Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 1.5e-248 862.4 450 100.0
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 8.8e-225 783.5 450 87.1
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 2.2e-220 768.8 450 87.6
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 1.9e-219 765.8 450 90.2
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 2.2e-207 725.7 447 84.6
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 2.0e-205 719.2 447 82.8
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 9.1e-198 693.7 447 78.5
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 3.8e-196 688.3 448 77.9
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 1.0e-193 680.2 452 78.1
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 3.4e-192 675.2 452 78.8
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 3.4e-192 675.2 452 78.8
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 4.3e-187 658.3 447 76.5
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 2.3e-180 636.0 447 72.0
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 1.2e-170 603.6 448 69.0
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 7.5e-168 594.3 448 67.6
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 8.6e-164 580.9 447 67.3
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 1.1e-163 580.5 448 66.7
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 2.5e-163 579.3 446 66.8
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 3.3e-163 578.9 448 66.7
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 9.5e-163 577.4 448 66.5
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 9.5e-163 577.4 448 66.3
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 2.1e-162 576.2 448 66.3
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 2.1e-162 576.2 448 66.3
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 2.1e-157 559.7 451 64.7
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 3.9e-156 555.4 446 65.2
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 8.1e-154 547.7 452 64.2
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 2.3e-148 529.6 405 65.4
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 2.0e-136 490.0 456 58.6
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 7.1e-134 481.5 408 61.5
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 2.1e-133 479.9 444 58.6
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 1.8e-132 476.9 459 58.2
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 5.1e-132 475.3 445 56.6
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 8.7e-132 474.6 444 57.2
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 1.1e-131 474.2 429 56.4
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 2.5e-131 473.0 445 56.6
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 3.3e-131 472.6 462 56.5
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 2.8e-130 469.5 444 56.5
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 5.3e-129 465.3 436 57.3
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 1.2e-128 464.2 409 59.2
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 1.2e-128 464.2 448 57.1
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 1.5e-128 463.8 449 55.7
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 1.3e-127 460.7 427 58.8
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 1.7e-127 460.3 443 56.2
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 1.7e-127 460.3 458 56.3
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 2.9e-127 459.5 455 54.9
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 3.8e-127 459.1 450 54.7
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 4.9e-127 458.8 448 56.7
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 8.4e-127 458.0 467 54.8
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 4.2e-126 455.7 450 55.8
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 5.5e-126 455.3 409 57.7
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.2e-125 454.1 448 54.9
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 2.1e-125 453.4 416 58.2
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 7.9e-125 451.4 450 53.8
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 1.3e-124 450.7 463 53.8
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 8.7e-124 448.0 397 58.7
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 5.7e-123 445.3 397 58.9
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 1.6e-122 443.7 458 54.4
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 2.2e-122 443.4 393 57.8
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 2.8e-122 443.0 454 53.5
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 4.8e-122 442.2 453 53.6
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 3.1e-121 439.5 419 56.1
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 4.1e-121 439.1 451 53.4
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 5.3e-121 438.7 446 53.1
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 6.9e-121 438.3 459 52.7
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 1.7e-119 433.7 398 56.8
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 5.0e-119 432.2 447 53.9
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 1.2e-117 427.6 458 50.9
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 2.5e-115 419.9 441 53.5
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 5.7e-115 418.7 390 56.7
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 1.1e-113 414.5 399 56.4
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 4.1e-113 412.5 428 51.9
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 1.3e-111 407.5 395 53.9
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 1.1e-110 404.4 419 51.6
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 1.4e-110 404.1 419 51.3
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 2.7e-109 399.8 445 49.7
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 6.1e-109 398.7 394 52.8
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 1.4e-108 397.5 464 50.0
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 5.1e-108 395.6 426 51.2
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 6.7e-108 395.2 457 50.3
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 8.8e-108 394.8 395 52.2
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 2.6e-107 393.3 449 49.9
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 5.7e-107 392.1 443 49.0
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 7.4e-107 391.7 456 49.8
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 8.2e-106 388.3 460 48.0
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 1.4e-105 387.5 410 51.2
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.8e-105 387.1 455 49.9
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 5.3e-105 385.6 455 49.7
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 1.1e-102 377.9 397 52.9
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 5.5e-102 375.6 431 48.7
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 1.2e-101 374.4 389 51.7
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 2.1e-101 373.6 347 57.3
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 3.6e-101 372.9 389 51.4
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 3.6e-101 372.9 400 50.0
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 6.1e-101 372.1 384 54.2
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 8.0e-101 371.7 333 58.0
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 8.8e-100 368.2 396 51.0
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 1.3e-98 364.4 451 46.6
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 3.8e-95 352.8 441 45.4
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 1.4e-92 344.4 352 53.1
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 4.1e-89 332.8 437 45.5
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 3.5e-88 329.7 353 51.8
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 8.5e-87 325.1 324 55.9
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 9.4e-86 321.6 370 48.6
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 2.7e-85 320.1 419 47.5
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 7.2e-78 295.4 403 44.2
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 1.0e-76 291.6 452 39.8
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 3.0e-76 290.0 359 45.7
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 4.0e-76 289.7 342 50.0
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 7.8e-72 275.4 353 47.6
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 4.4e-67 259.6 258 55.8
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 9.8e-67 258.5 373 41.3
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 2.8e-61 240.4 166 65.7
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 1.1e-60 238.4 395 38.2
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 8.9e-60 235.3 233 55.4
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 4.4e-59 233.0 443 40.4
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 1.1e-57 228.4 312 46.5
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 3.2e-57 226.9 212 53.8
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 1.8e-52 211.1 390 34.6
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 8.3e-50 202.2 394 33.5
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 6.0e-48 196.1 409 35.0
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 2.0e-43 181.0 396 34.6
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 3.9e-23 113.6 447 26.4
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 2.8e-21 107.5 207 33.3
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 7.1e-17 92.8 163 33.7
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 9.3e-17 92.4 74 59.5
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 5.1e-15 86.7 211 29.4
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 2.1e-13 81.3 118 44.9
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 5.8e-11 73.2 156 31.4
TAR362G0073 Trochodendron aralioides HOM05D001652 ORTHO05D001768 1.0e-07 62.4 67 50.7


User provided reference genes

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