Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G03170 Arabidopsis thaliana HOM05D009715 ORTHO05D011857 5.4e-81 304.3 157 100.0
AL3G12780 Arabidopsis lyrata HOM05D009715 ORTHO05D011857 2.1e-72 275.8 159 92.5
BraA01t04588Z Brassica rapa HOM05D009715 ORTHO05D011857 7.6e-67 257.3 157 86.6
Thhalv10021675m.g Eutrema salsugineum HOM05D009715 ORTHO05D011857 6.5e-66 254.2 159 84.9
BraSC90t46709Z Brassica rapa HOM05D009715 ORTHO05D011857 3.0e-63 245.4 157 84.7
A05p44010 Brassica napus HOM05D009715 ORTHO05D011857 5.1e-63 244.6 157 84.1
C05p63630 Brassica napus HOM05D009715 ORTHO05D011857 6.7e-63 244.2 157 84.7
Carub.0003s0232 Capsella rubella HOM05D009715 ORTHO05D011857 3.3e-62 241.9 160 84.4
BcaC01g04409 Brassica carinata HOM05D009715 ORTHO05D011857 4.1e-60 235.0 157 84.1
C03p40500 Brassica napus HOM05D009715 ORTHO05D011857 4.1e-60 235.0 157 84.1
BolC3t16314H Brassica oleracea HOM05D009715 ORTHO05D011857 4.1e-60 235.0 157 84.1
BraA03t12496Z Brassica rapa HOM05D009715 ORTHO05D011857 5.9e-59 231.1 157 82.8
A03p33240 Brassica napus HOM05D009715 ORTHO05D011857 5.0e-58 228.0 157 81.5
BcaNung05520 Brassica carinata HOM05D009715 ORTHO05D011857 1.2e-56 223.4 158 79.1
Aa31LG5G13650 Aethionema arabicum HOM05D009715 ORTHO05D011857 1.5e-54 216.5 134 85.8
Sp3g02210 Schrenkiella parvula HOM05D009715 ORTHO05D011857 1.5e-54 216.5 154 75.3
BcaB04g19372 Brassica carinata HOM05D009715 ORTHO05D011857 3.3e-54 215.3 157 77.1
BcaC09g47729 Brassica carinata HOM05D009715 ORTHO05D011857 1.5e-51 206.5 157 73.2
BNapus_Darmor_BZH_scaffold_162p00050 Brassica napus HOM05D009715 ORTHO05D011857 7.7e-51 204.1 157 72.6
BolC1t05842H Brassica oleracea HOM05D009715 ORTHO05D011857 7.7e-51 204.1 157 72.6
CARHR077190 Cardamine hirsuta HOM05D009715 ORTHO05D011857 7.7e-51 204.1 157 72.6
A06p26290 Brassica napus HOM05D009715 ORTHO05D011857 2.2e-50 202.6 157 72.0
BNapus_Darmor_BZH_scaffold_78p00040 Brassica napus HOM05D009715 ORTHO05D011857 2.2e-50 202.6 157 72.0
BcaC01g04404 Brassica carinata HOM05D009715 ORTHO05D011857 3.2e-49 198.7 157 70.7
BolC5t35032H Brassica oleracea HOM05D009715 ORTHO05D011857 2.4e-44 182.6 150 70.7
THA.LOC104820871 Tarenaya hassleriana HOM05D009715 ORTHO05D011857 1.4e-41 173.3 165 65.5
BcaC05g30526 Brassica carinata HOM05D009715 ORTHO05D011857 8.3e-13 77.8 118 48.3
PGSC0003DMG402024074 Solanum tuberosum HOM05D002019 ORTHO05D002150 1.2e-08 63.9 109 37.6
Lsat_1_v5_gn_3_69461 Lactuca sativa HOM05D002019 ORTHO05D002150 1.6e-08 63.5 40 72.5
Cc07_g12670 Coffea canephora HOM05D002019 ORTHO05D002150 2.1e-08 63.2 39 74.4
vmacro20452 Vaccinium macrocarpon HOM05D002019 ORTHO05D002150 2.8e-08 62.8 99 39.4
Nitab4.5_0000091g0300 Nicotiana tabacum HOM05D002019 ORTHO05D002150 4.7e-08 62.0 39 71.8
Peaxi162Scf00521g00028 Petunia axillaris HOM05D002019 ORTHO05D002150 4.7e-08 62.0 39 71.8
SalBow5G0949 Salvia bowleyana HOM05D002019 ORTHO05D002150 1.0e-07 60.8 50 62.0
Actinidia40403 Actinidia chinensis HOM05D002019 ORTHO05D002150 1.4e-07 60.5 110 36.4
Actinidia17154 Actinidia chinensis HOM05D002019 ORTHO05D002150 2.3e-07 59.7 99 38.4
GSVIVG01035279001 Vitis vinifera HOM05D002019 ORTHO05D002150 3.0e-07 59.3 64 51.6
HanXRQChr16g0532381 Helianthus annuus HOM05D002019 ORTHO05D002150 4.0e-07 58.9 109 39.4
MSTRG.15624 Avicennia marina HOM05D002019 ORTHO05D002150 5.2e-07 58.5 84 44.0
Glyma.02G239800 Glycine max HOM05D002019 ORTHO05D002150 5.2e-07 58.5 83 41.0
arahy.Tifrunner.gnm1.ann1.TVU1YR Arachis hypogaea HOM05D002019 ORTHO05D002150 6.8e-07 58.2 60 51.7
Oeu012515.1 Olea europaea HOM05D002019 ORTHO05D002150 6.8e-07 58.2 39 66.7
arahy.Tifrunner.gnm1.ann1.ZUC4D4 Arachis hypogaea HOM05D002019 ORTHO05D002150 8.9e-07 57.8 80 51.2
Ah.01g005730 Amaranthus hybridus HOM05D002019 ORTHO05D002150 1.2e-06 57.4 42 64.3
arahy.Tifrunner.gnm1.ann1.SQC659 Arachis hypogaea HOM05D002019 ORTHO05D002150 1.2e-06 57.4 81 50.6
ECA246G2032 Erigeron canadensis HOM05D002019 ORTHO05D002150 1.2e-06 57.4 59 54.2
Glyma.18G045200 Glycine max HOM05D002019 ORTHO05D002150 1.2e-06 57.4 39 66.7
Nn4g24832 Nelumbo nucifera HOM05D002019 ORTHO05D002150 1.2e-06 57.4 106 38.7
Phvul.006G085800 Phaseolus vulgaris HOM05D002019 ORTHO05D002150 1.2e-06 57.4 39 66.7
arahy.Tifrunner.gnm1.ann1.EZ0DFJ Arachis hypogaea HOM05D002019 ORTHO05D002150 1.5e-06 57.0 60 51.7
Sc12g0010130 Simmondsia chinensis HOM05D002019 ORTHO05D002150 2.0e-06 56.6 39 66.7
HanXRQChr15g0485231 Helianthus annuus HOM05D002019 ORTHO05D002150 2.6e-06 56.2 110 41.8
TAR629G3490 Trochodendron aralioides HOM05D002019 ORTHO05D002150 3.4e-06 55.8 39 66.7
Ciclev10026542m.g Citrus clementina HOM05D002019 ORTHO05D002150 4.4e-06 55.5 42 59.5
LjContig00141g0027651 Lotus japonicus HOM05D002019 ORTHO05D002150 5.8e-06 55.1 82 46.3
Solyc03g031890.3 Solanum lycopersicum HOM05D002019 ORTHO05D002150 5.8e-06 55.1 85 43.5
TWI74G0642 Tripterygium wilfordii HOM05D002019 ORTHO05D002150 5.8e-06 55.1 42 59.5
VMungo0540G2448 Vigna mungo HOM05D002019 ORTHO05D002150 5.8e-06 55.1 39 64.1
Atru.chr1.1979 Acer truncatum HOM05D002019 ORTHO05D002150 7.5e-06 54.7 76 48.7
CANSAT56G1675 Cannabis sativa HOM05D002019 ORTHO05D002150 7.5e-06 54.7 52 51.9
DCAR_014138 Daucus carota HOM05D002019 ORTHO05D002150 7.5e-06 54.7 76 43.4
Dinv36721 Davidia involucrata HOM05D002019 ORTHO05D002150 7.5e-06 54.7 39 66.7
TAR622G0329 Trochodendron aralioides HOM05D002019 ORTHO05D002150 7.5e-06 54.7 39 64.1
RcHm_v2.0_Chr2g0094921 Rosa chinensis HOM05D002359 ORTHO05D002394 9.8e-06 54.3 128 35.2
Hund00702 Selenicereus undatus HOM05D002019 ORTHO05D002150 9.8e-06 54.3 91 41.8


User provided reference genes

Program Settings