Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G03370 Arabidopsis thaliana HOM05D002996 ORTHO05D021455 1.5e-99 366.3 199 100.0
Carub.0003s0254 Capsella rubella HOM05D002996 ORTHO05D003536 1.2e-13 80.9 59 72.9
CARHR077410 Cardamine hirsuta HOM05D002996 ORTHO05D003536 1.2e-13 80.9 59 72.9
AL3G13060 Arabidopsis lyrata HOM05D002996 ORTHO05D003536 2.1e-13 80.1 59 72.9
AT3G03380 Arabidopsis thaliana HOM05D002996 ORTHO05D003536 2.8e-13 79.7 59 72.9
BcaC05g30278 Brassica carinata HOM05D002996 ORTHO05D003536 3.1e-12 76.3 59 71.2
BcaC05g30533 Brassica carinata HOM05D002996 ORTHO05D003536 3.1e-12 76.3 59 71.2
C05p63430 Brassica napus HOM05D002996 ORTHO05D003536 3.1e-12 76.3 59 71.2
BolC5t35007H Brassica oleracea HOM05D002996 ORTHO05D003536 3.1e-12 76.3 59 71.2
Thhalv10019951m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 3.1e-12 76.3 59 71.2
BcaC09g47743 Brassica carinata HOM05D002996 ORTHO05D003536 4.0e-12 75.9 59 69.5
A06p26370 Brassica napus HOM05D002996 ORTHO05D003536 4.0e-12 75.9 59 69.5
BNapus_Darmor_BZH_scaffold_162p00130 Brassica napus HOM05D002996 ORTHO05D003536 4.0e-12 75.9 59 69.5
BNapus_Darmor_BZH_scaffold_78p00120 Brassica napus HOM05D002996 ORTHO05D003536 4.0e-12 75.9 59 69.5
BolC1t05834H Brassica oleracea HOM05D002996 ORTHO05D003536 4.0e-12 75.9 59 69.5
BraA01t04583Z Brassica rapa HOM05D002996 ORTHO05D003536 4.0e-12 75.9 59 69.5
A05p43840 Brassica napus HOM05D002996 ORTHO05D003536 8.9e-12 74.7 59 69.5
BraA05t23122Z Brassica rapa HOM05D002996 ORTHO05D003536 8.9e-12 74.7 59 69.5
Aa31LG5G13900 Aethionema arabicum HOM05D002996 ORTHO05D003536 2.0e-11 73.6 40 87.5
Sp3g02390 Schrenkiella parvula HOM05D002996 ORTHO05D003536 4.4e-11 72.4 59 64.4
BcaC05g30304 Brassica carinata HOM05D002501 ORTHO05D002952 1.7e-10 70.5 33 90.9
AL3G12940 Arabidopsis lyrata HOM05D002501 ORTHO05D002952 4.9e-10 68.9 32 96.9
AT3G03310 Arabidopsis thaliana HOM05D002501 ORTHO05D002952 4.9e-10 68.9 32 96.9
Aa31LG5G13790 Aethionema arabicum HOM05D002501 ORTHO05D002952 6.4e-10 68.6 32 93.8
CARHR077350 Cardamine hirsuta HOM05D002501 ORTHO05D002952 6.4e-10 68.6 32 93.8
Thhalv10020730m.g Eutrema salsugineum HOM05D002501 ORTHO05D002952 6.4e-10 68.6 32 93.8
Oeu000903.1 Olea europaea HOM05D002996 ORTHO05D003536 8.3e-10 68.2 40 80.0
Carub.0003s0248 Capsella rubella HOM05D002501 ORTHO05D002952 1.4e-09 67.4 32 90.6
Nitab4.5_0003360g0070 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.9e-09 67.0 47 72.3
Peaxi162Scf00003g00013 Petunia axillaris HOM05D002996 ORTHO05D003536 1.9e-09 67.0 40 82.5
Oeu047419.3 Olea europaea HOM05D002996 ORTHO05D003536 2.4e-09 66.6 40 77.5
Sp3g02340 Schrenkiella parvula HOM05D002501 ORTHO05D002952 5.4e-09 65.5 32 90.6
THA.LOC104820844 Tarenaya hassleriana HOM05D002501 ORTHO05D002952 5.4e-09 65.5 118 38.1
Nitab4.5_0004399g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 7.0e-09 65.1 40 80.0
THA.LOC104827237 Tarenaya hassleriana HOM05D002996 ORTHO05D003536 7.0e-09 65.1 40 75.0
Glyma.18G039000 Glycine max HOM05D002996 ORTHO05D003536 1.6e-08 63.9 59 57.6
Ciclev10010941m.g Citrus clementina HOM05D002996 ORTHO05D003536 2.0e-08 63.5 40 75.0
Duzib133G0038 Durio zibethinus HOM05D002996 ORTHO05D003536 2.0e-08 63.5 40 75.0
Peaxi162Scf00118g00223 Petunia axillaris HOM05D002996 ORTHO05D003536 2.0e-08 63.5 40 75.0
Sabra17G0107000 Salix brachista HOM05D002996 ORTHO05D003536 2.0e-08 63.5 40 75.0
SalBow7G0652 Salvia bowleyana HOM05D002996 ORTHO05D003536 2.0e-08 63.5 40 75.0
CDE10G0501 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 2.7e-08 63.2 40 70.0
Potri.017G128300 Populus trichocarpa HOM05D002996 ORTHO05D003536 2.7e-08 63.2 40 75.0
SGA_v2.0_scaffold13G06389 Striga asiatica HOM05D002996 ORTHO05D003536 2.7e-08 63.2 40 72.5
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 3.5e-08 62.8 32 84.4
COL.COLO4_32063 Corchorus olitorius HOM05D002501 ORTHO05D002952 3.5e-08 62.8 50 60.0
Migut.L00466 Erythranthe guttata HOM05D002996 ORTHO05D003536 3.5e-08 62.8 40 75.0
CANSAT78G2389 Cannabis sativa HOM05D002996 ORTHO05D003536 4.6e-08 62.4 40 72.5
Dinv14879 Davidia involucrata HOM05D002996 ORTHO05D003536 4.6e-08 62.4 40 75.0
Gohir.A08G052700 Gossypium hirsutum HOM05D002996 ORTHO05D003536 4.6e-08 62.4 40 77.5
Gohir.A11G162100 Gossypium hirsutum HOM05D002996 ORTHO05D003536 4.6e-08 62.4 40 72.5
Gohir.D08G062300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 4.6e-08 62.4 40 77.5
Gohir.D11G168300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 4.6e-08 62.4 40 72.5
Gorai.004G064500 Gossypium raimondii HOM05D002996 ORTHO05D003536 4.6e-08 62.4 40 77.5
Gorai.007G179800 Gossypium raimondii HOM05D002996 ORTHO05D003536 4.6e-08 62.4 40 72.5
Aqoxy3G00131_Aqoxy3G00132 Aquilegia oxysepala HOM05D002996 ORTHO05D003536 6.0e-08 62.0 59 54.2
CAN.G625.86 Capsicum annuum HOM05D002996 ORTHO05D003536 6.0e-08 62.0 40 75.0
ClCG05G010970 Citrullus lanatus HOM05D002996 ORTHO05D003536 6.0e-08 62.0 40 75.0
MELO3C020288.2 Cucumis melo HOM05D002996 ORTHO05D003536 6.0e-08 62.0 40 75.0
CsaV3_1G027810 Cucumis sativus L. HOM05D002996 ORTHO05D003536 6.0e-08 62.0 40 75.0
CsaV3_3G021610 Cucumis sativus L. HOM05D002996 ORTHO05D003536 6.0e-08 62.0 40 75.0
ECA232G3169 Erigeron canadensis HOM05D002996 ORTHO05D003536 6.0e-08 62.0 40 72.5
Lsat_1_v5_gn_4_154680 Lactuca sativa HOM05D002996 ORTHO05D003536 6.0e-08 62.0 40 70.0
MSTRG.15319 Avicennia marina HOM05D002996 ORTHO05D003536 7.8e-08 61.6 40 72.5
Manes.01G115900 Manihot esculenta HOM05D002996 ORTHO05D003536 7.8e-08 61.6 40 72.5
Thecc.05G187600 Theobroma cacao HOM05D002501 ORTHO05D002952 7.8e-08 61.6 32 84.4
vmacro05506 Vaccinium macrocarpon HOM05D002996 ORTHO05D021455 7.8e-08 61.6 53 54.7
Zm00001eb252510 Zea mays HOM05D002996 ORTHO05D003536 7.8e-08 61.6 59 54.2
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 1.0e-07 61.2 32 81.2
BolC5t35011H Brassica oleracea HOM05D002501 ORTHO05D002952 1.0e-07 61.2 32 81.2
Duzib211G0161 Durio zibethinus HOM05D002996 ORTHO05D003536 1.0e-07 61.2 40 75.0
MBI16_g14303_MAGBIO Magnolia biondii HOM05D002996 ORTHO05D003536 1.0e-07 61.2 40 75.0
Sed0026936 Sechium edule HOM05D002996 ORTHO05D003536 1.0e-07 61.2 40 70.0
Os02g0712000 Oryza sativa ssp. japonica HOM05D002996 ORTHO05D003536 1.3e-07 60.8 59 52.5
Rhsim08G0086100 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.3e-07 60.8 40 72.5
ATR0053G010 Amborella trichopoda HOM05D002996 ORTHO05D003536 1.7e-07 60.5 85 44.7
MSTRG.3518 Avicennia marina HOM05D002996 ORTHO05D003536 1.7e-07 60.5 59 52.5
FAN18G1791 Fragaria x ananassa HOM05D002996 ORTHO05D003536 1.7e-07 60.5 59 52.5
Glyma.11G218000 Glycine max HOM05D002996 ORTHO05D003536 1.7e-07 60.5 40 72.5
Medtr3g067695 Medicago truncatula HOM05D002996 ORTHO05D003536 1.7e-07 60.5 40 72.5
Psat5g122480 Pisum sativum HOM05D002996 ORTHO05D003536 1.7e-07 60.5 40 72.5
Thecc.04G120500 Theobroma cacao HOM05D002996 ORTHO05D003536 1.7e-07 60.5 40 75.0
vmacro05502 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.7e-07 60.5 40 72.5
GSVIVG01030858001 Vitis vinifera HOM05D002996 ORTHO05D003536 1.7e-07 60.5 40 72.5
Actinidia17658 Actinidia chinensis HOM05D002996 ORTHO05D003536 2.3e-07 60.1 40 70.0
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 2.3e-07 60.1 32 81.2
CSS0002683 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 2.3e-07 60.1 40 70.0
CSS0016713 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 2.3e-07 60.1 40 70.0
Lj6g0006116 Lotus japonicus HOM05D002996 ORTHO05D003536 2.3e-07 60.1 40 72.5
MD17G1256700 Malus domestica HOM05D002996 ORTHO05D003536 2.3e-07 60.1 40 72.5
Os09g0513100 Oryza sativa ssp. japonica HOM05D002501 ORTHO05D002952 2.3e-07 60.1 32 75.0
Prupe.3G159400 Prunus persica HOM05D002996 ORTHO05D003536 2.3e-07 60.1 40 72.5
TAR622G0566 Trochodendron aralioides HOM05D002996 ORTHO05D003536 2.3e-07 60.1 59 54.2
Zm00001eb318230 Zea mays HOM05D002501 ORTHO05D002952 2.3e-07 60.1 32 75.0
Ca_08008_v3 Cicer arietinum L. HOM05D002501 ORTHO05D002952 3.0e-07 59.7 33 75.8
HanXRQChr09g0262281 Helianthus annuus HOM05D002996 ORTHO05D003536 3.0e-07 59.7 38 68.4
Medtr3g067690 Medicago truncatula HOM05D002996 ORTHO05D003536 3.0e-07 59.7 40 70.0
Hund16206 Selenicereus undatus HOM05D002996 ORTHO05D003536 3.0e-07 59.7 40 67.5
Solyc02g091410.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 3.0e-07 59.7 40 72.5
Sopen02g036030 Solanum pennellii HOM05D002996 ORTHO05D003536 3.0e-07 59.7 40 72.5
vmacro18050 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 3.0e-07 59.7 40 70.0
Atru.chr1.1814 Acer truncatum HOM05D002996 ORTHO05D003536 3.9e-07 59.3 40 70.0
Cpa.g.sc604.6 Carica papaya HOM05D002996 ORTHO05D003536 3.9e-07 59.3 40 70.0
Ca_08163_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 3.9e-07 59.3 40 70.0
Ca_17109_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 3.9e-07 59.3 40 70.0
COL.COLO4_15722 Corchorus olitorius HOM05D002996 ORTHO05D003536 3.9e-07 59.3 40 70.0
FvH4_5g27890 Fragaria vesca HOM05D002996 ORTHO05D003536 3.9e-07 59.3 40 67.5
Manes.02G074800 Manihot esculenta HOM05D002996 ORTHO05D003536 3.9e-07 59.3 40 70.0
Cc07_g08150 Coffea canephora HOM05D002996 ORTHO05D003536 5.0e-07 58.9 40 67.5
QL11p004079 Quercus lobata HOM05D002996 ORTHO05D003536 5.0e-07 58.9 40 67.5
Rhsim10G0079400 Rhododendron simsii HOM05D002996 ORTHO05D003536 5.0e-07 58.9 40 72.5
HanXRQChr07g0193641 Helianthus annuus HOM05D002996 ORTHO05D003536 6.6e-07 58.5 40 70.0
RcHm_v2.0_Chr7g0220101 Rosa chinensis HOM05D002996 ORTHO05D003536 6.6e-07 58.5 40 70.0
SalBow1G7030 Salvia bowleyana HOM05D002996 ORTHO05D003536 6.6e-07 58.5 40 67.5
SEGI_07950 Sequoiadendron giganteum HOM05D002996 ORTHO05D021455 6.6e-07 58.5 44 61.4
TPR.G27148 Trifolium pratense HOM05D002996 ORTHO05D003536 6.6e-07 58.5 40 70.0
ATR0743G070 Amborella trichopoda HOM05D002501 ORTHO05D002952 8.6e-07 58.2 79 39.2
ECA238G4747 Erigeron canadensis HOM05D002996 ORTHO05D003536 8.6e-07 58.2 40 67.5
Eucgr.F02825 Eucalyptus grandis HOM05D002996 ORTHO05D003536 8.6e-07 58.2 40 70.0
Phvul.001G231700 Phaseolus vulgaris HOM05D002996 ORTHO05D003536 8.6e-07 58.2 40 67.5
TWI36G1318 Tripterygium wilfordii HOM05D002501 ORTHO05D002952 8.6e-07 58.2 79 41.8
VMungo1383G2581 Vigna mungo HOM05D002996 ORTHO05D003536 8.6e-07 58.2 40 67.5
CAN.G11.11 Capsicum annuum HOM05D002996 ORTHO05D003536 1.1e-06 57.8 40 70.0
MELO3C008598.2 Cucumis melo HOM05D002501 ORTHO05D002952 1.1e-06 57.8 96 39.6
HanXRQChr09g0262271 Helianthus annuus HOM05D002996 ORTHO05D003536 1.1e-06 57.8 40 62.5
Lj2C435G10 Lonicera japonica HOM05D002996 ORTHO05D003536 1.1e-06 57.8 64 50.0
Nn4g24147 Nelumbo nucifera HOM05D002996 ORTHO05D003536 1.1e-06 57.8 40 70.0
Nitab4.5_0002366g0050 Nicotiana tabacum HOM05D002996 ORTHO05D003536 1.1e-06 57.8 40 70.0
Potri.008G076300 Populus trichocarpa HOM05D002501 ORTHO05D002952 1.1e-06 57.8 52 55.8
Sabra08G0056700 Salix brachista HOM05D002501 ORTHO05D002952 1.1e-06 57.8 52 55.8
Lalb_Chr15g0084771 Lupinus albus HOM05D002996 ORTHO05D003536 1.5e-06 57.4 40 67.5
MBI08_g18906_MAGBIO Magnolia biondii HOM05D002501 ORTHO05D002952 1.5e-06 57.4 30 83.3
arahy.Tifrunner.gnm1.ann1.GD0F1M Arachis hypogaea HOM05D002996 ORTHO05D003536 1.9e-06 57.0 40 67.5
arahy.Tifrunner.gnm1.ann1.RDL55E Arachis hypogaea HOM05D002996 ORTHO05D003536 1.9e-06 57.0 40 67.5
Migut.H00264 Erythranthe guttata HOM05D002996 ORTHO05D003536 1.9e-06 57.0 40 67.5
PSO017G4487 Papaver somniferum HOM05D002996 ORTHO05D003536 1.9e-06 57.0 40 67.5
PSO478G4946 Papaver somniferum HOM05D002996 ORTHO05D003536 1.9e-06 57.0 40 67.5
EL10Ac2g04480 Beta vulgaris HOM05D002996 ORTHO05D003536 2.5e-06 56.6 40 65.0
Haze_04600 Corylus avellana HOM05D002501 ORTHO05D002952 2.5e-06 56.6 41 63.4
Eucgr.K00007 Eucalyptus grandis HOM05D002501 ORTHO05D002952 2.5e-06 56.6 89 36.0
Glyma.18G244500 Glycine max HOM05D002501 ORTHO05D002952 2.5e-06 56.6 30 80.0
Nitab4.5_0000465g0030 Nicotiana tabacum HOM05D002996 ORTHO05D003536 2.5e-06 56.6 40 67.5
Rhsim10G0079500 Rhododendron simsii HOM05D002996 ORTHO05D003536 2.5e-06 56.6 40 67.5
TWI74G1665 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 2.5e-06 56.6 40 65.0
TWI77G0049 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 2.5e-06 56.6 40 65.0
Ah.16g101290 Amaranthus hybridus HOM05D002996 ORTHO05D003536 3.3e-06 56.2 40 65.0
AUR62023190 Chenopodium quinoa HOM05D002996 ORTHO05D003536 3.3e-06 56.2 40 65.0
AUR62023237 Chenopodium quinoa HOM05D002996 ORTHO05D003536 3.3e-06 56.2 40 65.0
Haze_14227 Corylus avellana HOM05D002996 ORTHO05D003536 3.3e-06 56.2 40 65.0
TAR374G0579 Trochodendron aralioides HOM05D002996 ORTHO05D003536 3.3e-06 56.2 59 50.8
GSVIVG01019050001 Vitis vinifera HOM05D002501 ORTHO05D002952 3.3e-06 56.2 29 86.2
Eucgr.B01436 Eucalyptus grandis HOM05D002501 ORTHO05D002952 4.3e-06 55.8 89 34.8
Medtr7g080450 Medicago truncatula HOM05D002501 ORTHO05D002952 4.3e-06 55.8 32 75.0
Psat3g137960 Pisum sativum HOM05D002501 ORTHO05D002952 4.3e-06 55.8 32 75.0
PGR004G1736 Punica granatum HOM05D002996 ORTHO05D003536 4.3e-06 55.8 40 65.0
Sabra04G0059000 Salix brachista HOM05D002996 ORTHO05D003536 4.3e-06 55.8 40 65.0
TPR.G16811 Trifolium pratense HOM05D002501 ORTHO05D002952 4.3e-06 55.8 32 75.0
Aqoxy2G04087 Aquilegia oxysepala HOM05D002501 ORTHO05D002952 5.6e-06 55.5 50 52.0
MD04G1247600 Malus domestica HOM05D002501 ORTHO05D002952 5.6e-06 55.5 32 75.0
Prupe.6G364000 Prunus persica HOM05D002501 ORTHO05D002952 5.6e-06 55.5 32 75.0
Hund07370 Selenicereus undatus HOM05D002501 ORTHO05D002952 5.6e-06 55.5 79 41.8
CiPaw.03G068800 Carya illinoinensis HOM05D002996 ORTHO05D003536 7.3e-06 55.1 40 65.0
Lj8A197T40 Lonicera japonica HOM05D002501 ORTHO05D002952 7.3e-06 55.1 32 75.0
Peaxi162Scf00296g00910 Petunia axillaris HOM05D002501 ORTHO05D002952 7.3e-06 55.1 79 39.2
Sabra04G0059100 Salix brachista HOM05D002996 ORTHO05D003536 7.3e-06 55.1 40 65.0
Sopen03g007520 Solanum pennellii HOM05D002996 ORTHO05D003536 7.3e-06 55.1 40 67.5
Cfa007838 Carpinus fangiana HOM05D002996 ORTHO05D003536 9.5e-06 54.7 40 62.5
Nitab4.5_0003303g0020 Nicotiana tabacum HOM05D002501 ORTHO05D002952 9.5e-06 54.7 52 51.9
Potri.004G088600 Populus trichocarpa HOM05D002996 ORTHO05D003536 9.5e-06 54.7 40 62.5
Potri.004G088700 Populus trichocarpa HOM05D002996 ORTHO05D003536 9.5e-06 54.7 40 65.0
TPR.G27497 Trifolium pratense HOM05D002996 ORTHO05D003536 9.5e-06 54.7 73 47.9


User provided reference genes

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