Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 4.2e-150 534.6 267 100.0
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 4.5e-136 488.0 267 92.5
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 1.1e-110 403.7 275 81.1
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 3.1e-108 395.6 270 75.2
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 3.0e-103 379.0 269 75.5
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 1.1e-102 377.1 268 76.1
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 8.3e-98 360.9 268 71.6
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 7.8e-96 354.4 267 71.5
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 1.9e-94 349.7 268 71.3
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 2.6e-91 339.3 267 69.7
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 2.6e-91 339.3 267 69.7
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 9.9e-91 337.4 263 70.0
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 1.1e-89 334.0 268 67.9
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 1.5e-78 297.0 292 59.6
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 2.5e-78 296.2 296 61.5
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 2.4e-76 289.7 291 58.4
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 6.9e-76 288.1 291 57.7
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 1.7e-74 283.5 283 57.2
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 2.3e-71 273.1 280 56.4
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 2.1e-69 266.5 296 55.1
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 4.8e-69 265.4 286 57.0
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 6.9e-68 261.5 289 54.0
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 1.5e-67 260.4 296 56.1
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 3.4e-67 259.2 291 54.0
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 4.9e-66 255.4 288 53.1
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 1.1e-65 254.2 238 60.1
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 1.9e-65 253.4 292 52.4
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 2.4e-65 253.1 292 52.4
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 3.2e-65 252.7 287 52.6
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 4.2e-65 252.3 289 52.9
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 7.1e-65 251.5 289 52.9
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 7.1e-65 251.5 289 52.9
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 7.1e-65 251.5 289 52.9
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 2.7e-64 249.6 294 53.7
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 1.8e-63 246.9 274 57.7
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 1.8e-63 246.9 292 51.0
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 2.3e-63 246.5 290 53.1
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 2.9e-58 229.6 281 50.2
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 3.8e-58 229.2 308 51.0
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 6.1e-48 195.3 277 48.7
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 1.0e-39 167.9 295 43.7
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 2.3e-39 166.8 289 44.6
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 2.0e-38 163.7 259 44.4
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 1.0e-34 151.4 304 42.4
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 1.7e-34 150.6 307 39.4
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 5.0e-34 149.1 315 38.4
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 5.0e-34 149.1 315 38.4
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 2.5e-33 146.7 300 39.7
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 2.7e-32 143.3 301 38.5
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 6.1e-32 142.1 296 35.8
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 1.4e-31 141.0 314 36.6
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.8e-31 140.6 277 41.2
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 3.9e-31 139.4 288 39.9
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 6.7e-31 138.7 313 37.7
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 1.5e-30 137.5 288 39.6
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 2.0e-30 137.1 297 37.0
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 2.0e-30 137.1 307 35.8
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 2.6e-30 136.7 310 37.4
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 5.7e-30 135.6 325 37.2
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 5.7e-30 135.6 309 37.9
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 7.4e-30 135.2 304 38.2
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 1.3e-29 134.4 311 37.6
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 8.2e-29 131.7 312 34.6
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 8.2e-29 131.7 294 37.8
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 2.4e-28 130.2 284 39.1
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 3.1e-28 129.8 289 35.3
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 4.1e-28 129.4 293 39.2
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 4.1e-28 129.4 300 36.7
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 9.1e-28 128.3 297 38.7
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 9.1e-28 128.3 315 36.8
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 9.1e-28 128.3 305 38.0
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 1.6e-27 127.5 285 33.7
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 2.0e-27 127.1 296 37.2
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 2.6e-27 126.7 298 33.9
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 2.6e-27 126.7 298 37.6
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 3.5e-27 126.3 300 38.0
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 4.5e-27 125.9 313 35.8
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 4.5e-27 125.9 278 36.0
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 4.5e-27 125.9 305 34.8
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 5.9e-27 125.6 296 38.5
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 7.7e-27 125.2 280 37.5
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 1.0e-26 124.8 306 35.9
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 1.0e-26 124.8 303 38.0
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 1.3e-26 124.4 300 39.3
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 1.7e-26 124.0 288 33.3
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 2.9e-26 123.2 288 35.1
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 2.9e-26 123.2 297 32.7
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 2.9e-26 123.2 284 37.3
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 5.0e-26 122.5 285 37.5
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 6.5e-26 122.1 253 39.5
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 8.5e-26 121.7 269 39.0
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 8.5e-26 121.7 238 38.2
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 1.5e-25 120.9 276 37.0
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 2.5e-25 120.2 292 37.7
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 4.2e-25 119.4 308 34.4
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 4.2e-25 119.4 308 34.4
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 9.4e-25 118.2 306 33.7
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 9.4e-25 118.2 300 36.7
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 1.6e-24 117.5 302 35.8
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 2.1e-24 117.1 274 34.7
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.7e-24 116.7 276 38.4
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 2.7e-24 116.7 316 33.2
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 3.6e-24 116.3 302 33.8
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 3.6e-24 116.3 294 37.4
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 6.1e-24 115.5 302 36.8
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 6.1e-24 115.5 276 33.3
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 1.8e-23 114.0 289 33.6
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 1.8e-23 114.0 258 37.2
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 2.3e-23 113.6 319 34.8
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 2.3e-23 113.6 295 33.9
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 1.5e-22 110.9 294 33.3
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 4.4e-22 109.4 284 34.5
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 7.5e-22 108.6 293 36.5
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 1.3e-21 107.8 272 34.9
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 1.3e-21 107.8 159 45.9
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 2.8e-21 106.7 311 33.8
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 3.7e-21 106.3 302 33.8
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 6.3e-21 105.5 222 36.5
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 6.3e-21 105.5 289 36.7
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 8.2e-21 105.1 217 37.3
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 1.1e-20 104.8 271 35.4
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.1e-20 104.8 301 35.9
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 1.4e-20 104.4 166 45.2
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 1.8e-20 104.0 313 31.0
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 1.8e-20 104.0 304 32.2
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 1.8e-20 104.0 221 38.0
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 2.4e-20 103.6 293 33.1
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 3.1e-20 103.2 289 36.0
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 4.1e-20 102.8 277 32.1
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 5.3e-20 102.4 167 42.5
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 9.1e-20 101.7 297 32.7
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 1.6e-19 100.9 299 32.4
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 2.7e-19 100.1 296 32.4
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 4.5e-19 99.4 105 50.5
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 5.9e-19 99.0 182 37.9
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 7.7e-19 98.6 97 50.5
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 1.3e-18 97.8 164 40.2
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 1.3e-18 97.8 283 32.2
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 1.3e-18 97.8 253 34.8
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 1.7e-18 97.4 183 38.3
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 5.0e-18 95.9 265 35.5
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 6.5e-18 95.5 264 34.1
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 1.5e-17 94.4 294 31.3
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 1.9e-17 94.0 99 54.5
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 2.5e-17 93.6 299 31.8
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 2.1e-16 90.5 291 29.9
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 4.7e-16 89.4 257 29.6
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 6.1e-16 89.0 301 31.6
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 8.0e-16 88.6 191 35.6
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 1.0e-15 88.2 166 37.3
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 1.4e-15 87.8 286 33.2
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 1.4e-15 87.8 285 32.3
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.8e-15 87.4 278 30.6
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 3.0e-15 86.7 178 38.8
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 1.2e-14 84.7 294 29.3
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 1.2e-14 84.7 176 33.5
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.5e-14 84.3 299 28.4
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 3.4e-14 83.2 255 32.2
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 5.7e-14 82.4 229 34.5
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 7.5e-14 82.0 236 35.2
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 1.7e-13 80.9 302 30.5
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 2.8e-13 80.1 284 28.2
BcaC03g13578 Brassica carinata HOM05D003715 ORTHO05D003958 2.4e-12 77.0 98 46.9
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 3.1e-12 76.6 175 33.7
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 1.2e-11 74.7 251 31.5
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 2.0e-11 73.9 266 30.5
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 4.5e-11 72.8 93 48.4
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 4.5e-11 72.8 249 32.5
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 1.0e-10 71.6 95 45.3
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 2.2e-10 70.5 280 29.6
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 2.9e-10 70.1 106 42.5
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 2.9e-10 70.1 68 54.4
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 8.5e-10 68.6 266 32.0
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 5.5e-09 65.9 270 26.3
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 7.2e-09 65.5 155 31.6
FAN19G0160 Fragaria x ananassa HOM05D003715 ORTHO05D003958 9.4e-09 65.1 274 29.9
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 1.2e-08 64.7 275 26.9
HPP92_014229 Vanilla planifolia HOM05D035551 ORTHO05D003958 1.2e-08 64.7 186 30.6
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 8.0e-08 62.0 207 31.9
Duzib106G0556 Durio zibethinus HOM05D003715 ORTHO05D003958 1.4e-07 61.2 223 31.8
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 1.2e-06 58.2 140 30.0


User provided reference genes

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