Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G03100 Arabidopsis thaliana HOM05D006359 ORTHO05D007871 4.8e-93 344.4 160 100.0
AL3G12700 Arabidopsis lyrata HOM05D006359 ORTHO05D007871 5.3e-92 340.9 160 98.8
Thhalv10021682m.g Eutrema salsugineum HOM05D006359 ORTHO05D007871 2.2e-90 335.5 160 96.2
CARHR077120 Cardamine hirsuta HOM05D006359 ORTHO05D007871 3.8e-90 334.7 160 95.6
BolC1t05848H Brassica oleracea HOM05D006359 ORTHO05D007871 1.5e-89 332.8 160 95.0
BraA01t04593Z Brassica rapa HOM05D006359 ORTHO05D007871 1.5e-89 332.8 160 95.0
Sp3g02140 Schrenkiella parvula HOM05D006359 ORTHO05D007871 5.5e-89 330.9 160 94.4
Carub.0003s0225 Capsella rubella HOM05D006359 ORTHO05D007871 1.6e-88 329.3 160 95.0
C05p63700 Brassica napus HOM05D006359 ORTHO05D007871 2.7e-88 328.6 160 93.8
BolC5t35039H Brassica oleracea HOM05D006359 ORTHO05D007871 2.7e-88 328.6 160 93.8
BraSC90t46703Z Brassica rapa HOM05D006359 ORTHO05D007871 2.7e-88 328.6 160 93.8
A05p44080 Brassica napus HOM05D006359 ORTHO05D007871 6.1e-88 327.4 160 93.1
Aa31LG5G13580 Aethionema arabicum HOM05D006359 ORTHO05D007871 6.8e-87 323.9 160 91.2
THA.LOC104820881 Tarenaya hassleriana HOM05D006359 ORTHO05D007871 4.7e-80 301.2 158 84.8
Atru.chr12.1978 Acer truncatum HOM05D006359 ORTHO05D007871 2.0e-78 295.8 160 81.9
THA.LOC104827217 Tarenaya hassleriana HOM05D006359 ORTHO05D007871 2.0e-78 295.8 160 81.9
PGSC0003DMG402000567 Solanum tuberosum HOM05D006359 ORTHO05D007871 4.9e-77 291.2 157 80.3
CSS0011317 Camellia sinensis var. sinensis HOM05D006359 ORTHO05D007871 8.3e-77 290.4 154 82.5
Lsat_1_v5_gn_3_105561 Lactuca sativa HOM05D006359 ORTHO05D007871 8.3e-77 290.4 157 83.4
CAN.G303.77 Capsicum annuum HOM05D006359 ORTHO05D007871 1.1e-76 290.0 157 80.3
HanXRQChr12g0381881 Helianthus annuus HOM05D006359 ORTHO05D007871 1.4e-76 289.7 156 84.0
Sopen03g027690 Solanum pennellii HOM05D006359 ORTHO05D007871 4.1e-76 288.1 154 79.9
ECA246G3947 Erigeron canadensis HOM05D006359 ORTHO05D007871 7.0e-76 287.3 160 80.6
Glyma.01G228400 Glycine max HOM05D006359 ORTHO05D007871 3.5e-75 285.0 150 81.3
GSVIVG01024414001 Vitis vinifera HOM05D006359 ORTHO05D007871 3.5e-75 285.0 153 83.0
Manes.08G162700 Manihot esculenta HOM05D006359 ORTHO05D007871 4.5e-75 284.6 160 80.6
Cpa.g.sc39.69 Carica papaya HOM05D006359 ORTHO05D007871 5.9e-75 284.3 160 78.1
Glyma.11G011200 Glycine max HOM05D006359 ORTHO05D007871 5.9e-75 284.3 150 81.3
SGA_v2.0_scaffold18G08507 Striga asiatica HOM05D006359 ORTHO05D007871 1.0e-74 283.5 153 82.4
Cc02_g00330 Coffea canephora HOM05D006359 ORTHO05D007871 1.3e-74 283.1 154 80.5
Gohir.D09G101400 Gossypium hirsutum HOM05D006359 ORTHO05D007871 2.9e-74 282.0 160 78.1
Gorai.006G118800 Gossypium raimondii HOM05D006359 ORTHO05D007871 2.9e-74 282.0 160 78.1
Phvul.002G039500 Phaseolus vulgaris HOM05D006359 ORTHO05D007871 3.8e-74 281.6 150 81.3
Gohir.A09G104700 Gossypium hirsutum HOM05D006359 ORTHO05D007871 5.0e-74 281.2 160 78.1
TWI74G0194 Tripterygium wilfordii HOM05D006359 ORTHO05D007871 5.0e-74 281.2 160 78.8
ATR0829G118 Amborella trichopoda HOM05D006359 ORTHO05D007871 6.6e-74 280.8 154 79.2
COL.COLO4_25307 Corchorus olitorius HOM05D006359 ORTHO05D007871 8.6e-74 280.4 160 79.4
TAR375G0743 Trochodendron aralioides HOM05D006359 ORTHO05D007871 8.6e-74 280.4 155 78.7
Migut.F00100 Erythranthe guttata HOM05D006359 ORTHO05D007871 1.1e-73 280.0 153 80.4
Aqoxy3G02089 Aquilegia oxysepala HOM05D006359 ORTHO05D007871 1.5e-73 279.6 157 77.7
arahy.Tifrunner.gnm1.ann1.N39QDT Arachis hypogaea HOM05D006359 ORTHO05D007871 1.5e-73 279.6 153 79.7
CiPaw.06G019000 Carya illinoinensis HOM05D006359 ORTHO05D007871 1.5e-73 279.6 158 77.8
Actinidia18703 Actinidia chinensis HOM05D006359 ORTHO05D007871 1.9e-73 279.3 152 78.9
Duzib168G1989 Durio zibethinus HOM05D006359 ORTHO05D007871 1.9e-73 279.3 160 78.1
SalBow4G0660 Salvia bowleyana HOM05D006359 ORTHO05D007871 2.5e-73 278.9 153 79.7
SalBow4G2166 Salvia bowleyana HOM05D006359 ORTHO05D007871 2.5e-73 278.9 153 79.7
Thecc.09G264700 Theobroma cacao HOM05D006359 ORTHO05D007871 2.5e-73 278.9 160 78.1
Potri.019G051400 Populus trichocarpa HOM05D006359 ORTHO05D007871 3.3e-73 278.5 160 79.4
SGA_v2.0_scaffold44G16885 Striga asiatica HOM05D006359 ORTHO05D007871 3.3e-73 278.5 154 79.9
arahy.Tifrunner.gnm1.ann1.K5IGPH Arachis hypogaea HOM05D006359 ORTHO05D007871 7.3e-73 277.3 153 78.4
TPR.G17376 Trifolium pratense HOM05D006359 ORTHO05D007871 7.3e-73 277.3 153 78.4
TPR.G779 Trifolium pratense HOM05D006359 ORTHO05D007871 7.3e-73 277.3 153 78.4
Cfa015873 Carpinus fangiana HOM05D006359 ORTHO05D007871 9.5e-73 276.9 157 79.0
Medtr8g009960 Medicago truncatula HOM05D006359 ORTHO05D007871 9.5e-73 276.9 156 77.6
Eucgr.K00090 Eucalyptus grandis HOM05D006359 ORTHO05D007871 1.6e-72 276.2 154 76.6
CANSAT56G0993 Cannabis sativa HOM05D006359 ORTHO05D007871 6.1e-72 274.2 154 78.6
Ca_23151_v3 Cicer arietinum L. HOM05D006359 ORTHO05D007871 1.8e-71 272.7 153 77.8
unitig_0.g2431 Utricularia gibba HOM05D001194 ORTHO05D007871 1.8e-71 272.7 154 76.6
CsaV3_5G005640 Cucumis sativus L. HOM05D006359 ORTHO05D007871 4.0e-71 271.6 156 76.3
Dinv29162 Davidia involucrata HOM05D006359 ORTHO05D007871 6.8e-71 270.8 146 81.5
Sed0025211 Sechium edule HOM05D006359 ORTHO05D007871 6.8e-71 270.8 156 75.6
Sabra19G0057200 Salix brachista HOM05D006359 ORTHO05D007871 8.9e-71 270.4 160 75.6
Sed0002409 Sechium edule HOM05D006359 ORTHO05D007871 1.2e-70 270.0 155 76.1
Lalb_Chr05g0211271 Lupinus albus HOM05D006359 ORTHO05D007871 1.5e-70 269.6 150 79.3
Peaxi162Scf00745g00854 Petunia axillaris HOM05D006359 ORTHO05D007871 1.5e-70 269.6 154 78.6
FvH4_7g33890 Fragaria vesca HOM05D006359 ORTHO05D007871 2.0e-70 269.2 154 77.3
MELO3C005389.2 Cucumis melo HOM05D006359 ORTHO05D007871 2.6e-70 268.9 156 75.0
Duzib150G0394 Durio zibethinus HOM05D006359 ORTHO05D007871 2.6e-70 268.9 160 75.0
Lj3g0004693 Lotus japonicus HOM05D006359 ORTHO05D007871 4.4e-70 268.1 150 77.3
arahy.Tifrunner.gnm1.ann1.0WZ6H1 Arachis hypogaea HOM05D006359 ORTHO05D007871 7.5e-70 267.3 165 72.7
RcHm_v2.0_Chr1g0384091 Rosa chinensis HOM05D006359 ORTHO05D007871 7.5e-70 267.3 154 77.9
AUR62028171 Chenopodium quinoa HOM05D006359 ORTHO05D007871 9.8e-70 266.9 155 73.5
EL10Ac3g05084 Beta vulgaris HOM05D006359 ORTHO05D007871 1.7e-69 266.2 155 74.2
Nitab4.5_0011930g0020 Nicotiana tabacum HOM05D006359 ORTHO05D007871 3.7e-69 265.0 157 75.8
PSO063G2711 Papaver somniferum HOM05D006359 ORTHO05D007871 3.7e-69 265.0 155 74.8
Prupe.2G325400 Prunus persica HOM05D006359 ORTHO05D007871 1.1e-68 263.5 154 75.3
MD07G1308200 Malus domestica HOM05D006359 ORTHO05D007871 1.4e-68 263.1 157 73.2
MD01G1235400 Malus domestica HOM05D006359 ORTHO05D007871 1.9e-68 262.7 157 73.2
PSO782G4768 Papaver somniferum HOM05D006359 ORTHO05D007871 1.9e-68 262.7 155 74.8
PGR042G0220 Punica granatum HOM05D006359 ORTHO05D007871 2.4e-68 262.3 155 74.2
FAN03G1870 Fragaria x ananassa HOM05D006359 ORTHO05D007871 4.1e-68 261.5 154 75.3
Rhsim09G0212500 Rhododendron simsii HOM05D006359 ORTHO05D007871 4.1e-68 261.5 152 77.6
Sc13g0010840 Simmondsia chinensis HOM05D006359 ORTHO05D007871 7.0e-68 260.8 129 88.4
Ciclev10022653m.g Citrus clementina HOM05D006359 ORTHO05D007871 2.0e-67 259.2 154 75.3
VMungo1215G3178 Vigna mungo HOM05D006359 ORTHO05D007871 1.3e-66 256.5 139 82.0
Zm00001eb025210 Zea mays HOM05D006359 ORTHO05D007871 6.6e-66 254.2 155 72.9
BNapus_Darmor_BZH_scaffold_129p00020 Brassica napus HOM05D006359 ORTHO05D007871 1.1e-65 253.4 122 95.1
Os10g0579300 Oryza sativa ssp. japonica HOM05D006359 ORTHO05D007871 1.9e-65 252.7 155 72.9
Nitab4.5_0000021g0410 Nicotiana tabacum HOM05D006359 ORTHO05D007871 2.5e-65 252.3 128 85.9
vmacro10188 Vaccinium macrocarpon HOM05D006359 ORTHO05D007871 5.6e-65 251.1 126 87.3
QL09p024508 Quercus lobata HOM05D006359 ORTHO05D007871 1.2e-64 250.0 157 72.0
Lj3A888T26 Lonicera japonica HOM05D006359 ORTHO05D007871 1.8e-63 246.1 120 90.8
TPR.G4015 Trifolium pratense HOM05D006359 ORTHO05D007871 4.0e-63 245.0 153 70.6
FAN03G2552 Fragaria x ananassa HOM05D006359 ORTHO05D007871 5.2e-63 244.6 161 72.0
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 2.6e-62 242.3 148 71.6
Zm00001eb224990 Zea mays HOM05D006359 ORTHO05D007871 9.8e-62 240.4 144 73.6
BcaB04g21383 Brassica carinata HOM05D006359 ORTHO05D007871 2.2e-61 239.2 117 94.9
Hund09785 Selenicereus undatus HOM05D006359 ORTHO05D007871 6.4e-61 237.7 152 70.4
AUR62002057 Chenopodium quinoa HOM05D006359 ORTHO05D007871 8.3e-61 237.3 155 67.1
FAN01G1102 Fragaria x ananassa HOM05D006359 ORTHO05D007871 1.4e-60 236.5 161 69.6
arahy.Tifrunner.gnm1.ann1.PN0BWC Arachis hypogaea HOM05D006359 ORTHO05D007871 1.1e-57 226.9 124 79.8
Haze_00616 Corylus avellana HOM05D006359 ORTHO05D007871 2.3e-55 219.2 157 67.5
Gorai.009G080000 Gossypium raimondii HOM05D006359 ORTHO05D007871 3.7e-53 211.8 160 63.8
CDE11G0363 Ceratophyllum demersum HOM05D006359 ORTHO05D007871 1.4e-52 209.9 119 76.5
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 2.4e-52 209.1 121 74.4
FAN02G0767 Fragaria x ananassa HOM05D006359 ORTHO05D007871 1.7e-50 203.0 121 76.0
Mapoly0001s0046 Marchantia polymorpha HOM05D006359 ORTHO05D007871 3.3e-49 198.7 157 56.1
ClCG01G005390 Citrullus lanatus HOM05D006359 ORTHO05D007871 9.5e-49 197.2 119 75.6
Psat4g215600 Pisum sativum HOM05D006359 ORTHO05D007871 8.9e-47 190.7 104 78.8
FAN05G5659 Fragaria x ananassa HOM05D006359 ORTHO05D007871 4.4e-46 188.3 109 78.9
AagrBONN_evm.TU.Sc2ySwM_344.5152 Anthoceros agrestis HOM05D006359 ORTHO05D007871 1.7e-45 186.4 148 53.4
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 1.7e-45 186.4 95 84.2
Pp3c16_5910 Physcomitrium patens HOM05D006359 ORTHO05D007871 1.4e-44 183.3 156 53.2
Gohir.A05G075800 Gossypium hirsutum HOM05D006359 ORTHO05D007871 4.6e-43 178.3 160 56.2
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 1.1e-41 173.7 87 85.1
Nn1g01943 Nelumbo nucifera HOM05D006359 ORTHO05D007871 1.9e-41 172.9 109 70.6
Hma1.2p1_0758F.1_g213680 Hydrangea macrophylla HOM05D006359 ORTHO05D007871 1.6e-40 169.9 93 81.7
CBR_g23185 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-39 167.2 146 50.7
SMO331G0004 Selaginella moellendorffii HOM05D006359 ORTHO05D007871 3.8e-37 158.7 104 63.5
FAN10G1928 Fragaria x ananassa HOM05D006359 ORTHO05D007871 3.5e-35 152.1 83 81.9
Hma1.2p1_0758F.1_g213690 Hydrangea macrophylla HOM05D006359 ORTHO05D007871 1.7e-34 149.8 82 82.9
Actinidia33791 Actinidia chinensis HOM05D006359 ORTHO05D007871 5.6e-25 118.2 69 75.4
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.4e-20 103.6 58 75.9
Cre11.g467767 Chlamydomonas reinhardtii HOM05D006359 ORTHO05D007871 4.3e-17 92.0 152 34.9
MCO08G302 Micromonas commoda HOM05D006359 ORTHO05D007871 1.6e-16 90.1 107 44.9
vmacro23522 Vaccinium macrocarpon HOM05D006359 ORTHO05D007871 4.8e-16 88.6 45 80.0
Haze_26508 Corylus avellana HOM05D006359 ORTHO05D007871 3.0e-10 69.3 112 41.1
PRCOL_00004481 Prasinoderma coloniale HOM05D006359 ORTHO05D007871 5.3e-07 58.5 124 30.6
VMungo1383G0392 Vigna mungo HOM05D006359 ORTHO05D007871 1.2e-06 57.4 28 89.3


User provided reference genes

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