Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 3.1e-250 868.2 521 100.0
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 9.5e-215 750.4 535 84.3
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 3.8e-155 552.4 537 70.9
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.6e-137 493.8 550 58.7
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 4.2e-130 469.2 581 57.7
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 1.5e-103 380.9 545 52.3
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 1.5e-103 380.9 545 52.3
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 8.1e-97 358.6 536 49.3
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 8.1e-97 358.6 536 49.3
Thhalv10022236m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 1.7e-91 340.9 534 50.2
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 1.5e-90 337.8 536 48.1
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 2.6e-87 327.0 559 47.6
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 9.0e-56 222.2 295 52.5
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 1.0e-54 218.8 610 35.9
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.1e-50 205.3 304 51.0
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 1.1e-50 205.3 582 37.6
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 2.8e-49 200.7 577 38.0
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 5.3e-48 196.4 566 39.0
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 1.3e-46 191.8 311 47.6
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 1.9e-45 188.0 572 35.5
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 2.1e-44 184.5 593 34.2
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 3.6e-44 183.7 329 45.0
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 2.3e-43 181.0 631 33.6
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 2.0e-42 177.9 300 48.7
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 8.2e-41 172.6 259 52.9
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 8.2e-41 172.6 255 52.5
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 2.0e-39 167.9 659 32.0
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 2.5e-37 161.0 198 58.1
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 4.7e-36 156.8 599 33.4
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 4.7e-36 156.8 616 32.8
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 3.0e-35 154.1 518 34.2
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 3.3e-34 150.6 606 33.2
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 1.8e-32 144.8 185 56.2
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 1.8e-32 144.8 185 56.2
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 7.2e-29 132.9 196 46.9
BcaC01g02808 Brassica carinata HOM05D004299 ORTHO05D003557 9.4e-29 132.5 566 33.2
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 3.0e-27 127.5 241 38.6
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 4.0e-27 127.1 271 38.4
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 5.2e-27 126.7 241 38.2
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 8.8e-27 125.9 276 36.2
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 8.8e-27 125.9 306 38.6
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 1.3e-25 122.1 291 39.9
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.7e-25 121.7 270 35.6
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 1.1e-24 119.0 311 35.0
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 1.4e-24 118.6 294 34.7
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 3.1e-24 117.5 289 37.4
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 4.1e-24 117.1 215 39.5
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 5.3e-24 116.7 272 37.1
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.2e-23 115.5 215 39.5
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 2.0e-23 114.8 229 41.0
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 3.5e-23 114.0 245 38.0
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 7.7e-23 112.8 236 36.0
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 7.7e-23 112.8 270 36.7
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 1.0e-22 112.5 260 40.0
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 1.3e-22 112.1 275 40.7
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 2.9e-22 110.9 197 40.6
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 2.9e-22 110.9 237 40.5
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 2.9e-22 110.9 213 39.0
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 3.8e-22 110.5 300 34.7
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 5.0e-22 110.2 278 39.2
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 6.5e-22 109.8 215 43.7
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 6.5e-22 109.8 279 35.5
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 8.5e-22 109.4 208 43.3
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.5e-21 108.6 263 36.9
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 1.9e-21 108.2 265 36.6
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 2.5e-21 107.8 259 36.3
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 3.2e-21 107.5 203 38.4
BcaB07g32711 Brassica carinata HOM05D004299 ORTHO05D003557 1.8e-19 101.7 161 43.5
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 1.8e-19 101.7 232 35.3
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 3.0e-19 100.9 319 31.0
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 3.0e-19 100.9 251 35.5
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 5.2e-19 100.1 200 39.5
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 1.5e-18 98.6 317 30.0
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 3.4e-18 97.4 196 37.2
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 4.4e-18 97.1 128 43.8
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 4.4e-18 97.1 284 32.0
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 5.7e-18 96.7 198 33.8
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 5.7e-18 96.7 519 27.0
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 7.5e-18 96.3 499 28.9
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 7.5e-18 96.3 256 30.5
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 6.3e-17 93.2 313 29.4
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 1.4e-16 92.0 185 41.1
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 1.8e-16 91.7 233 33.5
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 2.4e-16 91.3 513 27.9
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 2.4e-16 91.3 154 39.6
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 2.4e-16 91.3 238 34.0
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.4e-16 91.3 237 35.9
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 2.4e-16 91.3 248 35.9
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 4.1e-16 90.5 248 32.7
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 4.1e-16 90.5 136 41.9
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 4.1e-16 90.5 242 35.5
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 4.1e-16 90.5 144 40.3
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 5.4e-16 90.1 265 29.8
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 7.0e-16 89.7 183 37.2
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 7.0e-16 89.7 294 33.3
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 7.0e-16 89.7 234 34.6
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.2e-15 89.0 136 41.9
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 1.6e-15 88.6 274 37.2
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 3.5e-15 87.4 497 27.8
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 4.5e-15 87.0 286 31.1
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 5.9e-15 86.7 318 28.3
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 7.7e-15 86.3 242 34.3
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 1.3e-14 85.5 264 33.7
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.7e-14 85.1 183 36.1
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 5.0e-14 83.6 247 33.6
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 5.0e-14 83.6 309 30.7
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 1.9e-13 81.6 90 47.8
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 2.5e-13 81.3 119 42.9
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 2.5e-13 81.3 219 33.3
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 4.2e-13 80.5 256 30.9
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 4.2e-13 80.5 265 27.2
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 7.2e-13 79.7 251 28.3
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 1.2e-12 79.0 242 33.5
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.6e-12 78.6 247 33.2
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 8.0e-12 76.3 309 30.1
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 2.3e-11 74.7 317 31.9
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 2.3e-11 74.7 222 32.4
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 6.8e-11 73.2 253 30.0
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 8.8e-11 72.8 266 28.2
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 1.5e-10 72.0 183 35.5
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 1.5e-10 72.0 331 28.4
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 2.6e-10 71.2 222 32.0
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 3.4e-10 70.9 238 31.1
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 3.4e-10 70.9 312 29.2
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 4.4e-10 70.5 319 28.8
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 7.5e-10 69.7 296 30.7
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 1.3e-09 68.9 268 29.9
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 1.3e-09 68.9 253 28.9
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 1.7e-09 68.6 228 31.6
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 1.7e-09 68.6 291 30.2
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 1.7e-09 68.6 354 29.4
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 6.3e-09 66.6 243 29.2
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 1.1e-08 65.9 247 29.6
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 1.4e-08 65.5 75 48.0
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 2.4e-08 64.7 95 45.3
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 4.1e-08 63.9 56 57.1
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 1.6e-07 62.0 84 41.7
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 1.6e-07 62.0 84 42.9
A10p22240 Brassica napus HOM05D004299 ORTHO05D003557 2.0e-07 61.6 79 53.2
BraA10t44283Z Brassica rapa HOM05D004299 ORTHO05D003557 2.0e-07 61.6 79 53.2
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 2.7e-07 61.2 43 62.8
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 5.9e-07 60.1 33 78.8
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 5.9e-07 60.1 39 69.2
SGA_v2.0_scaffold50G18437 Striga asiatica HOM05D024109 ORTHO05D003557 1.3e-06 58.9 34 73.5
ATR0149G001 Amborella trichopoda HOM05D033261 ORTHO05D003557 3.8e-06 57.4 97 40.2
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 3.8e-06 57.4 118 33.9
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 5.0e-06 57.0 547 29.8
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 8.6e-06 56.2 38 63.2
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 8.6e-06 56.2 38 63.2


User provided reference genes

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