Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 1.8e-290 1001.9 530 100.0
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 3.7e-283 977.6 535 96.6
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 1.1e-282 976.1 535 96.8
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 2.9e-275 951.4 538 93.9
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 6.4e-275 950.3 538 92.2
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 7.3e-271 936.8 536 92.7
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 9.5e-271 936.4 535 93.3
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 5.8e-268 927.2 545 90.8
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 5.8e-268 927.2 552 90.0
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 3.7e-267 924.5 561 88.9
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 1.2e-252 876.3 539 84.8
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 6.5e-227 790.8 533 76.9
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 6.5e-227 790.8 502 80.3
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 1.1e-226 790.0 530 77.4
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 1.4e-226 789.6 539 75.9
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 2.5e-226 788.9 501 79.8
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 3.2e-226 788.5 530 77.5
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 4.2e-226 788.1 531 77.0
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 7.2e-226 787.3 542 75.5
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 7.2e-226 787.3 530 76.8
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 9.3e-226 786.9 519 77.6
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 1.6e-225 786.2 530 76.6
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 1.0e-224 783.5 525 76.8
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 2.3e-224 782.3 505 80.2
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 2.3e-224 782.3 501 79.4
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 2.3e-224 782.3 530 76.0
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 3.0e-224 781.9 546 74.9
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 3.0e-224 781.9 530 76.6
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 3.9e-224 781.6 505 79.6
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 6.7e-224 780.8 507 78.9
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 3.3e-223 778.5 506 78.3
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 4.3e-223 778.1 527 75.7
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 4.3e-223 778.1 534 76.0
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 5.7e-223 777.7 509 77.8
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 9.7e-223 776.9 501 78.2
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 1.3e-222 776.5 534 76.4
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 1.1e-221 773.5 527 76.3
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 1.8e-221 772.7 508 77.6
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 2.4e-221 772.3 508 77.0
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 5.3e-221 771.2 533 75.2
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 1.5e-220 769.6 501 77.6
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 2.0e-220 769.2 534 74.9
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 2.6e-220 768.8 495 77.2
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 4.5e-220 768.1 501 78.0
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 4.5e-220 768.1 534 75.3
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 5.9e-220 767.7 502 76.9
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 1.3e-219 766.5 503 77.7
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.7e-219 766.1 533 75.6
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 1.7e-219 766.1 502 76.7
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 2.2e-219 765.8 538 75.1
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 2.9e-219 765.4 516 75.8
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 8.5e-219 763.8 502 76.5
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 7.2e-218 760.8 499 77.0
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 6.1e-217 757.7 543 73.7
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 2.3e-216 755.7 501 76.0
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 6.7e-216 754.2 541 73.2
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 3.3e-215 751.9 528 73.5
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 9.7e-215 750.4 504 74.0
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 1.3e-214 750.0 525 74.7
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 2.2e-214 749.2 532 73.1
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 4.8e-214 748.0 542 72.0
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 5.9e-212 741.1 500 75.0
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 6.5e-211 737.6 501 76.6
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 2.5e-210 735.7 525 72.8
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.0e-208 730.3 528 72.2
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 1.8e-208 729.6 537 70.0
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 3.9e-208 728.4 507 75.7
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 8.8e-208 727.2 528 71.8
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 1.1e-207 726.9 501 73.3
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 4.4e-207 724.9 502 74.3
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 9.7e-207 723.8 597 65.2
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 2.2e-206 722.6 528 71.2
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 1.4e-205 719.9 501 74.9
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 1.6e-204 716.5 527 71.5
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 2.6e-204 715.7 501 74.9
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 1.0e-203 713.8 532 70.1
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 8.5e-203 710.7 534 71.7
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 8.5e-203 710.7 610 63.8
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 3.2e-202 708.8 506 73.3
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 1.5e-199 699.9 532 70.3
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 4.8e-198 694.9 530 69.2
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 8.2e-198 694.1 464 76.5
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 1.0e-192 677.2 511 68.3
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 3.5e-188 662.1 510 65.9
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 1.7e-187 659.8 593 62.2
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 1.5e-186 656.8 527 67.6
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 1.6e-185 653.3 500 68.4
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 2.1e-185 652.9 580 61.2
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 1.4e-184 650.2 495 68.1
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 1.5e-183 646.7 523 64.8
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 5.7e-183 644.8 473 71.0
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 1.6e-180 636.7 360 92.8
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 1.6e-177 626.7 420 76.9
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 1.8e-176 623.2 501 63.9
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 1.8e-176 623.2 501 63.9
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 8.3e-174 614.4 460 71.3
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 5.2e-168 595.1 481 64.2
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 1.1e-162 577.4 470 67.2
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 5.6e-162 575.1 371 77.9
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 1.8e-160 570.1 520 57.1
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 4.9e-158 562.0 486 59.3
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 4.0e-152 542.3 366 79.2
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 2.9e-150 536.2 381 73.8
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 5.8e-143 511.9 335 76.7
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 3.2e-125 453.0 319 73.7
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 1.3e-118 431.0 240 94.2
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 3.8e-110 402.9 522 44.4
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 5.5e-109 399.1 249 78.7
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 9.3e-109 398.3 303 67.7
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 1.3e-105 387.9 452 53.3
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 1.1e-98 364.8 509 42.8
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 6.3e-89 332.4 484 41.1
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 4.4e-74 283.1 308 54.5
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 1.7e-62 244.6 173 70.5
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 3.6e-52 210.3 494 34.0
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.2e-47 195.3 519 32.6
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 3.5e-47 193.7 478 33.7
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 1.7e-46 191.4 199 54.3
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 4.9e-41 173.3 118 73.7
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 9.5e-37 159.1 282 40.8
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 2.1e-36 157.9 456 31.8
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 2.4e-35 154.5 129 63.6
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 8.9e-35 152.5 477 32.1
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 6.4e-33 146.4 455 31.2
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 4.7e-28 130.2 294 35.7
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 1.4e-27 128.6 277 36.5
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 1.8e-27 128.3 277 36.8
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 4.0e-27 127.1 336 34.2
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 3.2e-24 117.5 221 38.9
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 7.8e-23 112.8 86 60.5
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 1.5e-21 108.6 74 68.9
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 2.5e-21 107.8 196 39.8
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 2.8e-20 104.4 323 28.2
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 4.8e-20 103.6 360 29.4
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 1.1e-19 102.4 207 38.2
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 2.4e-19 101.3 239 31.0
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 4.0e-19 100.5 354 29.7
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 2.0e-18 98.2 398 29.4
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 2.6e-18 97.8 142 42.3
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 4.5e-18 97.1 63 69.8
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 1.3e-17 95.5 200 38.5
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 1.3e-17 95.5 399 29.1
PSO541G6299 Papaver somniferum HOM05D004787 ORTHO05D302708 3.8e-17 94.0 304 28.0
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 8.4e-17 92.8 142 40.8
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 1.6e-15 88.6 312 29.2
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 1.3e-14 85.5 294 30.6
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 4.0e-11 73.9 141 36.9
RcHm_v2.0_Chr5g0002281 Rosa chinensis HOM05D003404 ORTHO05D029456 3.0e-06 57.8 32 81.2


User provided reference genes

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