Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 0.0e+00 1495.7 744 100.0
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 0.0e+00 1430.2 746 95.3
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 0.0e+00 1418.3 744 94.2
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 0.0e+00 1365.5 743 91.0
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 0.0e+00 1362.1 744 90.2
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 0.0e+00 1324.7 737 89.1
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 0.0e+00 1248.4 752 82.6
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 0.0e+00 1245.3 754 82.0
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 0.0e+00 1235.7 751 81.4
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 0.0e+00 1231.1 750 81.7
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 0.0e+00 1219.1 733 83.5
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 0.0e+00 1155.6 729 78.6
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 2.9e-297 1025.0 737 72.7
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 3.5e-271 938.3 714 64.1
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 4.6e-271 937.9 724 62.8
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.7e-270 936.0 740 62.6
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 1.9e-269 932.6 725 62.8
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 2.8e-268 928.7 712 64.0
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 2.9e-265 918.7 748 61.6
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 6.4e-265 917.5 743 61.1
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 8.4e-265 917.1 732 62.3
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 1.9e-264 916.0 703 63.0
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 2.4e-264 915.6 711 62.9
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 9.3e-264 913.7 705 62.3
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 2.7e-263 912.1 706 62.9
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 2.3e-262 909.1 702 64.0
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 1.9e-261 906.0 731 61.7
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 7.6e-258 894.0 701 61.9
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 1.7e-257 892.9 773 57.6
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 1.1e-256 890.2 730 60.0
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 1.9e-256 889.4 730 60.0
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 4.6e-255 884.8 723 60.6
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 5.1e-254 881.3 734 60.4
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 2.5e-253 879.0 704 60.7
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 1.6e-252 876.3 699 60.9
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 1.6e-252 876.3 736 59.9
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 2.4e-251 872.5 729 60.1
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 3.4e-250 868.6 693 60.5
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 1.3e-249 866.7 703 60.9
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 5.5e-248 861.3 723 59.6
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 9.3e-248 860.5 703 60.5
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 2.1e-247 859.4 694 60.7
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 2.7e-247 859.0 723 60.0
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 1.8e-246 856.3 721 59.8
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 2.3e-246 855.9 705 60.9
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 2.8e-244 849.0 727 57.8
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 9.0e-243 844.0 700 60.7
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 2.0e-242 842.8 741 57.5
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 5.9e-242 841.3 723 58.2
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 5.9e-242 841.3 721 58.8
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 1.7e-241 839.7 694 60.7
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 4.2e-240 835.1 706 57.6
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 6.1e-239 831.2 738 57.5
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 1.0e-238 830.5 709 57.5
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 8.8e-238 827.4 706 57.4
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 4.3e-237 825.1 721 58.8
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 1.3e-236 823.5 728 57.4
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 2.2e-236 822.8 712 57.4
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 2.8e-236 822.4 728 57.3
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 1.4e-235 820.1 605 64.3
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 6.9e-235 817.8 724 56.9
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 1.5e-234 816.6 727 56.7
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 1.3e-228 797.0 735 56.3
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 2.2e-228 796.2 727 56.3
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.4e-227 793.5 729 56.2
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 5.3e-227 791.6 722 55.7
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 7.7e-226 787.7 748 54.7
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 3.8e-225 785.4 731 54.4
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 7.2e-224 781.2 727 54.9
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 4.7e-223 778.5 731 54.0
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 3.0e-222 775.8 742 55.5
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 1.3e-220 770.4 621 61.7
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 1.4e-219 766.9 700 55.4
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 1.2e-218 763.8 737 54.4
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 1.2e-218 763.8 707 55.3
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 4.5e-218 761.9 742 54.6
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 1.5e-216 756.9 701 54.4
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 2.3e-214 749.6 763 52.7
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 8.3e-212 741.1 656 55.8
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 1.1e-211 740.7 729 50.5
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 6.5e-209 731.5 679 54.1
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 3.6e-207 725.7 663 55.1
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 8.3e-204 714.5 645 55.7
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.4e-203 713.8 732 50.7
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 4.1e-203 712.2 699 53.9
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 1.2e-202 710.7 726 51.7
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 1.3e-201 707.2 732 49.6
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.9e-201 706.1 731 50.1
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.0e-198 697.6 695 51.7
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 4.4e-197 692.2 742 49.7
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 1.8e-190 670.2 634 52.7
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 1.7e-188 663.7 550 58.9
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.0e-181 640.2 739 45.7
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 2.4e-179 633.3 732 46.4
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.7e-177 627.1 605 53.2
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 8.1e-167 591.7 475 59.2
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.7e-161 573.9 722 45.8
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 1.7e-156 557.4 640 49.7
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 2.8e-143 513.5 528 52.8
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 1.1e-139 501.5 360 64.7
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 2.0e-133 480.7 433 56.4
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 4.6e-122 443.0 664 39.6
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 2.8e-119 433.7 744 35.6
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.0e-116 425.2 646 37.2
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 1.6e-114 417.9 825 35.3
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 3.6e-114 416.8 608 39.0
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 5.3e-110 402.9 730 34.8
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 2.6e-104 384.0 791 33.1
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 3.3e-104 383.6 693 35.2
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 1.2e-93 348.6 362 48.3
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 4.9e-87 326.6 345 51.0
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 1.5e-83 315.1 334 50.3
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 4.0e-73 280.4 285 51.6
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 2.0e-64 251.5 559 31.5
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 1.1e-57 229.2 178 65.7
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 1.4e-57 228.8 190 55.3
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 2.0e-56 224.9 138 76.1
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 6.0e-53 213.4 339 36.9
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 6.6e-52 209.9 141 68.8
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 1.6e-50 205.3 166 56.6
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 3.6e-42 177.6 500 28.6
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 8.7e-36 156.4 91 81.3
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 7.1e-30 136.7 163 41.7
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 2.6e-24 118.2 105 50.5
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 6.9e-17 93.6 123 47.2
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 1.0e-15 89.7 394 24.9
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 1.0e-12 79.7 105 38.1
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 7.4e-11 73.6 80 45.0
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 6.3e-10 70.5 80 41.2
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 2.6e-08 65.1 128 35.9
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 4.5e-08 64.3 88 43.2
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 2.2e-07 62.0 72 51.4
Ciclev10023289m.g Citrus clementina HOM05D005923 ORTHO05D007376 3.2e-06 58.2 47 53.2
CDE07G1406 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 4.2e-06 57.8 49 59.2


User provided reference genes

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