Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G01740 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 1.4e-58 229.6 127 100.0
AL3G10400 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 9.2e-55 216.9 127 89.8
Carub.0003s0032 Capsella rubella HOM05D005499 ORTHO05D006666 1.6e-54 216.1 127 91.3
A03p32370 Brassica napus HOM05D005499 ORTHO05D006666 7.6e-49 197.2 125 85.6
BolC3t16211H Brassica oleracea HOM05D005499 ORTHO05D006666 7.6e-49 197.2 125 85.6
BraA03t12407Z Brassica rapa HOM05D005499 ORTHO05D006666 7.6e-49 197.2 125 85.6
C03p39430 Brassica napus HOM05D005499 ORTHO05D006666 2.9e-48 195.3 125 84.8
CARHR075180 Cardamine hirsuta HOM05D005499 ORTHO05D006666 9.3e-47 190.3 125 88.8
Sp3g00320 Schrenkiella parvula HOM05D005499 ORTHO05D006666 4.6e-46 188.0 126 88.1
CARHR105740 Cardamine hirsuta HOM05D005499 ORTHO05D006666 2.3e-45 185.7 129 84.5
Thhalv10021760m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 2.3e-45 185.7 128 85.2
Aa31LG5G10870 Aethionema arabicum HOM05D005499 ORTHO05D006666 1.3e-43 179.9 133 74.4
CARHR199040 Cardamine hirsuta HOM05D005499 ORTHO05D006666 2.4e-42 175.6 122 76.2
Atru.chr6.2492 Acer truncatum HOM05D005499 ORTHO05D006666 9.0e-42 173.7 132 66.7
Dinv33378 Davidia involucrata HOM05D005499 ORTHO05D006666 1.5e-41 172.9 120 71.7
ECA238G0236 Erigeron canadensis HOM05D005499 ORTHO05D006666 2.6e-41 172.2 129 70.5
Cpa.g.sc130.24 Carica papaya HOM05D005499 ORTHO05D006666 3.4e-41 171.8 110 76.4
TWI36G0940 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 3.4e-41 171.8 111 76.6
Duzib187G1007 Durio zibethinus HOM05D005499 ORTHO05D006666 9.9e-41 170.2 126 69.0
THA.LOC104822403 Tarenaya hassleriana HOM05D005499 ORTHO05D006666 9.9e-41 170.2 131 76.3
COL.COLO4_29287 Corchorus olitorius HOM05D005499 ORTHO05D006666 1.3e-40 169.9 130 67.7
Gohir.D10G084868 Gossypium hirsutum HOM05D005499 ORTHO05D006666 1.3e-40 169.9 111 77.5
Lalb_Chr02g0157891 Lupinus albus HOM05D005499 ORTHO05D006666 1.7e-40 169.5 93 83.9
Gorai.011G092800 Gossypium raimondii HOM05D005499 ORTHO05D006666 2.9e-40 168.7 111 76.6
TWI56G1275 Tripterygium wilfordii HOM05D005499 ORTHO05D006666 2.9e-40 168.7 111 75.7
Thhalv10014999m.g Eutrema salsugineum HOM05D005499 ORTHO05D006666 3.8e-40 168.3 133 70.7
Gohir.A10G160300 Gossypium hirsutum HOM05D005499 ORTHO05D006666 4.9e-40 167.9 106 77.4
AT5G14290 Arabidopsis thaliana HOM05D005499 ORTHO05D006666 8.4e-40 167.2 122 72.1
Gorai.012G089400 Gossypium raimondii HOM05D005499 ORTHO05D006666 8.4e-40 167.2 122 69.7
Ciclev10017154m.g Citrus clementina HOM05D005499 ORTHO05D006666 1.4e-39 166.4 113 73.5
Duzib264G0656 Durio zibethinus HOM05D005499 ORTHO05D006666 1.4e-39 166.4 113 74.3
RcHm_v2.0_Chr3g0449841 Rosa chinensis HOM05D005499 ORTHO05D006666 1.4e-39 166.4 122 68.9
Phvul.003G262000 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 2.4e-39 165.6 131 67.2
Thecc.04G028500 Theobroma cacao HOM05D005499 ORTHO05D006666 2.4e-39 165.6 92 83.7
HanXRQChr01g0030421 Helianthus annuus HOM05D005499 ORTHO05D006666 3.2e-39 165.2 110 74.5
CiPaw.03G051000 Carya illinoinensis HOM05D005499 ORTHO05D006666 4.2e-39 164.9 132 65.2
Lalb_Chr21g0317581 Lupinus albus HOM05D005499 ORTHO05D006666 4.2e-39 164.9 111 71.2
Nn4g24319 Nelumbo nucifera HOM05D005499 ORTHO05D006666 5.4e-39 164.5 110 74.5
FAN05G4095 Fragaria x ananassa HOM05D005499 ORTHO05D006666 7.1e-39 164.1 93 82.8
Hma1.2p1_0279F.1_g112320 Hydrangea macrophylla HOM05D005499 ORTHO05D006666 9.3e-39 163.7 132 65.9
Eucgr.J02294 Eucalyptus grandis HOM05D005499 ORTHO05D006666 1.2e-38 163.3 113 71.7
FAN05G0237 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.6e-38 162.9 93 81.7
FAN05G2282 Fragaria x ananassa HOM05D005499 ORTHO05D006666 1.6e-38 162.9 93 81.7
Rhsim10G0010400 Rhododendron simsii HOM05D005499 ORTHO05D006666 1.6e-38 162.9 132 65.2
Migut.K01440 Erythranthe guttata HOM05D005499 ORTHO05D006666 2.1e-38 162.5 126 68.3
FvH4_6g02050 Fragaria vesca HOM05D005499 ORTHO05D006666 2.1e-38 162.5 93 81.7
FAN05G1403 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.1e-38 162.5 93 81.7
FAN09G0379 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.1e-38 162.5 93 81.7
FAN14G4216 Fragaria x ananassa HOM05D005499 ORTHO05D006666 2.1e-38 162.5 93 81.7
MBI11_g21381_MAGBIO Magnolia biondii HOM05D005499 ORTHO05D006666 2.1e-38 162.5 113 70.8
Nitab4.5_0012484g0010 Nicotiana tabacum HOM05D005499 ORTHO05D006666 2.1e-38 162.5 92 82.6
Gohir.D04G079400 Gossypium hirsutum HOM05D005499 ORTHO05D006666 3.5e-38 161.8 122 68.0
Solyc11g010180.2 Solanum lycopersicum HOM05D005499 ORTHO05D006666 3.5e-38 161.8 92 79.3
Sopen11g004960 Solanum pennellii HOM05D005499 ORTHO05D006666 3.5e-38 161.8 92 79.3
TAR371G0544 Trochodendron aralioides HOM05D005499 ORTHO05D006666 3.5e-38 161.8 110 72.7
DCAR_011296 Daucus carota HOM05D005499 ORTHO05D006666 4.6e-38 161.4 110 73.6
FAN14G1883 Fragaria x ananassa HOM05D005499 ORTHO05D006666 4.6e-38 161.4 93 81.7
FAN14G2627 Fragaria x ananassa HOM05D005499 ORTHO05D006666 4.6e-38 161.4 93 81.7
Nitab4.5_0000743g0030 Nicotiana tabacum HOM05D005499 ORTHO05D006666 4.6e-38 161.4 92 81.5
Oeu003270.1 Olea europaea HOM05D005499 ORTHO05D006666 4.6e-38 161.4 119 69.7
Aqoxy5G03538 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 6.0e-38 161.0 113 69.0
CSS0020557 Camellia sinensis var. sinensis HOM05D005499 ORTHO05D006666 6.0e-38 161.0 132 63.6
PSO478G5160 Papaver somniferum HOM05D005499 ORTHO05D006666 6.0e-38 161.0 113 73.5
Prupe.6G125800 Prunus persica HOM05D005499 ORTHO05D006666 6.0e-38 161.0 113 69.9
VMungo0464G1619 Vigna mungo HOM05D005499 ORTHO05D006666 6.0e-38 161.0 111 70.3
Glyma.19G077100 Glycine max HOM05D005499 ORTHO05D006666 7.9e-38 160.6 132 64.4
CANSAT11G2604 Cannabis sativa HOM05D005499 ORTHO05D006666 1.0e-37 160.2 125 65.6
Ca_25364_v3 Cicer arietinum L. HOM05D005499 ORTHO05D006666 1.0e-37 160.2 133 63.9
Lsat_1_v5_gn_3_10761 Lactuca sativa HOM05D005499 ORTHO05D006666 1.0e-37 160.2 93 80.6
PGSC0003DMG400016154 Solanum tuberosum HOM05D005499 ORTHO05D006666 1.0e-37 160.2 92 79.3
Cc10_g08070 Coffea canephora HOM05D005499 ORTHO05D006666 1.3e-37 159.8 110 73.6
Haze_14820 Corylus avellana HOM05D005499 ORTHO05D006666 1.3e-37 159.8 132 64.4
Manes.15G156800 Manihot esculenta HOM05D005499 ORTHO05D006666 1.3e-37 159.8 125 64.8
SalBow7G4317 Salvia bowleyana HOM05D005499 ORTHO05D006666 1.8e-37 159.5 110 70.9
Cfa007270 Carpinus fangiana HOM05D005499 ORTHO05D006666 2.3e-37 159.1 132 63.6
Lj6g0007933 Lotus japonicus HOM05D005499 ORTHO05D006666 2.3e-37 159.1 93 80.6
QL02p072772 Quercus lobata HOM05D005499 ORTHO05D006666 3.0e-37 158.7 131 63.4
Sed0019428 Sechium edule HOM05D005499 ORTHO05D006666 5.1e-37 157.9 133 63.2
TPR.G3708 Trifolium pratense HOM05D005499 ORTHO05D006666 5.1e-37 157.9 132 62.1
arahy.Tifrunner.gnm1.ann1.C4BPDT Arachis hypogaea HOM05D005499 ORTHO05D006666 6.7e-37 157.5 132 61.4
Actinidia05936 Actinidia chinensis HOM05D005499 ORTHO05D006666 8.7e-37 157.1 132 64.4
FvH4_4g13440 Fragaria vesca HOM05D005499 ORTHO05D006666 8.7e-37 157.1 111 71.2
FAN12G0501 Fragaria x ananassa HOM05D005499 ORTHO05D006666 8.7e-37 157.1 111 71.2
Potri.001G335600 Populus trichocarpa HOM05D005499 ORTHO05D006666 8.7e-37 157.1 132 65.2
arahy.Tifrunner.gnm1.ann1.JB8R4I Arachis hypogaea HOM05D005499 ORTHO05D006666 1.5e-36 156.4 111 68.5
unitig_32.g10669 Utricularia gibba HOM05D005499 ORTHO05D006666 1.9e-36 156.0 111 70.3
Gohir.A05G341200 Gossypium hirsutum HOM05D005499 ORTHO05D006666 2.5e-36 155.6 92 80.4
Sabra16G0216600 Salix brachista HOM05D005499 ORTHO05D006666 2.5e-36 155.6 132 64.4
SGA_v2.0_scaffold47G17558 Striga asiatica HOM05D005499 ORTHO05D006666 2.5e-36 155.6 119 68.9
Medtr6g078300 Medicago truncatula HOM05D005499 ORTHO05D006666 3.3e-36 155.2 133 59.4
Psat1g031800 Pisum sativum HOM05D005499 ORTHO05D006666 3.3e-36 155.2 92 76.1
QL05p048106 Quercus lobata HOM05D005499 ORTHO05D006666 3.3e-36 155.2 91 80.2
ClCG04G001400 Citrullus lanatus HOM05D005499 ORTHO05D006666 5.6e-36 154.5 134 63.4
Glyma.05G073700 Glycine max HOM05D005499 ORTHO05D006666 7.4e-36 154.1 121 64.5
Phvul.003G138900 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 7.4e-36 154.1 121 66.9
Phvul.003G139152 Phaseolus vulgaris HOM05D005499 ORTHO05D006666 7.4e-36 154.1 121 66.9
PSO782G3924 Papaver somniferum HOM05D005499 ORTHO05D006666 9.6e-36 153.7 113 70.8
TAR629G1334 Trochodendron aralioides HOM05D005499 ORTHO05D006666 1.6e-35 152.9 122 63.1
AUR62036750 Chenopodium quinoa HOM05D005499 ORTHO05D006666 2.1e-35 152.5 110 69.1
Sc10g0004570 Simmondsia chinensis HOM05D005499 ORTHO05D006666 2.8e-35 152.1 92 75.0
AL6G24990 Arabidopsis lyrata HOM05D005499 ORTHO05D006666 3.7e-35 151.8 93 81.7
MSTRG.3267 Avicennia marina HOM05D005499 ORTHO05D006666 3.7e-35 151.8 111 67.6
MELO3C008981.2 Cucumis melo HOM05D005499 ORTHO05D006666 3.7e-35 151.8 118 65.3
Hund13392 Selenicereus undatus HOM05D005499 ORTHO05D006666 3.7e-35 151.8 92 77.2
AUR62013851 Chenopodium quinoa HOM05D005499 ORTHO05D006666 1.1e-34 150.2 110 69.1
Peaxi162Scf00016g00048 Petunia axillaris HOM05D005499 ORTHO05D006666 1.4e-34 149.8 86 77.9
CAN.G905.22 Capsicum annuum HOM05D005499 ORTHO05D006666 2.4e-34 149.1 83 80.7
Aqoxy3G01444 Aquilegia oxysepala HOM05D005499 ORTHO05D006666 4.0e-34 148.3 92 77.2
CsaV3_4G031040 Cucumis sativus L. HOM05D005499 ORTHO05D006666 5.3e-34 147.9 132 60.6
Ah.00g000560 Amaranthus hybridus HOM05D005499 ORTHO05D006666 9.0e-34 147.1 117 63.2
Medtr4g073700 Medicago truncatula HOM05D005499 ORTHO05D006666 1.5e-33 146.4 113 67.3
HPP92_006243 Vanilla planifolia HOM05D005499 ORTHO05D006666 2.6e-33 145.6 110 64.5
Cc07_g00480 Coffea canephora HOM05D005499 ORTHO05D006666 1.7e-32 142.9 110 72.7
Psat7g172960 Pisum sativum HOM05D005499 ORTHO05D006666 2.2e-32 142.5 111 66.7
PGSC0003DMG400023637 Solanum tuberosum HOM05D005499 ORTHO05D006666 4.9e-32 141.4 110 63.6
ATR1098G108 Amborella trichopoda HOM05D005499 ORTHO05D006666 8.4e-32 140.6 111 69.4
Nitab4.5_0003764g0020 Nicotiana tabacum HOM05D005499 ORTHO05D006666 8.4e-32 140.6 92 72.8
Os12g0244200 Oryza sativa ssp. japonica HOM05D005499 ORTHO05D006666 1.9e-31 139.4 123 59.3
EL10Ac2g02820 Beta vulgaris HOM05D005499 ORTHO05D006666 4.6e-30 134.8 132 55.3
Zm00001eb328460 Zea mays HOM05D005499 ORTHO05D006666 6.0e-30 134.4 93 68.8
SHI11403 Sapria himalayana HOM05D005499 ORTHO05D006666 1.0e-29 133.7 113 59.3
Sed0018883 Sechium edule HOM05D005499 ORTHO05D006666 2.3e-29 132.5 129 57.4
PSO782G2325 Papaver somniferum HOM05D005499 ORTHO05D006666 3.0e-29 132.1 99 68.7
FAN21G0236 Fragaria x ananassa HOM05D005499 ORTHO05D006666 9.6e-28 127.1 78 73.1
SEGI_30393 Sequoiadendron giganteum HOM05D005499 ORTHO05D006666 2.0e-25 119.4 110 61.8
CARHR266370 Cardamine hirsuta HOM05D005499 ORTHO05D006666 5.5e-23 111.3 90 78.9
Nn1g08773 Nelumbo nucifera HOM05D005499 ORTHO05D006666 1.3e-21 106.7 96 60.4
FAN02G3728 Fragaria x ananassa HOM05D005499 ORTHO05D006666 5.1e-21 104.8 57 80.7
Gohir.1Z049635 Gossypium hirsutum HOM05D005499 ORTHO05D006666 5.7e-20 101.3 70 71.4
CBR_g38683 Chara braunii HOM05D005499 ORTHO05D006666 9.7e-20 100.5 106 50.0
Pp3c26_11040 Physcomitrium patens HOM05D005499 ORTHO05D006666 3.7e-19 98.6 92 53.3
Mapoly0005s0032 Marchantia polymorpha HOM05D005499 ORTHO05D006666 4.1e-18 95.1 83 51.8
AagrBONN_evm.TU.Sc2ySwM_362.2497 Anthoceros agrestis HOM05D005499 ORTHO05D006666 2.6e-17 92.4 81 54.3
SMO164G0004 Selaginella moellendorffii HOM05D005499 ORTHO05D006666 2.6e-17 92.4 110 43.6
TAR374G0914 Trochodendron aralioides HOM05D005499 ORTHO05D006666 2.1e-14 82.8 62 69.4
MCO16G647 Micromonas commoda HOM05D005499 ORTHO05D006666 2.2e-11 72.8 106 39.6
Cre12.g546000 Chlamydomonas reinhardtii HOM05D005499 ORTHO05D006666 4.1e-10 68.6 88 39.8
PRCOL_00001894 Prasinoderma coloniale HOM05D005499 ORTHO05D006666 7.9e-06 54.3 81 37.0


User provided reference genes

Program Settings