Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G01130 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 2.7e-18 94.4 49 100.0
BcaC01g04504 Brassica carinata HOM05D004818 ORTHO05D005444 4.4e-13 77.0 48 81.2
AL3G11130 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 1.7e-12 75.1 38 100.0
Carub.0003s0104 Capsella rubella HOM05D004818 ORTHO05D005444 2.2e-12 74.7 38 97.4
BcaC05g30384 Brassica carinata HOM05D004818 ORTHO05D005444 6.4e-12 73.2 38 94.7
A03p32690 Brassica napus HOM05D004818 ORTHO05D005444 6.4e-12 73.2 38 94.7
A05p44830 Brassica napus HOM05D004818 ORTHO05D005444 6.4e-12 73.2 38 94.7
C03p39790 Brassica napus HOM05D004818 ORTHO05D005444 6.4e-12 73.2 38 94.7
BolC3t16243H Brassica oleracea HOM05D004818 ORTHO05D005444 6.4e-12 73.2 38 94.7
BraA03t12437Z Brassica rapa HOM05D004818 ORTHO05D005444 6.4e-12 73.2 38 94.7
Sp3g00990 Schrenkiella parvula HOM05D004818 ORTHO05D005444 6.4e-12 73.2 38 94.7
Aa31LG5G12500 Aethionema arabicum HOM05D004818 ORTHO05D005444 1.4e-11 72.0 38 92.1
BcaC05g30492 Brassica carinata HOM05D004818 ORTHO05D005444 1.9e-11 71.6 38 92.1
BraA05t23174Z Brassica rapa HOM05D004818 ORTHO05D005444 1.9e-11 71.6 38 92.1
C09p75420 Brassica napus HOM05D004818 ORTHO05D005444 3.2e-11 70.9 38 92.1
BolC5t35118H Brassica oleracea HOM05D004818 ORTHO05D005444 5.4e-11 70.1 38 89.5
Thhalv10021899m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 5.4e-11 70.1 38 92.1
CARHR075920 Cardamine hirsuta HOM05D004818 ORTHO05D005444 1.2e-10 68.9 35 97.1
THA.LOC104821019 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 2.7e-10 67.8 38 89.5
FAN15G2220 Fragaria x ananassa HOM05D012912 ORTHO05D005444 7.8e-10 66.2 38 86.8
MELO3C003769.2 Cucumis melo HOM05D004818 ORTHO05D005444 1.0e-09 65.9 38 86.8
Sed0015314 Sechium edule HOM05D004818 ORTHO05D005444 1.0e-09 65.9 38 86.8
CsaV3_3G045680 Cucumis sativus L. HOM05D004818 ORTHO05D005444 1.3e-09 65.5 42 76.2
Sp6g28750 Schrenkiella parvula HOM05D004818 ORTHO05D005444 1.3e-09 65.5 38 84.2
Aa31LG11G14220 Aethionema arabicum HOM05D004818 ORTHO05D005444 1.7e-09 65.1 38 84.2
AL6G26200 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 1.7e-09 65.1 38 84.2
AT5G15320 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 1.7e-09 65.1 38 84.2
arahy.Tifrunner.gnm1.ann1.LS9ND1 Arachis hypogaea HOM05D004818 ORTHO05D005444 1.7e-09 65.1 48 68.8
Carub.0006s1351 Capsella rubella HOM05D004818 ORTHO05D005444 1.7e-09 65.1 38 84.2
FvH4_2g40204 Fragaria vesca HOM05D004818 ORTHO05D005444 1.7e-09 65.1 38 86.8
Manes.18G015600 Manihot esculenta HOM05D004818 ORTHO05D005444 1.7e-09 65.1 38 84.2
Lalb_Chr03g0025281 Lupinus albus HOM05D004818 ORTHO05D005444 2.3e-09 64.7 38 84.2
Oeu020676.1 Olea europaea HOM05D004818 ORTHO05D005444 2.3e-09 64.7 44 72.7
Ciclev10029771m.g Citrus clementina HOM05D004818 ORTHO05D005444 3.0e-09 64.3 38 84.2
Thhalv10015231m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 3.0e-09 64.3 38 81.6
FAN15G1739 Fragaria x ananassa HOM05D004818 ORTHO05D005444 3.0e-09 64.3 38 84.2
Gohir.A04G123300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 3.0e-09 64.3 38 84.2
CiPaw.05G074500 Carya illinoinensis HOM05D004818 ORTHO05D005444 3.9e-09 63.9 38 81.6
CiPaw.06G127200 Carya illinoinensis HOM05D004818 ORTHO05D005444 3.9e-09 63.9 38 81.6
Glyma.12G036000 Glycine max HOM05D004818 ORTHO05D005444 3.9e-09 63.9 38 84.2
Gohir.A12G040700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 3.9e-09 63.9 38 84.2
Prupe.8G082400 Prunus persica HOM05D004818 ORTHO05D005444 3.9e-09 63.9 38 84.2
Rhsim05G0067400 Rhododendron simsii HOM05D004818 ORTHO05D005444 3.9e-09 63.9 41 80.5
Sed0012644 Sechium edule HOM05D004818 ORTHO05D005444 3.9e-09 63.9 38 84.2
THA.LOC109116196 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 3.9e-09 63.9 38 81.6
Cfa005123 Carpinus fangiana HOM05D004818 ORTHO05D005444 5.0e-09 63.5 38 81.6
Duzib132G0136 Durio zibethinus HOM05D004818 ORTHO05D005444 5.0e-09 63.5 38 81.6
Duzib248G1544 Durio zibethinus HOM05D004818 ORTHO05D005444 5.0e-09 63.5 38 81.6
Atru.chr13.327 Acer truncatum HOM05D004818 ORTHO05D005444 6.6e-09 63.2 35 88.6
CSS0030409 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 6.6e-09 63.2 40 75.0
Ciclev10003088m.g Citrus clementina HOM05D004818 ORTHO05D005444 6.6e-09 63.2 38 81.6
COL.COLO4_10615 Corchorus olitorius HOM05D004818 ORTHO05D005444 6.6e-09 63.2 38 81.6
Medtr4g072130 Medicago truncatula HOM05D004818 ORTHO05D005444 6.6e-09 63.2 38 81.6
PGR142G0584 Punica granatum HOM05D004818 ORTHO05D005444 6.6e-09 63.2 38 81.6
Atru.chr5.3177 Acer truncatum HOM05D004818 ORTHO05D005444 8.6e-09 62.8 38 81.6
Lsat_1_v5_gn_4_67521 Lactuca sativa HOM05D004818 ORTHO05D005444 8.6e-09 62.8 38 78.9
Thecc.02G073200 Theobroma cacao HOM05D004818 ORTHO05D005444 8.6e-09 62.8 38 81.6
TAR381G0131 Trochodendron aralioides HOM05D004818 ORTHO05D005444 8.6e-09 62.8 38 81.6
TAR625G1092 Trochodendron aralioides HOM05D004818 ORTHO05D005444 8.6e-09 62.8 38 81.6
CANSAT11G1677 Cannabis sativa HOM05D004818 ORTHO05D005444 1.1e-08 62.4 38 78.9
ClCG05G018500 Citrullus lanatus HOM05D004818 ORTHO05D005444 1.1e-08 62.4 38 81.6
Gohir.D04G165300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.1e-08 62.4 38 81.6
MD10G1061700 Malus domestica HOM05D004818 ORTHO05D005444 1.1e-08 62.4 38 81.6
Manes.11G092164 Manihot esculenta HOM05D004818 ORTHO05D005444 1.1e-08 62.4 38 76.3
Prupe.1G368600 Prunus persica HOM05D004818 ORTHO05D005444 1.1e-08 62.4 38 78.9
BcaB08g36904 Brassica carinata HOM05D004818 ORTHO05D005444 1.5e-08 62.0 41 73.2
FvH4_2g40200 Fragaria vesca HOM05D004818 ORTHO05D005444 1.5e-08 62.0 37 83.8
HanXRQChr17g0551041 Helianthus annuus HOM05D004818 ORTHO05D005444 1.5e-08 62.0 38 78.9
MD00G1066700 Malus domestica HOM05D004818 ORTHO05D005444 1.5e-08 62.0 38 78.9
Phvul.011G038100 Phaseolus vulgaris HOM05D004818 ORTHO05D005444 1.5e-08 62.0 38 81.6
Potri.004G164066 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.5e-08 62.0 38 78.9
Potri.009G125832 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.5e-08 62.0 38 78.9
PGR042G0239 Punica granatum HOM05D004818 ORTHO05D005444 1.5e-08 62.0 38 81.6
RcHm_v2.0_Chr6g0268521 Rosa chinensis HOM05D004818 ORTHO05D005444 1.5e-08 62.0 38 81.6
A03p07110 Brassica napus HOM05D004818 ORTHO05D005444 1.9e-08 61.6 41 73.2
C03p08100 Brassica napus HOM05D004818 ORTHO05D005444 1.9e-08 61.6 41 73.2
BolC3t13307H Brassica oleracea HOM05D004818 ORTHO05D005444 1.9e-08 61.6 41 73.2
BraA03t10033Z Brassica rapa HOM05D004818 ORTHO05D005444 1.9e-08 61.6 41 73.2
CiPaw.09G132900 Carya illinoinensis HOM05D004818 ORTHO05D005444 1.9e-08 61.6 38 78.9
Ca_09579_v3 Cicer arietinum L. HOM05D004818 ORTHO05D005444 1.9e-08 61.6 38 78.9
Gohir.A13G086700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.9e-08 61.6 38 81.6
Nn5g29275 Nelumbo nucifera HOM05D004818 ORTHO05D005444 1.9e-08 61.6 38 78.9
Nn6g32305 Nelumbo nucifera HOM05D004818 ORTHO05D005444 2.5e-08 61.2 38 78.9
RcHm_v2.0_Chr6g0302511 Rosa chinensis HOM05D004818 ORTHO05D005444 2.5e-08 61.2 38 78.9
CARHR197990 Cardamine hirsuta HOM05D004818 ORTHO05D005444 3.3e-08 60.8 38 78.9
Eucgr.G01742 Eucalyptus grandis HOM05D004818 ORTHO05D005444 3.3e-08 60.8 38 76.3
Gohir.D13G090600 Gossypium hirsutum HOM05D004818 ORTHO05D005444 3.3e-08 60.8 38 81.6
Gorai.001G244100 Gossypium raimondii HOM05D004818 ORTHO05D005444 3.3e-08 60.8 38 81.6
Lalb_Chr19g0139031 Lupinus albus HOM05D004818 ORTHO05D005444 3.3e-08 60.8 38 81.6
Manes.04G082300 Manihot esculenta HOM05D004818 ORTHO05D005444 3.3e-08 60.8 38 76.3
TWI79G1427 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 3.3e-08 60.8 38 76.3
VMungo1127G0843 Vigna mungo HOM05D004818 ORTHO05D005444 3.3e-08 60.8 38 78.9
Lsat_1_v5_gn_8_127140 Lactuca sativa HOM05D004818 ORTHO05D005444 4.3e-08 60.5 38 76.3
Potri.002G024900 Populus trichocarpa HOM05D004818 ORTHO05D005444 4.3e-08 60.5 38 76.3
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 4.3e-08 60.5 38 76.3
Sabra09G0096800 Salix brachista HOM05D004818 ORTHO05D005444 4.3e-08 60.5 38 76.3
GSVIVG01009863001 Vitis vinifera HOM05D004818 ORTHO05D005444 4.3e-08 60.5 38 76.3
CSS0029185 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 5.6e-08 60.1 42 66.7
vmacro17409 Vaccinium macrocarpon HOM05D004818 ORTHO05D005444 5.6e-08 60.1 38 81.6
BcaB08g36903 Brassica carinata HOM05D004818 ORTHO05D005444 7.3e-08 59.7 41 70.7
BcaC04g18956 Brassica carinata HOM05D004818 ORTHO05D005444 7.3e-08 59.7 41 70.7
C09p61780 Brassica napus HOM05D004818 ORTHO05D005444 7.3e-08 59.7 41 70.7
BolC9t59016H Brassica oleracea HOM05D004818 ORTHO05D005444 7.3e-08 59.7 41 70.7
Eucgr.I01336 Eucalyptus grandis HOM05D004818 ORTHO05D005444 7.3e-08 59.7 38 78.9
CAN.G1329.6 Capsicum annuum HOM05D004818 ORTHO05D005444 9.5e-08 59.3 38 78.9
FAN20G1549 Fragaria x ananassa HOM05D004818 ORTHO05D005444 9.5e-08 59.3 38 76.3
Lj3g0020574 Lotus japonicus HOM05D004818 ORTHO05D005444 9.5e-08 59.3 38 76.3
TAR628G1422 Trochodendron aralioides HOM05D004818 ORTHO05D005444 9.5e-08 59.3 38 78.9
A10p23550 Brassica napus HOM05D004818 ORTHO05D005444 1.2e-07 58.9 41 68.3
BraA10t44421Z Brassica rapa HOM05D004818 ORTHO05D005444 1.2e-07 58.9 41 68.3
Cc09_g06640 Coffea canephora HOM05D000190 ORTHO05D005444 1.2e-07 58.9 40 72.5
Lalb_Chr01g0002101 Lupinus albus HOM05D004818 ORTHO05D005444 1.2e-07 58.9 38 76.3
Rhsim11G0184800 Rhododendron simsii HOM05D004818 ORTHO05D005444 1.2e-07 58.9 38 78.9
TWI75G0908 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 1.2e-07 58.9 38 73.7
Duzib052G0912 Durio zibethinus HOM05D004818 ORTHO05D005444 1.6e-07 58.5 38 76.3
TWI31G1300 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 1.6e-07 58.5 38 73.7
MELO3C013404.2 Cucumis melo HOM05D004818 ORTHO05D005444 2.1e-07 58.2 38 76.3
CsaV3_7G000550 Cucumis sativus L. HOM05D004818 ORTHO05D005444 2.1e-07 58.2 38 76.3
Sed0018748 Sechium edule HOM05D004818 ORTHO05D005444 2.1e-07 58.2 38 76.3
Gohir.D12G031701 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.8e-07 57.8 38 76.3
Cpa.g.sc150.3 Carica papaya HOM05D004818 ORTHO05D005444 3.6e-07 57.4 38 76.3
SalBow6G3605 Salvia bowleyana HOM05D004818 ORTHO05D005444 3.6e-07 57.4 47 59.6
ClCG02G004430 Citrullus lanatus HOM05D004818 ORTHO05D005444 4.7e-07 57.0 35 80.0
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 4.7e-07 57.0 38 73.7
Peaxi162Scf00538g00229 Petunia axillaris HOM05D004818 ORTHO05D005444 4.7e-07 57.0 37 81.1
Sc18g0005450 Simmondsia chinensis HOM05D004818 ORTHO05D005444 4.7e-07 57.0 38 76.3
Peaxi162Scf00362g01160 Petunia axillaris HOM05D004818 ORTHO05D005444 6.2e-07 56.6 38 76.3
Solyc01g110540.3 Solanum lycopersicum HOM05D004818 ORTHO05D005444 6.2e-07 56.6 38 76.3
PGSC0003DMG400001656 Solanum tuberosum HOM05D004818 ORTHO05D005444 6.2e-07 56.6 38 76.3
SalBow3G2817 Salvia bowleyana HOM05D004818 ORTHO05D005444 8.1e-07 56.2 38 73.7
Sed0003347 Sechium edule HOM05D004818 ORTHO05D005444 8.1e-07 56.2 38 73.7
Atru.chr10.813 Acer truncatum HOM05D004818 ORTHO05D005444 1.4e-06 55.5 35 80.0
AL1G54010 Arabidopsis lyrata HOM05D021271 ORTHO05D019714 1.4e-06 55.5 32 93.8
AL3G42600 Arabidopsis lyrata HOM05D021271 ORTHO05D005444 1.4e-06 55.5 32 93.8
Potri.005G236500 Populus trichocarpa HOM05D004818 ORTHO05D005444 2.3e-06 54.7 38 71.1
AUR62010366 Chenopodium quinoa HOM05D004818 ORTHO05D005444 4.0e-06 53.9 34 79.4
Nitab4.5_0002096g0010 Nicotiana tabacum HOM05D004818 ORTHO05D005444 4.0e-06 53.9 35 77.1
PGSC0003DMG400004424 Solanum tuberosum HOM05D004818 ORTHO05D005444 4.0e-06 53.9 38 73.7
THA.LOC104805479 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 4.0e-06 53.9 38 73.7
Aqoxy5G01447 Aquilegia oxysepala HOM05D004818 ORTHO05D005444 5.2e-06 53.5 35 77.1
Migut.B00126 Erythranthe guttata HOM05D004818 ORTHO05D005444 5.2e-06 53.5 38 65.8
Zm00001eb078460 Zea mays HOM05D004818 ORTHO05D005444 5.2e-06 53.5 34 76.5
CAN.G104.4 Capsicum annuum HOM05D004818 ORTHO05D005444 6.8e-06 53.1 38 76.3
Migut.N01294 Erythranthe guttata HOM05D004818 ORTHO05D005444 8.9e-06 52.8 38 71.1
PSO541G2816 Papaver somniferum HOM05D004818 ORTHO05D005444 8.9e-06 52.8 38 71.1


User provided reference genes

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