Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G02125 Arabidopsis thaliana HOM05D012214 ORTHO05D001736 1.8e-185 652.5 356 100.0
AL3G11360 Arabidopsis lyrata HOM05D012214 ORTHO05D001736 1.5e-123 446.8 315 81.6
Thhalv10022338m.g Eutrema salsugineum HOM05D012214 ORTHO05D001736 1.3e-109 400.6 370 69.2
CARHR076090 Cardamine hirsuta HOM05D012214 ORTHO05D001736 3.7e-109 399.1 375 66.1
Sp3g01190 Schrenkiella parvula HOM05D012214 ORTHO05D001736 7.9e-104 381.3 386 63.2
A05p44960 Brassica napus HOM05D012214 ORTHO05D001736 4.7e-96 355.5 371 62.0
BraSC197t45807Z Brassica rapa HOM05D012214 ORTHO05D001736 4.7e-96 355.5 371 62.0
Carub.0003s0124 Capsella rubella HOM05D012214 ORTHO05D001736 5.2e-95 352.1 380 61.3
BcaC05g30326 Brassica carinata HOM05D012214 ORTHO05D001736 2.8e-93 346.3 369 61.5
BcaC05g30391 Brassica carinata HOM05D012214 ORTHO05D001736 1.1e-84 317.8 373 57.9
C09p75530 Brassica napus HOM05D012214 ORTHO05D001736 1.1e-84 317.8 373 57.9
BolC5t35106H Brassica oleracea HOM05D012214 ORTHO05D001736 7.0e-84 315.1 373 57.6
THA.LOC104821167 Tarenaya hassleriana HOM05D012214 ORTHO05D001736 1.5e-14 84.7 283 35.3
THA.LOC104803131 Tarenaya hassleriana HOM05D012214 ORTHO05D001736 3.4e-14 83.6 132 47.0
TWI60G0888 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 3.2e-12 77.0 185 37.3
Migut.H00622 Erythranthe guttata HOM05D003787 ORTHO05D001736 1.2e-11 75.1 190 33.7
Thhalv10015236m.g Eutrema salsugineum HOM05D034527 ORTHO05D031391 4.6e-11 73.2 125 44.0
Nitab4.5_0003841g0060 Nicotiana tabacum HOM05D003787 ORTHO05D001736 1.1e-09 68.6 42 81.0
Potri.017G094300 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.1e-09 68.6 79 49.4
Lj2g0021607 Lotus japonicus HOM05D003787 ORTHO05D001736 1.5e-09 68.2 228 32.0
Glyma.19G030300 Glycine max HOM05D003787 ORTHO05D001736 2.5e-09 67.4 222 31.1
Atru.chr8.428 Acer truncatum HOM05D003787 ORTHO05D001736 7.4e-09 65.9 275 27.3
Sopen02g033550 Solanum pennellii HOM05D003787 ORTHO05D001736 1.3e-08 65.1 49 69.4
SGA_v2.0_scaffold154G37113 Striga asiatica HOM05D003787 ORTHO05D001736 1.3e-08 65.1 41 75.6
SalBow1G3309 Salvia bowleyana HOM05D003787 ORTHO05D001736 2.8e-08 63.9 93 45.2
SalBow1G5677 Salvia bowleyana HOM05D003787 ORTHO05D001736 2.8e-08 63.9 93 45.2
CARHR263210 Cardamine hirsuta HOM05D011849 ORTHO05D001736 3.7e-08 63.5 178 33.7
VMungo0464G0106 Vigna mungo HOM05D003787 ORTHO05D001736 3.7e-08 63.5 231 31.6
Carub.0007s3672 Capsella rubella HOM05D011849 ORTHO05D001736 4.8e-08 63.2 60 51.7
Cc07_g04250 Coffea canephora HOM05D003787 ORTHO05D001736 6.3e-08 62.8 41 70.7
MELO3C022033.2 Cucumis melo HOM05D003787 ORTHO05D001736 1.1e-07 62.0 123 41.5
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 1.1e-07 62.0 41 70.7
SGA_v2.0_scaffold148G36413 Striga asiatica HOM05D003787 ORTHO05D001736 1.1e-07 62.0 41 70.7
Nitab4.5_0001637g0040 Nicotiana tabacum HOM05D003787 ORTHO05D001736 1.4e-07 61.6 218 29.8
Phvul.004G037400 Phaseolus vulgaris HOM05D003787 ORTHO05D001736 1.4e-07 61.6 213 29.1
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 2.4e-07 60.8 363 30.6
AL7G51260 Arabidopsis lyrata HOM05D011849 ORTHO05D001736 4.1e-07 60.1 185 29.7
Nitab4.5_0007320g0010 Nicotiana tabacum HOM05D003787 ORTHO05D001736 4.1e-07 60.1 288 31.9
Eucgr.I02036 Eucalyptus grandis HOM05D003787 ORTHO05D001736 5.3e-07 59.7 230 30.4
TWI31G1463 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 9.0e-07 58.9 41 70.7
Nitab4.5_0002960g0050 Nicotiana tabacum HOM05D003787 ORTHO05D001736 1.2e-06 58.5 289 28.0
AT5G39200 Arabidopsis thaliana HOM05D011849 ORTHO05D001736 1.5e-06 58.2 184 30.4
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 1.5e-06 58.2 276 30.1
Haze_14428 Corylus avellana HOM05D003787 ORTHO05D001736 1.5e-06 58.2 219 30.1
Sp7g02800 Schrenkiella parvula HOM05D011849 ORTHO05D001736 1.5e-06 58.2 199 29.6
Solyc02g088840.3 Solanum lycopersicum HOM05D003787 ORTHO05D001736 1.5e-06 58.2 297 27.3
Thecc.04G095900 Theobroma cacao HOM05D003787 ORTHO05D001736 1.5e-06 58.2 357 29.1
TWI79G0236 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 1.5e-06 58.2 40 72.5
CAN.G497.103 Capsicum annuum HOM05D003787 ORTHO05D001736 2.6e-06 57.4 372 29.6
ClCG11G004790 Citrullus lanatus HOM05D003787 ORTHO05D001736 2.6e-06 57.4 320 28.1
FvH4_6g46831 Fragaria vesca HOM05D003787 ORTHO05D001736 2.6e-06 57.4 220 30.5
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 2.6e-06 57.4 340 27.1
Sabra17G0083100 Salix brachista HOM05D003787 ORTHO05D001736 2.6e-06 57.4 179 35.2
Thhalv10028226m.g Eutrema salsugineum HOM05D011849 ORTHO05D001736 3.4e-06 57.0 200 31.0
BcaC02g08858 Brassica carinata HOM05D011849 ORTHO05D001736 5.9e-06 56.2 188 31.9
C04p49780 Brassica napus HOM05D011849 ORTHO05D001736 5.9e-06 56.2 188 31.9
BolC4t26569H Brassica oleracea HOM05D011849 ORTHO05D001736 5.9e-06 56.2 188 31.9
CDE04G2454 Ceratophyllum demersum HOM05D003787 ORTHO05D001736 7.6e-06 55.8 44 68.2
Manes.01G096200 Manihot esculenta HOM05D003787 ORTHO05D001736 1.0e-05 55.5 115 37.4
Potri.004G120400 Populus trichocarpa HOM05D003787 ORTHO05D001736 1.0e-05 55.5 143 35.0


User provided reference genes

Program Settings