Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G01360 Arabidopsis thaliana HOM05D006160 ORTHO05D007674 3.6e-172 608.2 320 100.0
Carub.0003s0073 Capsella rubella HOM05D006160 ORTHO05D007674 1.8e-155 552.7 320 89.7
Thhalv10022440m.g Eutrema salsugineum HOM05D006160 ORTHO05D007674 3.2e-152 542.0 318 89.0
CARHR075620 Cardamine hirsuta HOM05D006160 ORTHO05D007674 3.5e-151 538.5 318 88.4
AL3G10850 Arabidopsis lyrata HOM05D006160 ORTHO05D007674 6.0e-151 537.7 329 86.3
Sp3g00710 Schrenkiella parvula HOM05D006160 ORTHO05D007674 1.3e-150 536.6 317 87.7
BcaC05g30463 Brassica carinata HOM05D006160 ORTHO05D007674 2.1e-148 529.3 320 86.9
C09p75210 Brassica napus HOM05D006160 ORTHO05D007674 6.4e-145 517.7 314 85.7
BraA05t23194Z Brassica rapa HOM05D006160 ORTHO05D007674 1.4e-144 516.5 320 85.3
A05p44620 Brassica napus HOM05D006160 ORTHO05D007674 2.4e-144 515.8 320 84.7
BolC5t35143H Brassica oleracea HOM05D006160 ORTHO05D007674 3.2e-144 515.4 315 85.7
Aa31LG5G10480 Aethionema arabicum HOM05D006160 ORTHO05D007674 7.6e-130 467.6 323 76.2
THA.LOC104802410 Tarenaya hassleriana HOM05D006160 ORTHO05D007674 6.0e-127 458.0 329 75.1
Cpa.g.c29962.2 Carica papaya HOM05D006160 ORTHO05D007674 7.2e-88 328.2 328 54.0
Potri.005G122800 Populus trichocarpa HOM05D006160 ORTHO05D007674 1.1e-83 314.3 333 54.1
ClCG10G014570 Citrullus lanatus HOM05D006160 ORTHO05D007674 4.1e-83 312.4 321 56.1
MD09G1040200 Malus domestica HOM05D006160 ORTHO05D007674 4.1e-83 312.4 334 51.8
CsaV3_3G042010 Cucumis sativus L. HOM05D006160 ORTHO05D007674 1.5e-82 310.5 337 53.7
MELO3C009921.2 Cucumis melo HOM05D006160 ORTHO05D007674 2.6e-82 309.7 335 54.0
QL02p078501 Quercus lobata HOM05D006160 ORTHO05D007674 3.4e-82 309.3 334 50.0
MD17G1040800 Malus domestica HOM05D006160 ORTHO05D007674 5.9e-82 308.5 334 51.5
COL.COLO4_34360 Corchorus olitorius HOM05D006160 ORTHO05D007674 1.0e-81 307.8 342 51.5
Sabra05G0101000 Salix brachista HOM05D006160 ORTHO05D007674 1.0e-81 307.8 328 53.7
CiPaw.04G022200 Carya illinoinensis HOM05D006160 ORTHO05D007674 2.2e-81 306.6 322 53.4
Ciclev10013666m.g Citrus clementina HOM05D006160 ORTHO05D007674 2.2e-81 306.6 328 53.4
Haze_14622 Corylus avellana HOM05D006160 ORTHO05D007674 6.5e-81 305.1 336 51.5
Manes.11G038900 Manihot esculenta HOM05D006160 ORTHO05D007674 1.9e-80 303.5 340 52.1
CSS0008843 Camellia sinensis var. sinensis HOM05D006160 ORTHO05D007674 2.5e-80 303.1 332 50.3
CSS0046343 Camellia sinensis var. sinensis HOM05D006160 ORTHO05D007674 2.5e-80 303.1 332 50.3
Cfa007476 Carpinus fangiana HOM05D006160 ORTHO05D007674 2.5e-80 303.1 336 50.6
Thecc.04G002600 Theobroma cacao HOM05D006160 ORTHO05D007674 2.5e-80 303.1 340 50.9
Thecc.04G002700 Theobroma cacao HOM05D006160 ORTHO05D007674 2.5e-80 303.1 340 50.9
Prupe.3G278200 Prunus persica HOM05D006160 ORTHO05D007674 7.2e-80 301.6 334 49.7
Sed0020076 Sechium edule HOM05D006160 ORTHO05D007674 1.6e-79 300.4 319 54.2
PGR083G2234 Punica granatum HOM05D006160 ORTHO05D007674 1.0e-78 297.7 349 51.0
RcHm_v2.0_Chr2g0170271 Rosa chinensis HOM05D006160 ORTHO05D007674 1.0e-78 297.7 331 50.5
Sopen02g032010 Solanum pennellii HOM05D006160 ORTHO05D007674 3.9e-78 295.8 320 51.2
Solyc02g087260.1 Solanum lycopersicum HOM05D006160 ORTHO05D007674 5.2e-78 295.4 320 51.2
PGSC0003DMG400001293 Solanum tuberosum HOM05D006160 ORTHO05D007674 6.7e-78 295.0 320 51.2
CiPaw.03G033700 Carya illinoinensis HOM05D006160 ORTHO05D007674 2.0e-77 293.5 337 49.9
Rhsim08G0057500 Rhododendron simsii HOM05D006160 ORTHO05D007674 3.3e-77 292.7 327 51.1
Duzib264G1011 Durio zibethinus HOM05D006160 ORTHO05D007674 4.4e-77 292.4 337 50.4
Rhsim08G0061700 Rhododendron simsii HOM05D006160 ORTHO05D007674 5.7e-77 292.0 327 51.1
Hma1.2p1_0849F.1_g228140 Hydrangea macrophylla HOM05D006160 ORTHO05D007674 7.4e-77 291.6 335 50.1
Nitab4.5_0007185g0010 Nicotiana tabacum HOM05D006160 ORTHO05D007674 7.4e-77 291.6 334 48.8
Eucgr.J02169 Eucalyptus grandis HOM05D006160 ORTHO05D007674 9.7e-77 291.2 343 50.4
TAR629G0883 Trochodendron aralioides HOM05D006160 ORTHO05D007674 2.2e-76 290.0 331 51.1
TWI56G1459 Tripterygium wilfordii HOM05D006160 ORTHO05D007674 2.8e-76 289.7 344 49.1
DCAR_013983 Daucus carota HOM05D006160 ORTHO05D007674 6.3e-76 288.5 331 48.3
Gohir.A05G361800 Gossypium hirsutum HOM05D006160 ORTHO05D007674 4.1e-75 285.8 340 49.1
Duzib147G1447 Durio zibethinus HOM05D006160 ORTHO05D007674 5.3e-75 285.4 339 49.9
CAN.G206.64 Capsicum annuum HOM05D006160 ORTHO05D007674 1.6e-74 283.9 318 48.7
Actinidia33976 Actinidia chinensis HOM05D006160 ORTHO05D007674 1.7e-73 280.4 331 48.3
Gorai.012G058700 Gossypium raimondii HOM05D006160 ORTHO05D007674 2.5e-72 276.6 339 47.5
Oeu050236.1 Olea europaea HOM05D006160 ORTHO05D007674 2.5e-72 276.6 335 44.5
Gohir.D04G052600 Gossypium hirsutum HOM05D006160 ORTHO05D007674 3.2e-72 276.2 339 47.5
GSVIVG01032544001 Vitis vinifera HOM05D006160 ORTHO05D007674 2.7e-71 273.1 324 48.8
Nn4g22919 Nelumbo nucifera HOM05D006160 ORTHO05D007674 3.6e-71 272.7 329 48.0
MSTRG.15499 Avicennia marina HOM05D006160 ORTHO05D007674 1.4e-70 270.8 347 46.4
Cc07_g02680 Coffea canephora HOM05D006160 ORTHO05D007674 2.3e-70 270.0 324 47.2
FAN05G0598 Fragaria x ananassa HOM05D006160 ORTHO05D007674 3.0e-70 269.6 316 47.8
FAN09G3358 Fragaria x ananassa HOM05D006160 ORTHO05D007674 3.0e-70 269.6 332 46.7
FAN14G4363 Fragaria x ananassa HOM05D006160 ORTHO05D007674 4.0e-70 269.2 332 46.4
Migut.K01355 Erythranthe guttata HOM05D006160 ORTHO05D007674 6.7e-70 268.5 337 47.8
FvH4_6g50020 Fragaria vesca HOM05D006160 ORTHO05D007674 6.7e-70 268.5 332 46.4
TAR622G0926 Trochodendron aralioides HOM05D006160 ORTHO05D007674 8.8e-70 268.1 339 46.0
Nn3g17021 Nelumbo nucifera HOM05D006160 ORTHO05D007674 1.5e-69 267.3 338 46.7
PSO591G0049 Papaver somniferum HOM05D006160 ORTHO05D007674 2.2e-68 263.5 322 46.6
AUR62022120 Chenopodium quinoa HOM05D006160 ORTHO05D007674 2.8e-68 263.1 337 47.5
VMungo1383G0493 Vigna mungo HOM05D006160 ORTHO05D007674 6.3e-68 261.9 332 47.0
Sc20g0002680 Simmondsia chinensis HOM05D006160 ORTHO05D007674 8.2e-68 261.5 335 46.6
PSO832G1329 Papaver somniferum HOM05D006160 ORTHO05D007674 4.1e-67 259.2 317 46.4
Gohir.A07G181850 Gossypium hirsutum HOM05D006160 ORTHO05D007674 1.6e-66 257.3 308 48.7
Lalb_Chr10g0093421 Lupinus albus HOM05D006160 ORTHO05D007674 1.6e-66 257.3 337 46.0
SGA_v2.0_scaffold224G42970 Striga asiatica HOM05D000629 ORTHO05D000576 2.0e-66 256.9 300 48.3
Gohir.A01G199600 Gossypium hirsutum HOM05D006160 ORTHO05D007674 3.5e-66 256.1 317 48.3
Gohir.D12G020250 Gossypium hirsutum HOM05D006160 ORTHO05D007674 4.5e-66 255.8 271 51.3
Ca_27075_v3 Cicer arietinum L. HOM05D006160 ORTHO05D007674 5.9e-66 255.4 328 43.3
Gohir.A02G134601 Gossypium hirsutum HOM05D006160 ORTHO05D007674 5.9e-66 255.4 309 47.9
Gohir.A06G128104 Gossypium hirsutum HOM05D006160 ORTHO05D007674 5.9e-66 255.4 305 48.5
Gohir.A12G126333 Gossypium hirsutum HOM05D006160 ORTHO05D007674 5.9e-66 255.4 305 48.9
Gohir.D02G203256 Gossypium hirsutum HOM05D006160 ORTHO05D007674 5.9e-66 255.4 312 47.8
Gohir.A03G007400 Gossypium hirsutum HOM05D006160 ORTHO05D007674 1.0e-65 254.6 305 48.5
Phvul.001G084200 Phaseolus vulgaris HOM05D006160 ORTHO05D007674 1.3e-65 254.2 329 46.5
Gohir.A10G208350 Gossypium hirsutum HOM05D006160 ORTHO05D007674 2.9e-65 253.1 305 48.2
Lsat_1_v5_gn_0_16501 Lactuca sativa HOM05D006160 ORTHO05D007674 5.0e-65 252.3 336 43.8
Lj7P407T47 Lonicera japonica HOM05D006160 ORTHO05D007674 5.0e-65 252.3 279 48.4
Glyma.19G103966 Glycine max HOM05D006160 ORTHO05D007674 6.5e-65 251.9 333 47.1
Gohir.D09G039200 Gossypium hirsutum HOM05D006160 ORTHO05D007674 8.5e-65 251.5 268 50.7
Medtr7g034135 Medicago truncatula HOM05D006160 ORTHO05D007674 1.1e-64 251.1 326 46.6
Gohir.D09G171500 Gossypium hirsutum HOM05D006160 ORTHO05D007674 2.5e-64 250.0 305 47.9
SalBow1G6035 Salvia bowleyana HOM05D006160 ORTHO05D007674 8.0e-63 245.0 311 45.0
Gorai.006G069300 Gossypium raimondii HOM05D006160 ORTHO05D007674 1.8e-62 243.8 263 50.6
unitig_748.g8439 Utricularia gibba HOM05D006160 ORTHO05D007674 8.8e-62 241.5 342 42.4
MBI15_g14839_MAGBIO Magnolia biondii HOM05D006160 ORTHO05D007674 1.5e-61 240.7 302 47.7
Nitab4.5_0004905g0010 Nicotiana tabacum HOM05D006160 ORTHO05D007674 4.4e-61 239.2 215 56.7
Gorai.001G255400 Gossypium raimondii HOM05D006160 ORTHO05D007674 1.7e-60 237.3 284 47.2
TPR.G39149 Trifolium pratense HOM05D006160 ORTHO05D007674 6.3e-60 235.3 308 46.1
Psat3g172360 Pisum sativum HOM05D006160 ORTHO05D007674 2.4e-59 233.4 330 43.3
Aqoxy3G03111 Aquilegia oxysepala HOM05D006160 ORTHO05D007674 1.0e-57 228.0 334 41.6
CDE04G3446 Ceratophyllum demersum HOM05D006160 ORTHO05D007674 8.6e-57 224.9 322 43.5
Gorai.006G069400 Gossypium raimondii HOM05D006160 ORTHO05D007674 1.5e-56 224.2 258 48.4
ATR0021G006 Amborella trichopoda HOM05D006160 ORTHO05D007674 2.6e-53 213.4 317 40.7
ECA246G4454 Erigeron canadensis HOM05D006160 ORTHO05D007674 5.7e-53 212.2 190 53.7
EL10Ac7g18003 Beta vulgaris HOM05D006160 ORTHO05D007674 1.7e-52 210.7 333 43.5
HanXRQChr17g0547171 Helianthus annuus HOM05D006160 ORTHO05D007674 4.9e-52 209.1 328 39.9
Peaxi162Scf00129g00711 Petunia axillaris HOM05D006160 ORTHO05D007674 1.7e-49 200.7 176 54.0
AUR62001209 Chenopodium quinoa HOM05D006160 ORTHO05D007674 5.0e-49 199.1 198 55.1
SEGI_35137 Sequoiadendron giganteum HOM05D006160 ORTHO05D007674 2.3e-46 190.3 328 37.8
Lsat_1_v5_gn_4_173961 Lactuca sativa HOM05D006160 ORTHO05D007674 4.4e-45 186.0 148 57.4
arahy.Tifrunner.gnm1.ann1.JXM62U Arachis hypogaea HOM05D006160 ORTHO05D007674 1.2e-42 177.9 146 57.5
HPP92_025618 Vanilla planifolia HOM05D006160 ORTHO05D007674 5.8e-37 159.1 325 36.6
Gohir.D06G170950 Gossypium hirsutum HOM05D006160 ORTHO05D007674 7.5e-37 158.7 164 51.2
Zm00001eb279980 Zea mays HOM05D006160 ORTHO05D007674 6.4e-36 155.6 237 40.1
Lj1g0002469 Lotus japonicus HOM05D006160 ORTHO05D007674 1.1e-35 154.8 200 43.5
Os06g0238900 Oryza sativa ssp. japonica HOM05D006160 ORTHO05D007674 4.6e-34 149.4 323 35.3
Pp3c16_16610 Physcomitrium patens HOM05D006160 ORTHO05D007674 5.8e-29 132.5 198 40.4
CDE07G1150 Ceratophyllum demersum HOM05D006160 ORTHO05D007674 2.4e-27 127.1 233 35.6
Cc11_g06840 Coffea canephora HOM05D006160 ORTHO05D007674 2.4e-27 127.1 192 40.6
unitig_32.g10740 Utricularia gibba HOM05D006160 ORTHO05D007674 1.7e-25 120.9 119 48.7
Mapoly0039s0012 Marchantia polymorpha HOM05D006160 ORTHO05D007674 5.1e-25 119.4 270 32.2
Dinv35018 Davidia involucrata HOM05D006160 ORTHO05D007674 2.8e-23 113.6 337 31.5
Cc11_g06740 Coffea canephora HOM05D006160 ORTHO05D007674 6.2e-23 112.5 214 37.4
SMO115G0117 Selaginella moellendorffii HOM05D006160 ORTHO05D007674 2.4e-22 110.5 150 38.7
Atru.chr8.2408 Acer truncatum HOM05D006160 ORTHO05D007674 4.0e-22 109.8 170 42.4
Ah.08g218630 Amaranthus hybridus HOM05D006160 ORTHO05D007674 1.2e-21 108.2 134 48.5
SMO329G0094 Selaginella moellendorffii HOM05D001193 ORTHO05D001016 3.1e-14 83.6 298 28.2
SMO115G0077 Selaginella moellendorffii HOM05D000422 ORTHO05D002369 9.9e-13 78.6 171 31.0
Pp3c1_25080 Physcomitrium patens HOM05D001193 ORTHO05D001016 1.7e-12 77.8 178 28.7
Nn3g21170 Nelumbo nucifera HOM05D001193 ORTHO05D001016 1.9e-11 74.3 180 27.8
EL10Ac2g03533 Beta vulgaris HOM05D001193 ORTHO05D001016 9.3e-11 72.0 201 25.4
Psat6g230800 Pisum sativum HOM05D001193 ORTHO05D001016 3.5e-10 70.1 205 24.9
Nn2g15763 Nelumbo nucifera HOM05D001193 ORTHO05D001016 7.8e-10 68.9 267 26.6
unitig_32.g10741 Utricularia gibba HOM05D006160 ORTHO05D007674 7.8e-10 68.9 145 35.2
ATR0598G351 Amborella trichopoda HOM05D001193 ORTHO05D001016 1.3e-09 68.2 203 25.6
Mapoly0016s0059 Marchantia polymorpha HOM05D001193 ORTHO05D001016 1.3e-09 68.2 168 26.2
Os08g0462800 Oryza sativa ssp. japonica HOM05D001193 ORTHO05D001016 1.3e-09 68.2 162 28.4
Psat6g230840 Pisum sativum HOM05D001193 ORTHO05D001016 1.3e-09 68.2 262 24.0
SEGI_08849 Sequoiadendron giganteum HOM05D001193 ORTHO05D001016 6.6e-09 65.9 181 24.9
Sc09g0006600 Simmondsia chinensis HOM05D001193 ORTHO05D001016 8.7e-09 65.5 176 24.4
BcaC01g01500 Brassica carinata HOM05D001193 ORTHO05D001016 1.1e-08 65.1 174 25.9
BolC3t21568H Brassica oleracea HOM05D001193 ORTHO05D001016 1.1e-08 65.1 174 25.9
BraA08t32136Z Brassica rapa HOM05D001193 ORTHO05D001016 1.1e-08 65.1 174 25.9
Lalb_Chr18g0056051 Lupinus albus HOM05D001193 ORTHO05D001016 1.5e-08 64.7 305 22.3
Os11g0621000 Oryza sativa ssp. japonica HOM05D001193 ORTHO05D001016 1.5e-08 64.7 182 26.9
HPP92_028664 Vanilla planifolia HOM05D001193 ORTHO05D001016 2.5e-08 63.9 218 24.8
AagrBONN_evm.TU.Sc2ySwM_117.445 Anthoceros agrestis HOM05D001193 ORTHO05D001016 3.3e-08 63.5 168 28.0
Lj5g0005816 Lotus japonicus HOM05D001193 ORTHO05D001016 3.3e-08 63.5 177 24.9
Os09g0444900 Oryza sativa ssp. japonica HOM05D001193 ORTHO05D001016 5.6e-08 62.8 280 23.9
Actinidia06855 Actinidia chinensis HOM05D001193 ORTHO05D001016 7.3e-08 62.4 137 27.0
Dinv22847 Davidia involucrata HOM05D001193 ORTHO05D001016 7.3e-08 62.4 173 26.6
Aqoxy7G00856 Aquilegia oxysepala HOM05D001193 ORTHO05D001016 2.8e-07 60.5 172 26.2
Hma1.2p1_0385F.1_g141480 Hydrangea macrophylla HOM05D008048 ORTHO05D010199 3.6e-07 60.1 233 27.5
Nn2g12092 Nelumbo nucifera HOM05D006160 ORTHO05D007674 3.6e-07 60.1 36 63.9
Cc09_g09630 Coffea canephora HOM05D001193 ORTHO05D001016 4.8e-07 59.7 172 23.3
DCAR_028244 Daucus carota HOM05D001193 ORTHO05D001016 4.8e-07 59.7 172 27.3
ECA246G1774 Erigeron canadensis HOM05D001193 ORTHO05D001016 4.8e-07 59.7 201 25.4
PGR042G2327 Punica granatum HOM05D001193 ORTHO05D001016 4.8e-07 59.7 185 25.9
TPR.G2462 Trifolium pratense HOM05D001193 ORTHO05D001016 4.8e-07 59.7 261 23.8
RcHm_v2.0_Chr5g0081481 Rosa chinensis HOM05D001193 ORTHO05D001016 6.2e-07 59.3 308 23.7
Dinv29058 Davidia involucrata HOM05D001193 ORTHO05D001016 8.1e-07 58.9 190 25.3
Rhsim11G0026800 Rhododendron simsii HOM05D001193 ORTHO05D001016 8.1e-07 58.9 194 25.3
Aa31LG10G4530 Aethionema arabicum HOM05D001193 ORTHO05D001016 1.1e-06 58.5 178 25.8
MSTRG.13977 Avicennia marina HOM05D001193 ORTHO05D001016 1.1e-06 58.5 185 23.2
Os09g0444800 Oryza sativa ssp. japonica HOM05D001193 ORTHO05D001016 1.1e-06 58.5 284 23.9
Aqoxy5G03031 Aquilegia oxysepala HOM05D001193 ORTHO05D001016 1.4e-06 58.2 264 22.3
Cc01_g01620 Coffea canephora HOM05D001193 ORTHO05D001016 1.4e-06 58.2 164 24.4
Lj6P622T54 Lonicera japonica HOM05D008048 ORTHO05D010199 1.4e-06 58.2 151 31.1
SHI30458 Sapria himalayana HOM05D001193 ORTHO05D001016 1.4e-06 58.2 268 22.4
HanXRQChr06g0172841 Helianthus annuus HOM05D001193 ORTHO05D001016 1.8e-06 57.8 166 26.5
SGA_v2.0_scaffold6G03447 Striga asiatica HOM05D001193 ORTHO05D001016 1.8e-06 57.8 302 23.5
Zm00001eb314330 Zea mays HOM05D001193 ORTHO05D001016 1.8e-06 57.8 313 22.7
vmacro00071 Vaccinium macrocarpon HOM05D001193 ORTHO05D001016 2.4e-06 57.4 160 28.1
Actinidia06854 Actinidia chinensis HOM05D001240 ORTHO05D002450 3.1e-06 57.0 200 24.0
Dinv28030 Davidia involucrata HOM05D001193 ORTHO05D001016 3.1e-06 57.0 146 27.4
PGR102G0601 Punica granatum HOM05D001193 ORTHO05D001016 3.1e-06 57.0 281 22.1
Atru.chr6.1502 Acer truncatum HOM05D001193 ORTHO05D001016 4.0e-06 56.6 169 23.7
Lj1P551T7 Lonicera japonica HOM05D001193 ORTHO05D001016 4.0e-06 56.6 223 22.4
Lalb_Chr19g0128481 Lupinus albus HOM05D008048 ORTHO05D010199 4.0e-06 56.6 236 27.5
Lj1P549T4 Lonicera japonica HOM05D001193 ORTHO05D001016 5.3e-06 56.2 223 22.4
MSTRG.4161 Avicennia marina HOM05D008048 ORTHO05D010199 6.9e-06 55.8 210 27.1
ECA246G0418 Erigeron canadensis HOM05D001193 ORTHO05D001016 9.0e-06 55.5 177 24.3


User provided reference genes

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