Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G02480 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 1.3e-26 122.5 69 100.0
AL3G11800 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 1.1e-25 119.4 69 92.8
Carub.0003s0158 Capsella rubella HOM05D002873 ORTHO05D002978 7.1e-25 116.7 69 91.3
BcaC09g47705 Brassica carinata HOM05D002873 ORTHO05D002978 1.4e-20 102.4 67 80.6
BNapus_Darmor_BZH_scaffold_208p00010 Brassica napus HOM05D002873 ORTHO05D002978 1.4e-20 102.4 67 80.6
BolC1t05901H Brassica oleracea HOM05D002873 ORTHO05D002978 1.4e-20 102.4 67 80.6
BraSC141t45633Z Brassica rapa HOM05D002873 ORTHO05D002978 1.4e-20 102.4 67 80.6
BNapus_Darmor_BZH_scaffold_122p00010 Brassica napus HOM05D002873 ORTHO05D002978 4.0e-20 100.9 67 79.1
BNapus_Darmor_BZH_scaffold_99p00020 Brassica napus HOM05D002873 ORTHO05D002978 4.0e-20 100.9 67 79.1
BolC1t05900H Brassica oleracea HOM05D002873 ORTHO05D002978 4.0e-20 100.9 67 79.1
BcaC01g04444 Brassica carinata HOM05D002873 ORTHO05D002978 7.6e-19 96.7 66 83.3
C03p40070 Brassica napus HOM05D002873 ORTHO05D002978 7.6e-19 96.7 66 83.3
BolC3t16273H Brassica oleracea HOM05D002873 ORTHO05D002978 7.6e-19 96.7 66 83.3
CARHR076460 Cardamine hirsuta HOM05D002873 ORTHO05D002978 3.8e-18 94.4 66 81.8
A03p32950 Brassica napus HOM05D002873 ORTHO05D002978 4.9e-18 94.0 66 78.8
BraA03t12463Z Brassica rapa HOM05D002873 ORTHO05D002978 4.9e-18 94.0 66 78.8
BcaC01g04554 Brassica carinata HOM05D002873 ORTHO05D002978 3.3e-14 81.3 66 72.7
Sp3g01520 Schrenkiella parvula HOM05D002873 ORTHO05D002978 3.6e-13 77.8 66 71.2
Cfa020560 Carpinus fangiana HOM05D002873 ORTHO05D002978 2.4e-12 75.1 66 60.6
Haze_17643 Corylus avellana HOM05D002873 ORTHO05D002978 2.4e-12 75.1 66 60.6
Haze_14075 Corylus avellana HOM05D002873 ORTHO05D002978 3.1e-12 74.7 65 63.1
Prupe.3G244500 Prunus persica HOM05D002873 ORTHO05D002978 3.1e-12 74.7 65 60.0
THA.LOC109117084 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 6.9e-12 73.6 65 60.0
Prupe.3G244400 Prunus persica HOM05D002873 ORTHO05D002978 9.0e-12 73.2 65 58.5
A02p10830 Brassica napus HOM05D002873 ORTHO05D002978 1.2e-11 72.8 65 56.9
BraA02t06145Z Brassica rapa HOM05D002873 ORTHO05D002978 1.2e-11 72.8 65 56.9
Lalb_Chr04g0258251 Lupinus albus HOM05D002873 ORTHO05D002978 1.2e-11 72.8 64 60.9
Prupe.3G244200 Prunus persica HOM05D002873 ORTHO05D002978 1.5e-11 72.4 65 58.5
Prupe.3G244300 Prunus persica HOM05D002873 ORTHO05D002978 1.5e-11 72.4 65 58.5
Prupe.3G244600 Prunus persica HOM05D002873 ORTHO05D002978 1.5e-11 72.4 65 58.5
THA.LOC109116986 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 2.0e-11 72.0 68 60.3
Migut.H00555 Erythranthe guttata HOM05D002873 ORTHO05D002978 2.6e-11 71.6 64 57.8
BcaC03g14385 Brassica carinata HOM05D002873 ORTHO05D002978 3.4e-11 71.2 65 55.4
C02p17950 Brassica napus HOM05D002873 ORTHO05D002978 3.4e-11 71.2 65 55.4
BolC2t07926H Brassica oleracea HOM05D002873 ORTHO05D002978 3.4e-11 71.2 65 55.4
Sopen02g034300 Solanum pennellii HOM05D002873 ORTHO05D002978 4.5e-11 70.9 66 57.6
CsaV3_5G004620 Cucumis sativus L. HOM05D002873 ORTHO05D002978 5.8e-11 70.5 65 61.5
Sed0008680 Sechium edule HOM05D002873 ORTHO05D002978 5.8e-11 70.5 65 60.0
Prupe.3G244100 Prunus persica HOM05D002873 ORTHO05D002978 7.6e-11 70.1 65 56.9
Phvul.004G047300 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 1.3e-10 69.3 66 57.6
Dinv33894 Davidia involucrata HOM05D002873 ORTHO05D002978 1.7e-10 68.9 66 54.5
Nitab4.5_0006224g0060 Nicotiana tabacum HOM05D002873 ORTHO05D002978 2.2e-10 68.6 64 60.9
TWI34G1371 Tripterygium wilfordii HOM05D002873 ORTHO05D002978 2.2e-10 68.6 65 55.4
Dinv38615 Davidia involucrata HOM05D002873 ORTHO05D002978 2.9e-10 68.2 66 57.6
Ca_06717_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 3.8e-10 67.8 63 55.6
RcHm_v2.0_Chr2g0163991 Rosa chinensis HOM05D002873 ORTHO05D002978 3.8e-10 67.8 66 56.1
FAN02G0494 Fragaria x ananassa HOM05D002873 ORTHO05D002978 8.4e-10 66.6 66 57.6
Nitab4.5_0006524g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 8.4e-10 66.6 69 56.5
Aqoxy6G00630 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 3.2e-09 64.7 66 54.5
Eucgr.I02095 Eucalyptus grandis HOM05D002873 ORTHO05D002978 3.2e-09 64.7 65 55.4
C09p61100 Brassica napus HOM05D010783 ORTHO05D013000 4.2e-09 64.3 65 58.5
BolC9t58953H Brassica oleracea HOM05D010783 ORTHO05D013000 4.2e-09 64.3 65 58.5
Sp6g28150 Schrenkiella parvula HOM05D010783 ORTHO05D013000 4.2e-09 64.3 65 58.5
arahy.Tifrunner.gnm1.ann1.4T36CH Arachis hypogaea HOM05D002873 ORTHO05D002978 5.4e-09 63.9 64 51.6
arahy.Tifrunner.gnm1.ann1.JTM1YJ Arachis hypogaea HOM05D002873 ORTHO05D002978 5.4e-09 63.9 64 51.6
Aqoxy6G02621 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 7.1e-09 63.5 66 53.0
Cpa.g.sc188.26 Carica papaya HOM05D002873 ORTHO05D002978 7.1e-09 63.5 65 53.8
Prupe.3G244700 Prunus persica HOM05D002873 ORTHO05D002978 7.1e-09 63.5 64 53.1
Sed0026183 Sechium edule HOM05D002873 ORTHO05D002978 7.1e-09 63.5 65 53.8
THA.LOC109116088 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 7.1e-09 63.5 64 54.7
CARHR288730 Cardamine hirsuta HOM05D002873 ORTHO05D002978 9.3e-09 63.2 59 61.0
GSVIVG01036492001 Vitis vinifera HOM05D002873 ORTHO05D002978 9.3e-09 63.2 66 50.0
A10p23100 Brassica napus HOM05D010783 ORTHO05D013000 1.2e-08 62.8 65 56.9
Dinv36852 Davidia involucrata HOM05D002873 ORTHO05D002978 1.2e-08 62.8 65 53.8
MELO3C022078.2 Cucumis melo HOM05D002873 ORTHO05D002978 2.1e-08 62.0 65 53.8
A02p03320 Brassica napus HOM05D010783 ORTHO05D013000 2.7e-08 61.6 65 55.4
BraA02t05303Z Brassica rapa HOM05D010783 ORTHO05D013000 2.7e-08 61.6 65 55.4
Dinv33895 Davidia involucrata HOM05D002873 ORTHO05D002978 2.7e-08 61.6 66 51.5
Hund13793 Selenicereus undatus HOM05D002873 ORTHO05D002978 2.7e-08 61.6 65 53.8
Actinidia18105 Actinidia chinensis HOM05D002873 ORTHO05D002978 3.5e-08 61.2 66 56.1
BraA10t44378Z Brassica rapa HOM05D010783 ORTHO05D013000 3.5e-08 61.2 65 55.4
Actinidia26314 Actinidia chinensis HOM05D002873 ORTHO05D002978 4.6e-08 60.8 66 53.0
Thhalv10015228m.g Eutrema salsugineum HOM05D010783 ORTHO05D013000 6.0e-08 60.5 65 53.8
Sc11g0008050 Simmondsia chinensis HOM05D002873 ORTHO05D002978 6.0e-08 60.5 66 51.5
Carub.0006s1416 Capsella rubella HOM05D010783 ORTHO05D013000 7.9e-08 60.1 66 50.0
Cc00_g21590 Coffea canephora HOM05D002873 ORTHO05D002978 7.9e-08 60.1 66 56.1
Peaxi162Scf00479g00055 Petunia axillaris HOM05D002873 ORTHO05D002978 7.9e-08 60.1 66 51.5
CARHR197340 Cardamine hirsuta HOM05D010783 ORTHO05D013000 1.0e-07 59.7 65 52.3
CsaV3_5G038880 Cucumis sativus L. HOM05D002873 ORTHO05D002978 1.0e-07 59.7 65 50.8
Sopen02g027770 Solanum pennellii HOM05D002873 ORTHO05D002978 1.8e-07 58.9 66 50.0
AT5G15970 Arabidopsis thaliana HOM05D010783 ORTHO05D013000 2.3e-07 58.5 66 48.5
PGSC0003DMG400001534 Solanum tuberosum HOM05D002873 ORTHO05D002978 2.3e-07 58.5 66 50.0
BcaB08g36874 Brassica carinata HOM05D010783 ORTHO05D013000 3.0e-07 58.2 65 52.3
Medtr7g020780 Medicago truncatula HOM05D002873 ORTHO05D002978 3.0e-07 58.2 66 51.5
C02p08090 Brassica napus HOM05D010783 ORTHO05D013000 3.9e-07 57.8 65 52.3
BolC2t06731H Brassica oleracea HOM05D010783 ORTHO05D013000 3.9e-07 57.8 65 52.3
Solyc02g082990.4 Solanum lycopersicum HOM05D002873 ORTHO05D002978 3.9e-07 57.8 66 51.5
BcaNung02219 Brassica carinata HOM05D010783 ORTHO05D013000 5.1e-07 57.4 65 53.8
FAN05G4367 Fragaria x ananassa HOM05D002873 ORTHO05D002978 6.7e-07 57.0 66 53.0
Peaxi162Scf00479g00423 Petunia axillaris HOM05D002873 ORTHO05D002978 6.7e-07 57.0 66 51.5
Solyc02g065640.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 6.7e-07 57.0 66 56.1
CsaV3_5G004610 Cucumis sativus L. HOM05D002873 ORTHO05D002978 8.7e-07 56.6 65 50.8
Dinv34873 Davidia involucrata HOM05D002873 ORTHO05D002978 8.7e-07 56.6 68 51.5
Sed0018699 Sechium edule HOM05D002873 ORTHO05D002978 8.7e-07 56.6 65 55.4
BcaC03g18462 Brassica carinata HOM05D010783 ORTHO05D013000 1.1e-06 56.2 65 50.8
Carub.0008s1411 Capsella rubella HOM05D002873 ORTHO05D002978 1.5e-06 55.8 64 48.4
Cpa.g.sc188.25 Carica papaya HOM05D002873 ORTHO05D002978 1.5e-06 55.8 65 47.7
Psat3g191840 Pisum sativum HOM05D002873 ORTHO05D002978 1.5e-06 55.8 61 49.2
RcHm_v2.0_Chr2g0164011 Rosa chinensis HOM05D002873 ORTHO05D002978 1.5e-06 55.8 65 52.3
Sed0011149 Sechium edule HOM05D002873 ORTHO05D002978 1.5e-06 55.8 72 45.8
AT5G15960 Arabidopsis thaliana HOM05D010783 ORTHO05D013000 1.9e-06 55.5 66 45.5
Migut.H00561 Erythranthe guttata HOM05D002873 ORTHO05D002978 1.9e-06 55.5 66 50.0
FAN09G3043 Fragaria x ananassa HOM05D002873 ORTHO05D002978 1.9e-06 55.5 66 51.5
Sed0018450 Sechium edule HOM05D002873 ORTHO05D002978 1.9e-06 55.5 65 52.3
Sc11g0008060 Simmondsia chinensis HOM05D002873 ORTHO05D002978 1.9e-06 55.5 66 50.0
BcaC04g18920 Brassica carinata HOM05D010783 ORTHO05D013000 2.5e-06 55.1 65 55.4
HanXRQChr14g0448071 Helianthus annuus HOM05D002873 ORTHO05D002978 2.5e-06 55.1 64 46.9
Lsat_1_v5_gn_2_86260 Lactuca sativa HOM05D002873 ORTHO05D002978 2.5e-06 55.1 66 47.0
MD17G1070100 Malus domestica HOM05D002873 ORTHO05D002978 2.5e-06 55.1 65 52.3
Peaxi162Scf00479g00065 Petunia axillaris HOM05D002873 ORTHO05D002978 2.5e-06 55.1 66 48.5
BraA10t43210Z Brassica rapa HOM05D002873 ORTHO05D002978 3.3e-06 54.7 65 49.2
Thhalv10015216m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 3.3e-06 54.7 64 50.0
Solyc02g089570.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 3.3e-06 54.7 66 51.5
Aa31LG5G10000 Aethionema arabicum HOM05D002873 ORTHO05D002978 4.3e-06 54.3 74 43.2
Medtr7g019290 Medicago truncatula HOM05D002873 ORTHO05D002978 4.3e-06 54.3 68 51.5
Nitab4.5_0015566g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 4.3e-06 54.3 66 56.1
A10p11190 Brassica napus HOM05D002873 ORTHO05D002978 5.6e-06 53.9 65 49.2
Cfa007988 Carpinus fangiana HOM05D002873 ORTHO05D002978 5.6e-06 53.9 89 41.6
Glyma.08G255700 Glycine max HOM05D002873 ORTHO05D002978 5.6e-06 53.9 62 48.4
MELO3C005500.2 Cucumis melo HOM05D002873 ORTHO05D002978 7.4e-06 53.5 65 49.2
Sopen02g015850 Solanum pennellii HOM05D002873 ORTHO05D002978 7.4e-06 53.5 66 50.0
BcaB08g35740 Brassica carinata HOM05D002873 ORTHO05D002978 9.6e-06 53.1 65 50.8


User provided reference genes

Program Settings