Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 3.4e-62 241.5 122 100.0
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.4e-55 219.5 119 93.3
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 7.3e-49 197.2 124 84.7
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 2.3e-47 192.2 119 81.5
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 2.0e-46 189.1 119 82.4
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 3.7e-45 184.9 119 81.5
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 3.7e-45 184.9 119 81.5
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 4.9e-45 184.5 124 80.6
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 4.9e-45 184.5 122 81.1
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 6.4e-45 184.1 121 81.0
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 5.4e-44 181.0 122 79.5
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 3.5e-43 178.3 119 79.0
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 4.6e-43 177.9 119 79.0
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 4.6e-43 177.9 119 79.0
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 4.6e-43 177.9 119 79.0
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 4.6e-43 177.9 122 77.9
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 6.0e-43 177.6 119 79.0
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 1.7e-42 176.0 119 79.8
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 2.9e-29 132.1 122 61.5
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.9e-28 129.4 119 55.5
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 3.2e-28 128.6 117 59.8
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 7.1e-28 127.5 121 60.3
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 3.5e-27 125.2 128 57.8
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 1.0e-26 123.6 128 57.0
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 1.0e-26 123.6 128 57.0
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.0e-26 123.6 115 55.7
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 1.3e-26 123.2 125 59.2
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 1.7e-26 122.9 127 56.7
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 5.6e-25 117.9 120 55.0
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.3e-24 116.7 116 55.2
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.3e-24 116.7 123 52.8
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.6e-24 116.3 116 55.2
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 2.8e-24 115.5 117 54.7
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 1.1e-23 113.6 116 51.7
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 3.1e-23 112.1 104 55.8
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 9.0e-23 110.5 117 53.0
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 9.0e-23 110.5 118 53.4
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 1.2e-22 110.2 91 58.2
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 1.5e-22 109.8 124 51.6
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 4.4e-22 108.2 121 52.1
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 5.8e-22 107.8 117 50.4
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 9.9e-22 107.1 95 57.9
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 9.9e-22 107.1 126 49.2
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.3e-21 106.7 124 47.6
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 2.2e-21 105.9 85 57.6
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 2.9e-21 105.5 110 51.8
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 8.4e-21 104.0 88 58.0
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.1e-20 103.6 89 57.3
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 1.4e-20 103.2 120 49.2
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 4.2e-20 101.7 116 54.3
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 4.2e-20 101.7 128 49.2
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 4.2e-20 101.7 114 51.8
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 9.3e-20 100.5 90 58.9
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 9.3e-20 100.5 116 46.6
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 1.6e-19 99.8 110 53.6
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 3.5e-19 98.6 128 47.7
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.5e-19 98.6 125 44.8
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 3.5e-19 98.6 125 44.0
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 4.6e-19 98.2 124 44.4
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 4.6e-19 98.2 119 47.9
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 6.0e-19 97.8 121 46.3
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 6.0e-19 97.8 124 46.8
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 6.0e-19 97.8 112 45.5
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.3e-18 96.7 124 45.2
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.3e-18 96.7 124 45.2
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 1.7e-18 96.3 89 53.9
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.7e-18 96.3 89 53.9
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.7e-18 96.3 91 52.7
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.3e-18 95.9 120 50.0
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 6.6e-18 94.4 120 48.3
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 8.7e-18 94.0 89 52.8
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 1.1e-17 93.6 88 51.1
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.1e-17 93.6 121 46.3
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 2.5e-17 92.4 115 47.0
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 2.5e-17 92.4 116 45.7
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.5e-17 92.4 83 56.6
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 2.5e-17 92.4 91 50.5
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 2.5e-17 92.4 123 46.3
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 3.3e-17 92.0 112 47.3
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 3.3e-17 92.0 110 49.1
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 4.3e-17 91.7 86 53.5
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 5.6e-17 91.3 113 47.8
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 5.6e-17 91.3 101 47.5
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 5.6e-17 91.3 104 51.9
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 7.3e-17 90.9 105 45.7
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 1.3e-16 90.1 90 51.1
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 1.3e-16 90.1 125 45.6
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.6e-16 89.7 125 45.6
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.1e-16 89.4 83 54.2
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.1e-16 89.4 116 46.6
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.8e-16 89.0 101 47.5
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 2.8e-16 89.0 120 44.2
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 2.8e-16 89.0 116 46.6
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 8.1e-16 87.4 124 47.6
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 8.1e-16 87.4 91 50.5
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.1e-15 87.0 94 52.1
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 1.1e-15 87.0 113 45.1
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 1.1e-15 87.0 88 51.1
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 1.8e-15 86.3 124 41.9
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 1.8e-15 86.3 115 48.7
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 2.4e-15 85.9 90 52.2
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 3.1e-15 85.5 115 48.7
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 4.0e-15 85.1 97 50.5
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 4.0e-15 85.1 130 42.3
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 4.0e-15 85.1 100 47.0
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 4.0e-15 85.1 121 45.5
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 4.0e-15 85.1 112 48.2
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 4.0e-15 85.1 87 55.2
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 5.3e-15 84.7 86 51.2
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 1.5e-14 83.2 87 52.9
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 2.0e-14 82.8 80 55.0
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 2.0e-14 82.8 121 43.0
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.6e-14 82.4 118 41.5
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.6e-14 82.4 118 41.5
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.6e-14 82.4 118 41.5
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 2.6e-14 82.4 118 41.5
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 2.6e-14 82.4 94 48.9
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.6e-14 82.4 97 47.4
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 2.6e-14 82.4 116 44.8
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 3.4e-14 82.0 119 44.5
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 3.4e-14 82.0 86 50.0
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 5.8e-14 81.3 111 41.4
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 5.8e-14 81.3 88 47.7
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 5.8e-14 81.3 87 54.0
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 5.8e-14 81.3 120 41.7
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 7.6e-14 80.9 121 42.1
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 9.9e-14 80.5 90 47.8
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 9.9e-14 80.5 95 47.4
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 9.9e-14 80.5 85 51.8
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 1.3e-13 80.1 89 47.2
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 1.3e-13 80.1 89 47.2
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.7e-13 79.7 82 47.6
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 1.7e-13 79.7 113 46.0
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.2e-13 79.3 85 51.8
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 2.2e-13 79.3 82 52.4
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 2.9e-13 79.0 113 45.1
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 3.8e-13 78.6 94 43.6
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 4.9e-13 78.2 86 50.0
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 6.4e-13 77.8 109 43.1
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 8.4e-13 77.4 108 44.4
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 1.4e-12 76.6 106 41.5
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.4e-12 76.6 91 42.9
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 2.4e-12 75.9 84 50.0
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 2.4e-12 75.9 94 43.6
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.4e-12 75.9 86 48.8
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 2.4e-12 75.9 102 43.1
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 3.2e-12 75.5 99 44.4
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 4.2e-12 75.1 118 41.5
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 4.2e-12 75.1 106 44.3
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 5.4e-12 74.7 101 44.6
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 5.4e-12 74.7 64 51.6
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 5.4e-12 74.7 125 45.6
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 7.1e-12 74.3 91 47.3
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 9.3e-12 73.9 123 40.7
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.2e-11 73.6 89 44.9
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 1.2e-11 73.6 110 43.6
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.1e-11 72.8 119 41.2
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 2.7e-11 72.4 100 44.0
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 2.7e-11 72.4 80 47.5
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 4.6e-11 71.6 97 44.3
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 7.9e-11 70.9 97 42.3
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 7.9e-11 70.9 97 39.2
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.0e-10 70.5 112 37.5
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 1.0e-10 70.5 126 38.9
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 1.3e-10 70.1 109 38.5
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 1.3e-10 70.1 87 47.1
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 3.9e-10 68.6 98 42.9
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 5.1e-10 68.2 128 41.4
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 5.1e-10 68.2 94 41.5
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 6.7e-10 67.8 89 42.7
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 8.7e-10 67.4 105 42.9
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.5e-09 65.9 106 37.7
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 3.3e-09 65.5 114 36.0
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 3.3e-09 65.5 124 39.5
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 3.3e-09 65.5 127 40.9
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.3e-09 65.1 126 41.3
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 5.6e-09 64.7 99 38.4
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 7.4e-09 64.3 117 36.8
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.1e-08 62.8 45 57.8
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 2.8e-08 62.4 98 39.8
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 4.8e-08 61.6 85 40.0
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 8.1e-08 60.8 102 37.3
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.1e-07 60.5 83 39.8
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.4e-07 59.3 103 40.8
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 2.4e-07 59.3 115 35.7
HanXRQChr05g0137871 Helianthus annuus HOM05D003592 ORTHO05D029303 5.8e-06 54.7 95 36.8


User provided reference genes

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