Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.3e-213 746.1 378 100.0
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 2.6e-198 695.3 379 94.2
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 9.1e-183 643.7 382 88.0
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 8.8e-178 627.1 386 85.2
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.5e-177 626.3 376 84.8
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 2.1e-171 605.9 379 83.4
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 4.9e-168 594.7 375 82.9
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 4.1e-167 591.7 374 82.9
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 7.0e-167 590.9 375 82.4
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 3.5e-166 588.6 375 82.1
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 6.6e-165 584.3 379 80.7
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 6.6e-165 584.3 379 80.7
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 1.5e-164 583.2 380 80.0
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 1.5e-164 583.2 367 83.1
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 7.3e-164 580.9 379 80.2
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 7.3e-164 580.9 379 80.2
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 9.5e-164 580.5 371 80.9
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 1.2e-163 580.1 379 80.2
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 3.7e-144 515.4 402 70.4
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 1.7e-125 453.4 388 64.7
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 2.5e-124 449.5 374 65.5
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 4.3e-124 448.7 393 61.3
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 4.0e-122 442.2 374 63.1
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 5.3e-122 441.8 385 62.1
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 9.0e-122 441.0 381 61.9
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 2.0e-121 439.9 382 61.8
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 3.4e-121 439.1 371 63.6
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 3.4e-121 439.1 360 65.0
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 4.5e-121 438.7 371 64.7
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.7e-120 436.8 381 62.2
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 2.2e-120 436.4 385 60.0
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 2.9e-120 436.0 353 63.7
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 3.8e-120 435.6 385 60.0
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.4e-119 433.7 251 86.9
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 1.9e-119 433.3 379 61.7
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 1.9e-119 433.3 376 62.2
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 9.3e-119 431.0 388 61.9
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 2.1e-118 429.9 382 61.0
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 2.1e-118 429.9 384 60.7
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 7.9e-118 427.9 377 62.9
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 7.9e-118 427.9 379 60.4
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.0e-117 427.6 377 61.0
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.3e-117 427.2 384 60.7
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 1.8e-117 426.8 382 61.0
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 1.8e-117 426.8 384 60.7
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 2.3e-117 426.4 389 60.7
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 5.1e-117 425.2 375 61.6
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 5.1e-117 425.2 390 59.7
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 1.1e-116 424.1 371 61.2
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 1.9e-116 423.3 371 61.5
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 3.3e-116 422.5 376 61.2
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 3.3e-116 422.5 379 61.2
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 5.6e-116 421.8 394 59.1
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 1.6e-115 420.2 371 62.3
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 2.1e-115 419.9 351 63.0
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 6.2e-115 418.3 361 62.0
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 1.1e-114 417.5 361 62.6
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.1e-114 417.5 360 61.4
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 1.4e-114 417.2 376 60.4
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 1.4e-114 417.2 363 61.4
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 5.3e-114 415.2 403 57.8
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 5.3e-114 415.2 385 58.2
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 1.2e-113 414.1 376 60.1
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 1.2e-113 414.1 384 58.6
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 1.5e-113 413.7 377 60.5
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 1.5e-113 413.7 377 60.5
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.5e-113 413.7 359 60.7
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 1.5e-113 413.7 384 58.3
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 2.0e-113 413.3 362 61.9
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 2.6e-113 412.9 372 58.3
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 3.4e-113 412.5 372 59.1
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 4.5e-113 412.1 378 57.9
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 5.8e-113 411.8 376 60.4
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 7.6e-113 411.4 403 57.3
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 7.6e-113 411.4 417 56.4
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 7.6e-113 411.4 361 60.9
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 9.9e-113 411.0 359 60.4
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 1.3e-112 410.6 359 59.9
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 3.8e-112 409.1 387 58.7
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 8.4e-112 407.9 392 55.9
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 1.4e-111 407.1 361 61.2
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.2e-110 404.1 384 58.9
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.6e-110 403.7 392 55.9
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 1.6e-110 403.7 390 56.7
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 1.6e-110 403.7 355 60.6
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 1.6e-110 403.7 355 60.6
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 2.1e-110 403.3 377 58.4
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 2.7e-110 402.9 359 59.1
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 2.7e-110 402.9 389 57.8
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 2.7e-110 402.9 383 59.0
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 4.6e-110 402.1 393 56.5
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 6.0e-110 401.7 362 60.2
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 1.0e-109 401.0 369 59.6
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 1.3e-109 400.6 386 58.0
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 1.3e-109 400.6 288 69.8
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 2.3e-109 399.8 382 56.5
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 2.3e-109 399.8 360 59.4
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 2.3e-109 399.8 387 57.6
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 3.0e-109 399.4 355 60.3
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 3.0e-109 399.4 369 57.5
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 8.7e-109 397.9 400 55.8
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 1.5e-108 397.1 398 56.5
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.9e-108 396.7 380 57.4
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 1.9e-108 396.7 388 57.5
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 1.9e-108 396.7 379 55.4
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 2.5e-108 396.4 393 56.7
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 3.3e-108 396.0 391 55.2
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 4.3e-108 395.6 288 69.1
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 5.6e-108 395.2 382 57.3
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 9.6e-108 394.4 368 57.6
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 1.3e-107 394.0 333 62.5
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 1.6e-107 393.7 383 55.9
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 2.8e-107 392.9 383 58.5
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 2.8e-107 392.9 368 59.0
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 8.1e-107 391.3 373 57.1
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 2.4e-106 389.8 376 54.5
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 2.9e-104 382.9 372 56.2
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 2.9e-104 382.9 373 56.0
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 3.8e-104 382.5 340 60.0
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 8.4e-104 381.3 288 66.7
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.1e-103 380.9 378 55.0
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 1.4e-103 380.6 332 60.8
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 1.3e-101 374.0 367 55.6
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 1.5e-100 370.5 288 67.7
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 1.5e-100 370.5 375 54.9
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 1.6e-99 367.1 366 56.8
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 4.8e-99 365.5 331 59.2
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 9.0e-98 361.3 352 58.2
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 9.0e-98 361.3 361 51.5
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 1.7e-96 357.1 351 55.0
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 5.0e-96 355.5 291 58.8
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 7.7e-89 331.6 351 51.6
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 1.7e-88 330.5 377 53.3
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 4.2e-87 325.9 283 60.1
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 3.9e-85 319.3 256 64.5
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 7.4e-84 315.1 392 46.4
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 1.5e-81 307.4 339 49.6
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 4.5e-81 305.8 288 57.6
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 2.5e-79 300.1 171 87.7
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 1.7e-75 287.3 160 88.8
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 1.6e-65 254.2 182 71.4
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 7.2e-55 218.8 291 39.9
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 4.0e-53 213.0 309 38.8
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 1.5e-52 211.1 202 59.9
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 2.3e-37 160.6 253 40.7
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 1.4e-29 134.8 129 61.2
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 1.1e-26 125.2 254 35.0
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 3.2e-18 97.1 156 40.4
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 4.1e-18 96.7 108 54.6
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 5.4e-18 96.3 64 75.0
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 1.2e-17 95.1 287 28.2
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 7.8e-17 92.4 73 60.3
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 8.4e-11 72.4 129 43.4


User provided reference genes

Program Settings