Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G02690 Arabidopsis thaliana HOM05D006104 ORTHO05D008303 2.2e-214 748.8 418 100.0
AL3G12080 Arabidopsis lyrata HOM05D006104 ORTHO05D008303 9.7e-202 706.8 426 91.1
Carub.0003s0179 Capsella rubella HOM05D006104 ORTHO05D008303 5.2e-195 684.5 426 87.1
Sp3g01720 Schrenkiella parvula HOM05D006104 ORTHO05D008303 1.2e-191 673.3 428 84.1
BNapus_Darmor_BZH_scaffold_122p00170 Brassica napus HOM05D006104 ORTHO05D008303 2.6e-191 672.2 425 84.5
CARHR076690 Cardamine hirsuta HOM05D006104 ORTHO05D008303 3.5e-191 671.8 425 84.0
BolC1t05884H Brassica oleracea HOM05D006104 ORTHO05D008303 1.7e-190 669.5 425 83.8
BraA01t04624Z Brassica rapa HOM05D006104 ORTHO05D008303 2.2e-190 669.1 426 83.8
Thhalv10020801m.g Eutrema salsugineum HOM05D006104 ORTHO05D008303 3.2e-189 665.2 427 82.7
Aa31LG5G13170 Aethionema arabicum HOM05D006104 ORTHO05D008303 4.4e-170 601.7 429 76.7
THA.LOC104820927 Tarenaya hassleriana HOM05D006104 ORTHO05D008303 2.3e-142 509.6 365 73.7
BNapus_Darmor_BZH_scaffold_99p00200 Brassica napus HOM05D006104 ORTHO05D008303 3.1e-139 499.2 267 96.3
Gohir.D12G051700 Gossypium hirsutum HOM05D006104 ORTHO05D008303 1.7e-137 493.4 325 77.2
Gorai.008G055000 Gossypium raimondii HOM05D006104 ORTHO05D008303 1.7e-137 493.4 325 77.2
Duzib138G0961 Durio zibethinus HOM05D006104 ORTHO05D008303 3.8e-137 492.3 325 77.5
Potri.012G145300 Populus trichocarpa HOM05D006104 ORTHO05D008303 1.1e-136 490.7 339 74.3
Cpa.g.sc108.21 Carica papaya HOM05D006104 ORTHO05D008303 7.1e-136 488.0 332 74.4
Thecc.04G056600 Theobroma cacao HOM05D006104 ORTHO05D008303 4.6e-135 485.3 325 76.0
PGSC0003DMG400021455 Solanum tuberosum HOM05D006104 ORTHO05D008303 1.1e-133 480.7 332 72.9
ClCG01G008400 Citrullus lanatus HOM05D006104 ORTHO05D008303 1.5e-133 480.3 340 73.2
Haze_14041 Corylus avellana HOM05D006104 ORTHO05D008303 4.7e-132 475.3 424 62.0
Rhsim10G0186700 Rhododendron simsii HOM05D006104 ORTHO05D008303 4.7e-132 475.3 328 72.6
Peaxi162Scf00784g00028 Petunia axillaris HOM05D006104 ORTHO05D008303 6.2e-132 474.9 334 73.4
AUR62037537 Chenopodium quinoa HOM05D006104 ORTHO05D008303 8.1e-132 474.6 325 73.5
Solyc02g036470.4 Solanum lycopersicum HOM05D006104 ORTHO05D008303 8.1e-132 474.6 416 60.6
Dinv19095 Davidia involucrata HOM05D006104 ORTHO05D008303 1.1e-131 474.2 299 77.6
FvH4_5g39720 Fragaria vesca HOM05D006104 ORTHO05D008303 1.1e-131 474.2 324 73.8
FAN18G3652 Fragaria x ananassa HOM05D006104 ORTHO05D008303 1.1e-131 474.2 324 73.8
arahy.Tifrunner.gnm1.ann1.W9ZMNH Arachis hypogaea HOM05D006104 ORTHO05D008303 1.8e-131 473.4 340 71.8
Sopen02g011830 Solanum pennellii HOM05D006104 ORTHO05D008303 2.4e-131 473.0 416 60.6
TAR371G0041 Trochodendron aralioides HOM05D006104 ORTHO05D008303 5.2e-131 471.9 295 78.3
RcHm_v2.0_Chr7g0242021 Rosa chinensis HOM05D006104 ORTHO05D008303 6.9e-131 471.5 324 73.5
AUR62035547 Chenopodium quinoa HOM05D006104 ORTHO05D008303 8.9e-131 471.1 330 72.4
Cfa008019 Carpinus fangiana HOM05D006104 ORTHO05D008303 1.2e-130 470.7 425 61.4
arahy.Tifrunner.gnm1.ann1.B0P6V2 Arachis hypogaea HOM05D006104 ORTHO05D008303 1.5e-130 470.3 339 71.7
TWI74G1645 Tripterygium wilfordii HOM05D006104 ORTHO05D008303 2.0e-130 469.9 289 80.3
PSO063G5766 Papaver somniferum HOM05D006104 ORTHO05D008303 2.6e-130 469.5 349 68.8
CANSAT78G2105 Cannabis sativa HOM05D006104 ORTHO05D008303 3.4e-130 469.2 329 71.7
Ciclev10011871m.g Citrus clementina HOM05D006104 ORTHO05D008303 3.4e-130 469.2 417 64.5
CiPaw.03G009900 Carya illinoinensis HOM05D006104 ORTHO05D008303 4.4e-130 468.8 422 60.4
DCAR_003391 Daucus carota HOM05D006104 ORTHO05D008303 7.6e-130 468.0 289 78.5
Atru.chr1.2189 Acer truncatum HOM05D006104 ORTHO05D008303 1.3e-129 467.2 291 80.1
SGA_v2.0_scaffold199G41251 Striga asiatica HOM05D006104 ORTHO05D008303 1.3e-129 467.2 332 71.1
EL10Ac1g01448 Beta vulgaris HOM05D006104 ORTHO05D008303 1.7e-129 466.8 328 71.3
MD09G1187600 Malus domestica HOM05D006104 ORTHO05D008303 2.2e-129 466.5 326 73.0
Nitab4.5_0008083g0020 Nicotiana tabacum HOM05D006104 ORTHO05D008303 4.9e-129 465.3 333 72.1
Oeu058858.1 Olea europaea HOM05D006104 ORTHO05D008303 6.4e-129 464.9 299 74.9
Hund22221 Selenicereus undatus HOM05D006104 ORTHO05D008303 6.4e-129 464.9 306 76.1
Nitab4.5_0002297g0090 Nicotiana tabacum HOM05D006104 ORTHO05D008303 8.4e-129 464.5 336 71.1
PGR042G1876 Punica granatum HOM05D006104 ORTHO05D008303 8.4e-129 464.5 338 69.8
Ah.06g191390 Amaranthus hybridus HOM05D006104 ORTHO05D008303 1.1e-128 464.2 327 72.2
Eucgr.J01650 Eucalyptus grandis HOM05D006104 ORTHO05D008303 1.4e-128 463.8 293 77.5
MSTRG.15618 Avicennia marina HOM05D006104 ORTHO05D008303 3.2e-128 462.6 341 69.5
Lsat_1_v5_gn_8_114940 Lactuca sativa HOM05D006104 ORTHO05D008303 4.2e-128 462.2 326 68.4
Lj6g0001971 Lotus japonicus HOM05D006104 ORTHO05D008303 4.2e-128 462.2 338 70.7
QL02p055508 Quercus lobata HOM05D006104 ORTHO05D008303 5.4e-128 461.8 425 60.0
Glyma.11G202900 Glycine max HOM05D006104 ORTHO05D008303 4.6e-127 458.8 330 71.8
Glyma.18G047900 Glycine max HOM05D006104 ORTHO05D008303 4.6e-127 458.8 334 71.6
Sabra12G0109100 Salix brachista HOM05D006104 ORTHO05D008303 4.6e-127 458.8 353 68.0
HanXRQChr15g0486461 Helianthus annuus HOM05D006104 ORTHO05D008303 1.1e-125 454.1 411 59.6
ECA232G1605 Erigeron canadensis HOM05D006104 ORTHO05D008303 1.9e-125 453.4 289 75.4
Gohir.A12G053200 Gossypium hirsutum HOM05D006104 ORTHO05D008303 2.5e-125 453.0 297 77.1
Migut.K01201 Erythranthe guttata HOM05D006104 ORTHO05D008303 3.3e-125 452.6 417 59.7
MBI06_g37978_MAGBIO Magnolia biondii HOM05D006104 ORTHO05D008303 9.6e-125 451.1 343 67.3
Ca_15100_v3 Cicer arietinum L. HOM05D006104 ORTHO05D008303 3.6e-124 449.1 331 70.4
CDE04G1404 Ceratophyllum demersum HOM05D006104 ORTHO05D008303 6.2e-124 448.4 352 64.2
Medtr3g063240 Medicago truncatula HOM05D006104 ORTHO05D008303 8.1e-124 448.0 286 78.0
ATR0124G053 Amborella trichopoda HOM05D006104 ORTHO05D008303 1.5e-122 443.7 339 67.8
Zm00001eb044830 Zea mays HOM05D006104 ORTHO05D008303 2.2e-121 439.9 345 65.5
FAN08G3450 Fragaria x ananassa HOM05D006104 ORTHO05D008303 2.9e-121 439.5 403 59.3
Cc07_g12610 Coffea canephora HOM05D006104 ORTHO05D008303 8.4e-121 438.0 274 78.1
HPP92_022205 Vanilla planifolia HOM05D006104 ORTHO05D008303 1.1e-120 437.6 293 74.1
Medtr3g063250 Medicago truncatula HOM05D006104 ORTHO05D008303 1.4e-120 437.2 328 69.2
Lj4A249G56 Lonicera japonica HOM05D006104 ORTHO05D008303 3.2e-120 436.0 265 80.4
Actinidia32997 Actinidia chinensis HOM05D006104 ORTHO05D008303 9.3e-120 434.5 413 56.9
CAN.G304.9 Capsicum annuum HOM05D006104 ORTHO05D008303 2.1e-119 433.3 329 67.2
Phvul.006G083500 Phaseolus vulgaris HOM05D006104 ORTHO05D008303 6.0e-119 431.8 329 68.1
Lalb_Chr18g0053941 Lupinus albus HOM05D006104 ORTHO05D008303 3.0e-118 429.5 325 68.3
Nn4g25028 Nelumbo nucifera HOM05D006104 ORTHO05D008303 1.5e-117 427.2 343 62.4
GSVIVG01033198001 Vitis vinifera HOM05D006104 ORTHO05D008303 3.3e-117 426.0 280 74.3
Aqoxy3G04351 Aquilegia oxysepala HOM05D006104 ORTHO05D008303 1.6e-116 423.7 296 70.9
VMungo0540G0919 Vigna mungo HOM05D006104 ORTHO05D008303 4.8e-116 422.2 328 66.8
MELO3C025108.2 Cucumis melo HOM05D006104 ORTHO05D008303 2.0e-114 416.8 487 51.1
AagrBONN_evm.TU.Sc2ySwM_368.1984 Anthoceros agrestis HOM05D006104 ORTHO05D008303 5.8e-114 415.2 347 63.4
Sc09g0004650 Simmondsia chinensis HOM05D006104 ORTHO05D008303 2.3e-110 403.3 297 69.4
Pp3c19_6070 Physcomitrium patens HOM05D006104 ORTHO05D008303 1.4e-107 394.0 311 65.0
EL10Ac4g08870 Beta vulgaris HOM05D006104 ORTHO05D008303 2.0e-106 390.2 242 78.1
SMO364G0667 Selaginella moellendorffii HOM05D006104 ORTHO05D008303 6.5e-105 385.2 314 64.3
unitig_748.g7253 Utricularia gibba HOM05D006104 ORTHO05D008303 1.1e-104 384.4 380 56.1
FAN04G1807 Fragaria x ananassa HOM05D006104 ORTHO05D008303 1.2e-103 380.9 423 52.0
Mapoly0068s0059 Marchantia polymorpha HOM05D006104 ORTHO05D008303 3.5e-103 379.4 313 62.3
vmacro20444 Vaccinium macrocarpon HOM05D006104 ORTHO05D008303 2.6e-98 363.2 293 65.2
CBR_g22386 Chara braunii HOM05D006104 ORTHO05D008303 5.0e-97 359.0 333 59.2
MCO16G393 Micromonas commoda HOM05D006104 ORTHO05D008303 5.0e-97 359.0 324 59.9
CSS0044834 Camellia sinensis var. sinensis HOM05D006104 ORTHO05D008303 1.1e-96 357.8 285 64.6
SalBow5G0256 Salvia bowleyana HOM05D006104 ORTHO05D008303 9.3e-96 354.8 336 58.6
Hma1.2p1_0085F.1_g043890 Hydrangea macrophylla HOM05D006104 ORTHO05D008303 3.4e-90 336.3 284 62.0
CsaV3_5G024350 Cucumis sativus L. HOM05D006104 ORTHO05D008303 3.7e-84 316.2 239 69.9
COL.COLO4_13439 Corchorus olitorius HOM05D006104 ORTHO05D008303 1.8e-83 313.9 222 74.8
Manes.01G125800 Manihot esculenta HOM05D006104 ORTHO05D008303 1.5e-82 310.8 229 70.3
PRCOL_00000403 Prasinoderma coloniale HOM05D006104 ORTHO05D008303 1.5e-82 310.8 293 60.1
Pp3c7_24690 Physcomitrium patens HOM05D006104 ORTHO05D008303 4.5e-82 309.3 305 51.5
Sed0008277 Sechium edule HOM05D006104 ORTHO05D008303 7.7e-82 308.5 225 71.6
Prupe.8G267800 Prunus persica HOM05D006104 ORTHO05D008303 2.2e-81 307.0 222 69.8
Cre12.g507950 Chlamydomonas reinhardtii HOM05D006104 ORTHO05D008303 4.4e-77 292.7 335 50.1
TPR.G37386 Trifolium pratense HOM05D006104 ORTHO05D008303 1.9e-72 277.3 197 70.6
SEGI_11411 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 1.4e-70 271.2 248 58.9
QL02p056562 Quercus lobata HOM05D006104 ORTHO05D008303 6.3e-68 262.3 156 80.1
Os10g0493900 Oryza sativa ssp. japonica HOM05D006104 ORTHO05D008303 2.0e-66 257.3 156 76.9
SEGI_16808 Sequoiadendron giganteum HOM05D006104 ORTHO05D008303 8.0e-63 245.4 147 78.9
TPR.G14061 Trifolium pratense HOM05D006104 ORTHO05D008303 3.7e-52 209.9 150 74.7
arahy.Tifrunner.gnm1.ann1.4P08NV Arachis hypogaea HOM05D006104 ORTHO05D008303 6.1e-47 192.6 196 56.6
BraA02t04668Z Brassica rapa HOM05D006104 ORTHO05D008303 2.6e-37 160.6 142 66.2
Psat5g144680 Pisum sativum HOM05D006104 ORTHO05D008303 9.8e-37 158.7 137 62.8
arahy.Tifrunner.gnm1.ann1.2Q0DPQ Arachis hypogaea HOM05D006104 ORTHO05D008303 1.6e-26 124.8 109 57.8
arahy.Tifrunner.gnm1.ann1.LG1UYC Arachis hypogaea HOM05D006104 ORTHO05D008303 5.1e-25 119.8 126 51.6
Psat5g144720 Pisum sativum HOM05D006104 ORTHO05D008303 1.1e-24 118.6 110 54.5
Psat0s2701g0160 Pisum sativum HOM05D006104 ORTHO05D000113 2.0e-21 107.8 127 51.2
arahy.Tifrunner.gnm1.ann1.12AD17 Arachis hypogaea HOM05D000052 ORTHO05D000046 1.0e-17 95.5 61 73.8
Cpa.g.c43318 Carica papaya HOM05D006104 ORTHO05D117575 2.3e-17 94.4 255 29.4
Psat7g173760 Pisum sativum HOM05D006104 ORTHO05D008303 3.1e-14 84.0 85 51.8
Psat5g203840 Pisum sativum HOM05D006104 ORTHO05D324349 6.4e-12 76.3 154 40.3
Psat4g208480 Pisum sativum HOM05D006104 ORTHO05D008303 5.4e-11 73.2 35 94.3
Ca_29260_v3 Cicer arietinum L. HOM05D006104 ORTHO05D149040 9.3e-11 72.4 283 23.7
Psat4g208520 Pisum sativum HOM05D006104 ORTHO05D008303 8.1e-07 59.3 63 50.8
QL06p034720 Quercus lobata HOM05D000028 ORTHO05D000701 2.4e-06 57.8 266 24.8


User provided reference genes

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