Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 4.9e-64 247.7 127 100.0
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 3.0e-53 211.8 127 87.4
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 7.1e-47 190.7 127 80.3
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 5.1e-45 184.5 127 78.7
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 2.9e-40 168.7 129 74.4
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 5.3e-34 147.9 110 70.9
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 1.9e-31 139.4 127 62.2
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 5.5e-31 137.9 127 61.4
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 4.6e-30 134.8 127 60.6
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 1.3e-27 126.7 130 59.2
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 8.2e-27 124.0 125 58.4
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 1.1e-26 123.6 125 58.4
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 1.1e-26 123.6 125 58.4
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 3.9e-21 105.1 73 69.9
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 3.9e-21 105.1 73 69.9
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 3.9e-21 105.1 73 69.9
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 8.7e-21 104.0 73 69.9
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 3.3e-20 102.1 69 72.5
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 6.3e-19 97.8 103 53.4
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 8.2e-19 97.4 68 72.1
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 1.1e-18 97.1 71 69.0
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 1.8e-18 96.3 73 64.4
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 4.1e-18 95.1 86 59.3
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 4.1e-18 95.1 68 70.6
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 1.2e-17 93.6 95 55.8
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 1.2e-17 93.6 116 51.7
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 3.4e-17 92.0 111 48.6
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 5.9e-17 91.3 117 49.6
Gohir.D09G008650 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.0e-16 90.5 85 57.6
Gorai.006G010400 Gossypium raimondii HOM05D006882 ORTHO05D008688 5.0e-16 88.2 85 56.5
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 6.5e-16 87.8 66 66.7
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 8.5e-16 87.4 90 52.2
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 1.9e-15 86.3 62 61.3
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 2.5e-15 85.9 106 50.0
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 3.2e-15 85.5 113 47.8
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 9.4e-15 84.0 117 46.2
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 9.4e-15 84.0 76 56.6
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 1.2e-14 83.6 114 47.4
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 1.6e-14 83.2 62 58.1
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 1.6e-14 83.2 122 46.7
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 1.6e-14 83.2 117 43.6
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 2.7e-14 82.4 116 49.1
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 3.6e-14 82.0 99 51.5
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 3.6e-14 82.0 78 57.7
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 3.6e-14 82.0 78 57.7
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 3.6e-14 82.0 78 57.7
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 3.6e-14 82.0 70 55.7
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 4.6e-14 81.6 106 45.3
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 1.0e-13 80.5 99 49.5
Gohir.A09G009600 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.0e-13 80.5 85 55.3
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 1.4e-13 80.1 118 46.6
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 2.3e-13 79.3 106 46.2
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 3.0e-13 79.0 111 45.9
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 3.0e-13 79.0 116 44.8
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 3.0e-13 79.0 108 44.4
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 3.0e-13 79.0 85 50.6
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 3.9e-13 78.6 108 46.3
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 3.9e-13 78.6 91 51.6
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 3.9e-13 78.6 91 51.6
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 5.1e-13 78.2 113 46.0
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 6.7e-13 77.8 118 45.8
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 6.7e-13 77.8 72 55.6
ClCG07G016320 Citrullus lanatus HOM05D006882 ORTHO05D008688 8.8e-13 77.4 66 60.6
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 8.8e-13 77.4 116 48.3
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 8.8e-13 77.4 111 47.7
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 8.8e-13 77.4 76 57.9
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 8.8e-13 77.4 61 67.2
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 8.8e-13 77.4 61 63.9
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 1.5e-12 76.6 111 47.7
CsaV3_4G009150 Cucumis sativus L. HOM05D006882 ORTHO05D008688 1.5e-12 76.6 72 55.6
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 1.5e-12 76.6 104 46.2
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 1.9e-12 76.3 65 60.0
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 2.5e-12 75.9 91 49.5
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 3.3e-12 75.5 99 50.5
Cpa.g.sc14.176 Carica papaya HOM05D006882 ORTHO05D008688 4.3e-12 75.1 103 48.5
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 4.3e-12 75.1 95 47.4
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 4.3e-12 75.1 122 41.8
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 4.3e-12 75.1 85 50.6
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 9.7e-12 73.9 97 47.4
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 1.3e-11 73.6 117 42.7
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 1.3e-11 73.6 77 54.5
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 2.2e-11 72.8 118 45.8
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 4.8e-11 71.6 105 45.7
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 4.8e-11 71.6 57 59.6
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 6.3e-11 71.2 77 55.8
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 8.2e-11 70.9 118 39.0
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 1.8e-10 69.7 60 56.7
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 1.8e-10 69.7 60 56.7
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 3.1e-10 68.9 79 48.1
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 4.1e-10 68.6 57 54.4
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 4.1e-10 68.6 92 47.8
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 9.1e-10 67.4 70 52.9
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 2.6e-09 65.9 119 42.0
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 2.6e-09 65.9 85 49.4
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 1.3e-08 63.5 51 62.7
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 1.7e-08 63.2 105 39.0
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 2.9e-08 62.4 122 36.9
ATR0177G043 Amborella trichopoda HOM05D006882 ORTHO05D008688 3.8e-08 62.0 53 58.5
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 3.8e-08 62.0 51 60.8
CsaV3_5G014380 Cucumis sativus L. HOM05D006882 ORTHO05D008688 5.0e-08 61.6 43 65.1
Nn1g08730 Nelumbo nucifera HOM05D006882 ORTHO05D008688 8.5e-08 60.8 58 51.7
PSO017G6201 Papaver somniferum HOM05D006882 ORTHO05D008688 8.5e-08 60.8 98 41.8
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 1.1e-07 60.5 105 43.8
Peaxi162Scf00298g00055 Petunia axillaris HOM05D006882 ORTHO05D008688 1.1e-07 60.5 71 49.3
Peaxi162Scf00329g00037 Petunia axillaris HOM05D006882 ORTHO05D008688 4.2e-07 58.5 82 43.9
Peaxi162Scf00254g00028 Petunia axillaris HOM05D006882 ORTHO05D008688 3.6e-06 55.5 54 51.9
Peaxi162Scf00025g00208 Petunia axillaris HOM05D006882 ORTHO05D008688 6.1e-06 54.7 75 45.3
Lsat_1_v5_gn_4_172620 Lactuca sativa HOM05D006882 ORTHO05D048217 7.9e-06 54.3 87 42.5


User provided reference genes

Program Settings