Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 8.6e-134 480.3 245 100.0
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 2.1e-116 422.5 246 88.2
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 3.2e-112 408.7 243 85.6
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.8e-107 392.9 240 83.3
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.5e-106 389.8 244 81.1
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 3.2e-104 382.1 251 79.7
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 1.5e-101 373.2 250 77.6
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 2.5e-101 372.5 250 77.6
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 3.3e-101 372.1 250 77.2
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 7.4e-101 370.9 250 76.8
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 1.2e-98 363.6 251 76.5
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.5e-85 320.1 260 68.1
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 1.0e-81 307.4 254 65.4
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 2.1e-63 246.5 265 50.9
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 3.0e-62 242.7 253 52.6
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 8.8e-62 241.1 259 52.1
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 2.0e-61 240.0 242 53.3
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.4e-59 233.8 266 50.4
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.8e-59 233.4 266 50.0
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 4.1e-59 232.3 271 47.2
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 5.4e-59 231.9 270 48.1
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 2.0e-58 229.9 264 50.8
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 5.9e-58 228.4 261 49.0
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 8.6e-57 224.6 259 48.3
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 1.1e-56 224.2 263 49.0
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 1.9e-56 223.4 254 50.8
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 4.2e-56 222.2 254 51.2
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 7.2e-56 221.5 258 49.2
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 1.2e-55 220.7 256 49.2
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 1.6e-55 220.3 264 47.3
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 4.7e-55 218.8 259 47.1
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 4.7e-55 218.8 256 47.7
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 8.0e-55 218.0 270 47.8
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 1.8e-54 216.9 227 51.5
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 2.3e-54 216.5 270 47.8
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 4.0e-54 215.7 273 45.8
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 5.2e-54 215.3 253 46.2
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 6.8e-54 214.9 261 47.5
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.5e-53 213.8 255 49.8
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 2.0e-53 213.4 237 50.6
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 3.4e-53 212.6 260 46.9
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 3.4e-53 212.6 280 44.3
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 4.4e-53 212.2 259 47.5
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 7.5e-53 211.5 233 51.5
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 7.5e-53 211.5 227 52.4
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 1.3e-52 210.7 247 47.4
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 1.7e-52 210.3 244 49.2
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 1.7e-52 210.3 250 47.2
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 2.8e-52 209.5 233 51.1
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 3.7e-52 209.1 264 47.3
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 4.9e-52 208.8 231 50.2
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 6.3e-52 208.4 247 47.4
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 1.4e-51 207.2 257 44.7
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 1.4e-51 207.2 290 44.8
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 1.8e-51 206.8 262 43.1
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 1.8e-51 206.8 262 45.4
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 3.1e-51 206.1 262 44.7
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 5.4e-51 205.3 266 44.0
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 7.0e-51 204.9 264 46.6
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 1.2e-50 204.1 258 45.7
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 2.7e-50 203.0 265 47.9
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.7e-50 203.0 228 50.9
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 4.5e-50 202.2 258 45.7
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.0e-49 201.1 256 43.8
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 2.3e-49 199.9 247 49.0
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 2.3e-49 199.9 262 42.0
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 2.3e-49 199.9 301 42.2
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 2.3e-49 199.9 263 45.6
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 6.6e-49 198.4 268 43.7
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 8.6e-49 198.0 234 49.1
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 8.6e-49 198.0 234 49.1
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 2.5e-48 196.4 234 45.3
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 2.5e-48 196.4 254 44.5
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 5.6e-48 195.3 235 47.7
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 7.3e-48 194.9 265 44.5
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 9.5e-48 194.5 264 45.8
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 9.5e-48 194.5 253 45.5
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 1.2e-47 194.1 260 45.4
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 6.1e-47 191.8 235 44.7
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 8.0e-47 191.4 252 44.8
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 1.4e-46 190.7 257 44.7
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 6.8e-46 188.3 147 66.0
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 8.9e-46 188.0 251 44.6
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 8.9e-46 188.0 196 50.0
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 4.4e-45 185.7 211 50.2
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 7.5e-45 184.9 258 42.2
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 1.3e-44 184.1 257 42.0
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 3.7e-44 182.6 151 58.3
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 1.8e-43 180.3 260 43.1
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 4.1e-43 179.1 232 47.0
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 5.4e-43 178.7 249 42.2
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 2.7e-42 176.4 249 42.6
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 5.9e-42 175.3 258 41.5
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 3.9e-41 172.6 209 45.0
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 5.6e-40 168.7 255 39.2
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 9.5e-40 167.9 283 38.5
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.6e-39 167.2 259 37.5
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 2.1e-39 166.8 283 38.2
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 4.7e-39 165.6 261 38.3
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 4.7e-39 165.6 259 38.6
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 8.0e-39 164.9 277 36.8
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.4e-38 164.1 249 38.6
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 1.8e-38 163.7 265 40.4
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 2.3e-38 163.3 249 39.4
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 5.2e-38 162.2 257 38.9
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 2.0e-37 160.2 213 45.1
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 2.6e-37 159.8 246 39.4
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 9.8e-37 157.9 249 37.8
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 1.3e-36 157.5 262 38.5
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 2.2e-36 156.8 282 35.1
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 2.2e-36 156.8 213 44.6
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 2.9e-36 156.4 250 36.8
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 3.2e-35 152.9 239 39.7
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 7.0e-35 151.8 164 47.0
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 2.0e-34 150.2 250 38.0
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 2.0e-34 150.2 260 36.9
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 2.0e-34 150.2 250 38.0
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 3.9e-33 146.0 250 37.2
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 5.0e-33 145.6 268 35.4
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 6.6e-33 145.2 161 50.9
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 1.5e-32 144.1 261 37.5
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 7.3e-32 141.7 229 40.2
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 6.8e-30 135.2 192 39.6
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 2.6e-29 133.3 100 67.0
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 4.9e-28 129.0 167 45.5
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 2.4e-27 126.7 180 42.2
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 1.2e-26 124.4 131 51.1
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 5.1e-25 119.0 215 35.3
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 6.6e-25 118.6 283 30.0
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 1.5e-24 117.5 96 60.4
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 1.9e-24 117.1 244 32.0
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 2.0e-21 107.1 65 73.8
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 4.4e-21 105.9 215 34.4
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 9.2e-19 98.2 181 30.9
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 3.0e-17 93.2 171 33.9
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 6.6e-17 92.0 84 54.8
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 1.1e-16 91.3 77 64.9
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 3.3e-16 89.7 157 37.6
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 6.2e-15 85.5 81 56.8
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 1.4e-14 84.3 107 43.9
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 5.6e-08 62.4 55 58.2


User provided reference genes

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