Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 2.7e-254 881.7 520 100.0
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 2.4e-194 682.6 669 62.2
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 4.1e-165 585.5 664 55.7
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 3.1e-141 506.1 599 56.8
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 9.8e-127 458.0 531 55.6
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 2.7e-100 370.2 563 52.9
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 1.9e-98 364.0 528 49.4
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 3.5e-92 343.2 572 44.9
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 3.0e-91 340.1 573 45.2
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 6.2e-89 332.4 537 46.2
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 2.6e-87 327.0 520 46.0
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 7.1e-85 318.9 562 43.1
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 4.7e-81 306.2 557 43.4
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 8.1e-81 305.4 563 42.3
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 1.6e-73 281.2 525 41.0
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 2.1e-73 280.8 525 41.0
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 6.2e-73 279.3 526 40.9
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 6.9e-72 275.8 601 44.1
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 1.4e-69 268.1 536 40.9
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 1.4e-69 268.1 536 40.9
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 6.6e-67 259.2 528 39.0
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 1.4e-64 251.5 559 38.8
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 3.4e-63 246.9 581 38.0
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 6.5e-54 216.1 538 34.8
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 2.2e-46 191.0 535 34.4
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 6.7e-43 179.5 376 38.0
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 3.7e-41 173.7 178 56.7
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 2.8e-33 147.5 524 31.7
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 8.2e-33 146.0 525 30.3
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 4.1e-32 143.7 113 67.3
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 6.9e-32 142.9 517 30.4
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 6.5e-30 136.3 519 29.7
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 8.5e-30 136.0 521 28.8
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 1.2e-28 132.1 541 29.0
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 2.1e-28 131.3 538 30.9
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 3.6e-28 130.6 226 41.2
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 4.7e-28 130.2 210 40.0
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 4.7e-28 130.2 180 43.3
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 4.7e-28 130.2 536 29.7
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 1.0e-27 129.0 102 59.8
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 1.4e-27 128.6 158 50.6
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 1.8e-27 128.3 525 29.0
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 2.3e-27 127.9 527 28.3
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 3.0e-27 127.5 537 27.6
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 5.2e-27 126.7 163 47.2
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 6.7e-27 126.3 521 28.0
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 1.1e-26 125.6 145 49.7
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 1.5e-26 125.2 141 51.1
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.5e-26 125.2 561 27.3
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 2.0e-26 124.8 184 42.4
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 2.6e-26 124.4 143 47.6
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 3.3e-26 124.0 556 27.2
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 3.3e-26 124.0 214 39.7
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 4.4e-26 123.6 229 39.3
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 3.7e-25 120.6 102 57.8
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 3.7e-25 120.6 105 54.3
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 6.3e-25 119.8 251 38.2
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.1e-24 119.0 163 44.8
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 1.8e-24 118.2 518 25.7
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 2.4e-24 117.9 215 37.7
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 4.1e-24 117.1 215 39.1
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 5.3e-24 116.7 128 52.3
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 7.0e-24 116.3 519 27.0
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 7.0e-24 116.3 196 38.3
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 1.2e-23 115.5 209 42.1
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 1.2e-23 115.5 534 27.7
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 1.6e-23 115.2 532 29.9
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.6e-23 115.2 536 27.8
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 1.6e-23 115.2 124 51.6
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 2.0e-23 114.8 203 40.9
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 3.5e-23 114.0 196 37.8
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 3.5e-23 114.0 559 26.5
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 1.0e-22 112.5 524 27.5
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 1.3e-22 112.1 198 42.4
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 1.7e-22 111.7 527 30.2
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 2.9e-22 110.9 522 26.6
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 2.9e-22 110.9 209 40.7
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.9e-22 110.9 515 28.2
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.9e-22 110.9 515 28.2
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 5.0e-22 110.2 104 51.9
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 8.5e-22 109.4 518 26.6
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 8.5e-22 109.4 519 26.2
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 3.2e-21 107.5 207 37.7
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 3.2e-21 107.5 210 39.5
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 4.2e-21 107.1 538 29.4
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 4.2e-21 107.1 529 28.4
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 4.2e-21 107.1 505 28.9
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 5.5e-21 106.7 134 47.8
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 9.4e-21 105.9 124 46.8
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 2.7e-20 104.4 527 26.9
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 3.6e-20 104.0 514 26.7
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 4.7e-20 103.6 520 26.2
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 6.1e-20 103.2 525 31.2
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 8.0e-20 102.8 232 34.9
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 1.0e-19 102.4 133 39.8
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 1.0e-19 102.4 537 32.6
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 1.4e-19 102.1 526 28.3
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 8.8e-19 99.4 168 38.7
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 1.2e-18 99.0 167 38.3
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 1.2e-18 99.0 227 33.5
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 1.2e-18 99.0 185 38.9
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 1.2e-18 99.0 227 33.5
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.2e-18 99.0 223 35.4
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 1.5e-18 98.6 520 28.3
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 1.5e-18 98.6 206 36.9
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 2.6e-18 97.8 225 32.4
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 3.3e-18 97.4 228 36.8
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 9.7e-18 95.9 528 26.9
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 1.7e-17 95.1 192 35.4
C06p03000 Brassica napus HOM05D010442 ORTHO05D010690 2.2e-17 94.7 127 46.5
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 3.7e-17 94.0 521 30.9
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 3.7e-17 94.0 521 27.6
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 3.7e-17 94.0 532 25.2
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 6.3e-17 93.2 514 31.9
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 1.1e-16 92.4 529 28.4
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 1.4e-16 92.0 127 43.3
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 1.4e-16 92.0 186 33.9
BolC6t35423H Brassica oleracea HOM05D010442 ORTHO05D010690 1.8e-16 91.7 126 44.4
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 3.1e-16 90.9 534 27.7
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 3.1e-16 90.9 128 37.5
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 4.1e-16 90.5 521 27.1
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 5.3e-16 90.1 521 27.4
BcaC08g43040 Brassica carinata HOM05D010442 ORTHO05D010690 1.6e-15 88.6 124 47.6
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 3.5e-15 87.4 523 31.9
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 1.0e-14 85.9 517 26.5
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 1.0e-14 85.9 532 26.3
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 1.3e-14 85.5 530 26.0
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 2.2e-14 84.7 516 24.0
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 2.2e-14 84.7 161 32.9
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 8.5e-14 82.8 520 30.0
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 1.5e-13 82.0 529 28.0
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.5e-13 82.0 216 31.9
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 4.2e-13 80.5 114 36.8
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 1.8e-11 75.1 513 23.4
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 3.0e-11 74.3 514 23.3
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 6.8e-11 73.2 98 40.8
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 4.4e-10 70.5 509 25.0
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 7.5e-10 69.7 112 35.7
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 4.8e-09 67.0 49 59.2
A06p04460 Brassica napus HOM05D010442 ORTHO05D010690 8.3e-09 66.2 166 37.3
Medtr3g092440 Medicago truncatula HOM05D004833 ORTHO05D005671 2.7e-07 61.2 115 40.0
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 2.7e-07 61.2 97 39.2
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 5.9e-07 60.1 41 63.4
Sed0014933 Sechium edule HOM05D004938 ORTHO05D006035 1.3e-06 58.9 106 35.8
BcaB07g33758 Brassica carinata HOM05D010442 ORTHO05D010690 1.7e-06 58.5 175 33.1
Migut.N00168 Erythranthe guttata HOM05D004938 ORTHO05D006035 3.8e-06 57.4 128 35.2
SalBow5G1669 Salvia bowleyana HOM05D004938 ORTHO05D006035 3.8e-06 57.4 151 31.8
SalBow5G2418 Salvia bowleyana HOM05D004938 ORTHO05D006035 3.8e-06 57.4 151 31.8
Lj6C597G4 Lonicera japonica HOM05D000104 ORTHO05D006391 5.0e-06 57.0 145 31.7
Potri.008G149700 Populus trichocarpa HOM05D004938 ORTHO05D006035 5.0e-06 57.0 145 34.5
Sabra10G0051800 Salix brachista HOM05D004938 ORTHO05D006035 6.5e-06 56.6 145 33.8
TWI73G0197 Tripterygium wilfordii HOM05D004938 ORTHO05D006035 6.5e-06 56.6 145 33.8
ClCG06G005970 Citrullus lanatus HOM05D004938 ORTHO05D006035 8.5e-06 56.2 145 33.8


User provided reference genes

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