 Erigeron canadensis HOM05D006391 ORTHO05D007767 6.2e-108 395.2 438 54.8
MELO3C024661.2 Cucumis melo HOM05D006391 ORTHO05D007767 8.2e-108 394.8 446 57.2
Lsat_1_v5_gn_8_2721 Lactuca sativa HOM05D006391 ORTHO05D007767 2.0e-106 390.2 430 54.2
unitig_32.g11831 Utricularia gibba HOM05D006391 ORTHO05D007767 4.5e-106 389.0 423 57.2
Migut.F00812 Erythranthe guttata HOM05D006391 ORTHO05D007767 1.0e-105 387.9 422 55.5
Sed0026137 Sechium edule HOM05D006391 ORTHO05D007767 1.3e-105 387.5 426 55.2
CSS0020771 Camellia sinensis var. sinensis HOM05D006391 ORTHO05D007767 7.9e-103 378.3 421 55.1
Sed0023982 Sechium edule HOM05D006391 ORTHO05D007767 3.0e-102 376.3 425 55.5
Sed0020342 Sechium edule HOM05D006391 ORTHO05D007767 1.1e-101 374.4 431 52.4
Rhsim05G0175400 Rhododendron simsii HOM05D006391 ORTHO05D007767 1.9e-101 373.6 445 51.7
Ah.04g163310 Amaranthus hybridus HOM05D006391 ORTHO05D007767 3.4e-98 362.8 428 54.0
Os02g0820600 Oryza sativa ssp. japonica HOM05D006391 ORTHO05D007767 3.9e-94 349.4 345 56.2
Cpa.g.sc162.14 Carica papaya HOM05D006391 ORTHO05D007767 1.2e-90 337.8 339 61.1
SGA_v2.0_scaffold243G44310 Striga asiatica HOM05D006391 ORTHO05D007767 1.0e-89 334.7 351 54.7
SEGI_17356 Sequoiadendron giganteum HOM05D006391 ORTHO05D007767 1.4e-88 330.9 337 53.4
Zm00001eb259140 Zea mays HOM05D006391 ORTHO05D007767 1.0e-86 324.7 327 58.1
MD04G1228400 Malus domestica HOM05D006391 ORTHO05D007767 5.0e-81 305.8 268 63.4
CDE04G1237 Ceratophyllum demersum HOM05D006391 ORTHO05D007767 1.6e-79 300.8 314 55.7
Psat6g143040 Pisum sativum HOM05D006391 ORTHO05D007767 1.8e-75 287.3 338 53.3
Pp3c19_8680 Physcomitrium patens HOM05D006391 ORTHO05D007767 1.6e-74 284.3 423 42.8
HPP92_007146 Vanilla planifolia HOM05D006391 ORTHO05D007767 1.7e-73 280.8 268 57.1
Mapoly0044s0074 Marchantia polymorpha HOM05D006391 ORTHO05D007767 1.4e-70 271.2 430 41.2
SMO203G0061 Selaginella moellendorffii HOM05D006391 ORTHO05D007767 5.7e-69 265.8 331 47.1
HPP92_007142 Vanilla planifolia HOM05D006391 ORTHO05D007767 3.0e-62 243.4 320 47.8
Oeu034581.1 Olea europaea HOM05D006391 ORTHO05D007767 4.0e-54 216.5 213 56.8
CBR_g8309 Chara braunii HOM05D006391 ORTHO05D007767 3.5e-50 203.4 350 37.7
SHI23187 Sapria himalayana HOM05D006391 ORTHO05D007767 1.3e-44 184.9 211 53.6
QL03p032009 Quercus lobata HOM05D006391 ORTHO05D007767 1.7e-44 184.5 125 76.0
Oeu058337.1 Olea europaea HOM05D006391 ORTHO05D007767 1.9e-40 171.0 132 66.7
HPP92_007141 Vanilla planifolia HOM05D006391 ORTHO05D007767 2.1e-31 141.0 88 76.1
BolC3t13192H Brassica oleracea HOM05D006391 ORTHO05D007767 2.1e-26 124.4 190 44.7
BcaB04g19320 Brassica carinata HOM05D006391 ORTHO05D007767 3.3e-24 117.1 108 65.7
Cre02.g105450 Chlamydomonas reinhardtii HOM05D006391 ORTHO05D007767 7.3e-24 115.9 431 25.8
MCO07G609 Micromonas commoda HOM05D006391 ORTHO05D007767 3.4e-21 107.1 338 28.7
C03p06830 Brassica napus HOM05D006391 ORTHO05D007767 2.9e-20 104.0 180 41.7
BcaC02g11594 Brassica carinata HOM05D006391 ORTHO05D007767 2.5e-16 90.9 52 80.8
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 5.6e-16 89.7 46 93.5
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 9.6e-16 89.0 46 91.3
MD04G1228300 Malus domestica HOM05D006391 ORTHO05D007767 1.2e-15 88.6 166 44.6
PRCOL_00004538 Prasinoderma coloniale HOM05D006391 ORTHO05D007767 6.0e-10 69.7 325 25.8
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 1.8e-06 58.2 32 84.4
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 4.0e-06 57.0 32 81.2


User provided reference genes

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