Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G01060 Arabidopsis thaliana HOM05D005960 ORTHO05D007537 7.9e-266 919.8 456 100.0
AL3G11200 Arabidopsis lyrata HOM05D005960 ORTHO05D007537 3.0e-257 891.3 456 96.3
Thhalv10020707m.g Eutrema salsugineum HOM05D005960 ORTHO05D007537 9.1e-254 879.8 456 95.0
Carub.0003s0111 Capsella rubella HOM05D005960 ORTHO05D007537 1.5e-251 872.5 457 94.1
Sp3g01070 Schrenkiella parvula HOM05D005960 ORTHO05D007537 1.8e-249 865.5 456 93.2
CARHR076010 Cardamine hirsuta HOM05D005960 ORTHO05D007537 8.8e-249 863.2 456 93.2
BraA01t04634Z Brassica rapa HOM05D005960 ORTHO05D007537 1.3e-239 832.8 458 90.6
BNapus_Darmor_BZH_scaffold_113p00110 Brassica napus HOM05D005960 ORTHO05D007537 2.8e-239 831.6 458 90.4
BNapus_Darmor_BZH_scaffold_97p00050 Brassica napus HOM05D005960 ORTHO05D007537 1.4e-238 829.3 457 90.2
Aa31LG5G12560 Aethionema arabicum HOM05D005960 ORTHO05D007537 2.4e-238 828.6 456 89.3
BolC1t05923H Brassica oleracea HOM05D005960 ORTHO05D007537 9.2e-238 826.6 457 89.7
THA.LOC104802965 Tarenaya hassleriana HOM05D005960 ORTHO05D007537 2.1e-226 788.9 456 86.0
BcaC09g47681 Brassica carinata HOM05D005960 ORTHO05D007537 2.0e-221 772.3 457 85.3
PGR004G2687 Punica granatum HOM05D005960 ORTHO05D007537 7.3e-211 737.3 457 80.7
Atru.chr8.386 Acer truncatum HOM05D005960 ORTHO05D007537 1.1e-209 733.4 455 81.1
Eucgr.I01985 Eucalyptus grandis HOM05D005960 ORTHO05D007537 2.6e-208 728.8 456 79.4
CsaV3_5G038400 Cucumis sativus L. HOM05D005960 ORTHO05D007537 3.4e-208 728.4 452 80.5
Manes.01G099100 Manihot esculenta HOM05D005960 ORTHO05D007537 1.3e-207 726.5 450 79.6
Cfa007624 Carpinus fangiana HOM05D005960 ORTHO05D007537 2.2e-207 725.7 446 81.4
QL02p039732 Quercus lobata HOM05D005960 ORTHO05D007537 2.2e-207 725.7 456 79.8
QL02p039477 Quercus lobata HOM05D005960 ORTHO05D007537 2.9e-207 725.3 456 79.6
TAR371G0518 Trochodendron aralioides HOM05D005960 ORTHO05D007537 3.8e-207 724.9 456 79.8
GSVIVG01011490001 Vitis vinifera HOM05D005960 ORTHO05D007537 8.4e-207 723.8 455 80.0
Hma1.2p1_3044F.1_g332080 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 1.1e-206 723.4 452 80.1
Actinidia01975 Actinidia chinensis HOM05D005960 ORTHO05D007537 1.4e-206 723.0 458 79.9
TWI60G0302 Tripterygium wilfordii HOM05D005960 ORTHO05D007537 1.9e-206 722.6 455 80.9
MBI16_g15532_MAGBIO Magnolia biondii HOM05D005960 ORTHO05D007537 3.2e-206 721.8 458 79.5
CSS0005506 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 5.4e-206 721.1 454 79.7
Cpa.g.sc14.144 Carica papaya HOM05D005960 ORTHO05D007537 5.4e-206 721.1 459 79.1
CSS0003743 Camellia sinensis var. sinensis HOM05D005960 ORTHO05D007537 7.1e-206 720.7 454 79.5
MELO3C022021.2 Cucumis melo HOM05D005960 ORTHO05D007537 7.1e-206 720.7 452 79.4
MD17G1056600 Malus domestica HOM05D005960 ORTHO05D007537 1.2e-205 719.9 458 79.7
Potri.017G090100 Populus trichocarpa HOM05D005960 ORTHO05D007537 1.2e-205 719.9 455 78.7
ClCG11G004630 Citrullus lanatus HOM05D005960 ORTHO05D007537 2.1e-205 719.2 452 79.2
COL.COLO4_21375 Corchorus olitorius HOM05D005960 ORTHO05D007537 2.1e-205 719.2 455 78.7
HanXRQChr14g0448721 Helianthus annuus HOM05D005960 ORTHO05D007537 2.1e-205 719.2 458 79.3
vmacro05665 Vaccinium macrocarpon HOM05D005960 ORTHO05D007537 6.0e-205 717.6 454 78.0
RcHm_v2.0_Chr2g0166541 Rosa chinensis HOM05D005960 ORTHO05D007537 1.3e-204 716.5 457 78.8
FAN05G2671 Fragaria x ananassa HOM05D005960 ORTHO05D007537 3.9e-204 714.9 457 78.3
FvH4_6g47510 Fragaria vesca HOM05D005960 ORTHO05D007537 5.1e-204 714.5 455 78.5
Rhsim10G0047200 Rhododendron simsii HOM05D005960 ORTHO05D007537 1.1e-203 713.4 475 76.4
Ciclev10011697m.g Citrus clementina HOM05D005960 ORTHO05D007537 1.9e-203 712.6 457 79.4
Thecc.04G090800 Theobroma cacao HOM05D005960 ORTHO05D007537 1.9e-203 712.6 456 78.1
CiPaw.04G058500 Carya illinoinensis HOM05D005960 ORTHO05D007537 2.5e-203 712.2 445 79.1
CANSAT64G2728 Cannabis sativa HOM05D005960 ORTHO05D007537 4.3e-203 711.4 456 78.7
AUR62042562 Chenopodium quinoa HOM05D005960 ORTHO05D007537 9.6e-203 710.3 460 78.0
Duzib147G1008 Durio zibethinus HOM05D005960 ORTHO05D007537 1.2e-202 709.9 455 77.8
Gohir.A11G071600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 1.2e-202 709.9 454 78.9
Gorai.007G081300 Gossypium raimondii HOM05D005960 ORTHO05D007537 1.6e-202 709.5 454 79.1
Rhsim10G0046600 Rhododendron simsii HOM05D005960 ORTHO05D007537 1.6e-202 709.5 405 84.7
Ca_04868_v3 Cicer arietinum L. HOM05D005960 ORTHO05D007537 3.6e-202 708.4 456 77.9
Oeu000854.1 Olea europaea HOM05D005960 ORTHO05D007537 4.7e-202 708.0 471 77.1
Sabra17G0079200 Salix brachista HOM05D005960 ORTHO05D007537 8.1e-202 707.2 471 76.0
Lj2g0023614 Lotus japonicus HOM05D005960 ORTHO05D007537 1.4e-201 706.4 455 78.2
Aqoxy3G00406 Aquilegia oxysepala HOM05D005960 ORTHO05D007537 4.0e-201 704.9 455 77.6
Sed0006667 Sechium edule HOM05D005960 ORTHO05D007537 4.0e-201 704.9 456 77.6
Glyma.13G059000 Glycine max HOM05D005960 ORTHO05D007537 2.0e-200 702.6 456 77.4
Glyma.19G027400 Glycine max HOM05D005960 ORTHO05D007537 2.6e-200 702.2 456 77.9
arahy.Tifrunner.gnm1.ann1.8N3EDT Arachis hypogaea HOM05D005960 ORTHO05D007537 3.4e-200 701.8 462 76.8
VMungo0464G0831 Vigna mungo HOM05D005960 ORTHO05D007537 4.4e-200 701.4 454 77.3
TPR.G26197 Trifolium pratense HOM05D005960 ORTHO05D007537 7.6e-200 700.7 456 77.6
EL10Ac2g03055 Beta vulgaris HOM05D005960 ORTHO05D007537 1.3e-199 699.9 444 78.2
CAN.G734.6 Capsicum annuum HOM05D005960 ORTHO05D007537 2.9e-199 698.7 404 83.9
arahy.Tifrunner.gnm1.ann1.7U9LX7 Arachis hypogaea HOM05D005960 ORTHO05D007537 3.8e-199 698.4 462 76.6
Solyc03g013240.4 Solanum lycopersicum HOM05D005960 ORTHO05D007537 3.8e-199 698.4 381 88.2
Sopen03g016610 Solanum pennellii HOM05D005960 ORTHO05D007537 3.8e-199 698.4 381 88.2
Psat1g068640 Pisum sativum HOM05D005960 ORTHO05D007537 8.4e-199 697.2 454 77.3
DCAR_005553 Daucus carota HOM05D005960 ORTHO05D007537 5.4e-198 694.5 442 79.9
Phvul.004G033300 Phaseolus vulgaris HOM05D005960 ORTHO05D007537 7.1e-198 694.1 456 77.2
Medtr6g013750 Medicago truncatula HOM05D005960 ORTHO05D007537 1.6e-197 693.0 455 77.1
ECA238G1943 Erigeron canadensis HOM05D005960 ORTHO05D007537 6.0e-197 691.0 432 78.9
Migut.H00653 Erythranthe guttata HOM05D005960 ORTHO05D007537 7.8e-197 690.6 460 75.9
PSO421G0059 Papaver somniferum HOM05D005960 ORTHO05D007537 1.0e-196 690.3 452 75.0
PSO013G0364 Papaver somniferum HOM05D005960 ORTHO05D007537 3.0e-196 688.7 455 74.1
Haze_14472 Corylus avellana HOM05D005960 ORTHO05D007537 2.5e-195 685.6 520 70.2
Lalb_Chr06g0175111 Lupinus albus HOM05D005960 ORTHO05D007537 5.6e-195 684.5 440 77.5
Os05g0512200 Oryza sativa ssp. japonica HOM05D005960 ORTHO05D007537 3.6e-194 681.8 402 82.6
Nn4g23343 Nelumbo nucifera HOM05D005960 ORTHO05D007537 8.4e-191 670.6 361 89.2
SalBow1G6551 Salvia bowleyana HOM05D005960 ORTHO05D007537 1.4e-190 669.8 469 74.0
ATR0111G015 Amborella trichopoda HOM05D005960 ORTHO05D007537 4.6e-189 664.8 453 73.1
Lsat_1_v5_gn_2_87860 Lactuca sativa HOM05D005960 ORTHO05D007537 3.9e-188 661.8 460 72.8
unitig_736.g22244 Utricularia gibba HOM05D005960 ORTHO05D007537 5.6e-187 657.9 385 82.9
Peaxi162Scf00451g00429 Petunia axillaris HOM05D005960 ORTHO05D007537 1.3e-186 656.8 385 84.2
FAN02G1813 Fragaria x ananassa HOM05D005960 ORTHO05D007537 6.9e-185 651.0 356 88.5
Nitab4.5_0001637g0110 Nicotiana tabacum HOM05D005960 ORTHO05D007537 5.8e-184 647.9 466 72.3
Sc10g0003290 Simmondsia chinensis HOM05D005960 ORTHO05D007537 7.1e-182 641.0 369 82.9
Lj4C116G4 Lonicera japonica HOM05D005960 ORTHO05D007537 3.7e-178 628.6 465 70.3
FAN14G4646 Fragaria x ananassa HOM05D005960 ORTHO05D007537 8.2e-178 627.5 455 71.2
Dinv33810 Davidia involucrata HOM05D005960 ORTHO05D007537 1.3e-175 620.2 451 72.7
SEGI_05647 Sequoiadendron giganteum HOM05D005960 ORTHO05D007537 1.6e-173 613.2 414 70.5
Prupe.3G258900 Prunus persica HOM05D005960 ORTHO05D007537 4.6e-173 611.7 331 90.0
Gohir.D11G075600 Gossypium hirsutum HOM05D005960 ORTHO05D007537 6.3e-170 601.3 331 88.2
Mapoly0015s0039 Marchantia polymorpha HOM05D005960 ORTHO05D007537 3.9e-164 582.0 414 68.4
Pp3c2_13280 Physcomitrium patens HOM05D005960 ORTHO05D007537 1.6e-162 576.6 383 71.8
SMO335G0027 Selaginella moellendorffii HOM05D005960 ORTHO05D007537 2.9e-159 565.8 430 64.9
Actinidia01967 Actinidia chinensis HOM05D005960 ORTHO05D007537 2.3e-156 556.2 383 75.2
Nitab4.5_0005196g0010 Nicotiana tabacum HOM05D005960 ORTHO05D007537 4.4e-155 552.0 464 64.4
AagrBONN_evm.TU.Sc2ySwM_362.2259 Anthoceros agrestis HOM05D005960 ORTHO05D007537 9.1e-153 544.3 393 67.2
AUR62018147 Chenopodium quinoa HOM05D005960 ORTHO05D007537 6.5e-151 538.1 362 75.4
Cc07_g03890 Coffea canephora HOM05D005960 ORTHO05D007537 1.2e-149 533.9 346 78.0
Zm00001eb292620 Zea mays HOM05D005960 ORTHO05D007537 2.6e-147 526.2 357 75.4
MSTRG.3021 Avicennia marina HOM05D005960 ORTHO05D007537 5.7e-139 498.4 278 86.7
CBR_g61504 Chara braunii HOM05D005960 ORTHO05D007537 3.5e-136 489.2 405 60.7
HPP92_018459 Vanilla planifolia HOM05D005960 ORTHO05D007537 3.5e-136 489.2 337 72.4
CDE04G1831 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 2.1e-125 453.4 364 65.4
Dinv11487 Davidia involucrata HOM05D005960 ORTHO05D007537 6.1e-125 451.8 317 73.2
CDE07G2056 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 1.0e-124 451.1 292 74.7
FAN09G3416 Fragaria x ananassa HOM05D005960 ORTHO05D007537 2.6e-123 446.4 404 60.4
Hma1.2p1_1813F.1_g303790 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 4.4e-123 445.7 235 88.9
Hma1.2p1_3044F.1_g332082 Hydrangea macrophylla HOM05D005960 ORTHO05D007537 4.4e-123 445.7 235 88.9
TAR627G0454 Trochodendron aralioides HOM05D005960 ORTHO05D007537 1.7e-122 443.7 331 69.5
Cre13.g562750 Chlamydomonas reinhardtii HOM05D005960 ORTHO05D007537 7.8e-112 408.3 409 50.1
MD09G1061300 Malus domestica HOM05D005960 ORTHO05D007537 1.9e-89 334.0 242 72.7
MCO03G230 Micromonas commoda HOM05D005960 ORTHO05D007537 1.3e-79 301.2 321 48.0
MCO05G128 Micromonas commoda HOM05D005960 ORTHO05D007537 3.5e-64 250.0 364 40.1
PRCOL_00002980 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 1.0e-58 231.9 402 36.3
PRCOL_00004151 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 3.7e-53 213.4 380 36.8
CDE07G0145 Ceratophyllum demersum HOM05D005960 ORTHO05D007537 1.3e-50 204.9 117 85.5
PRCOL_00003347 Prasinoderma coloniale HOM05D005960 ORTHO05D007537 7.2e-49 199.1 349 35.0
MCO08G069 Micromonas commoda HOM05D005960 ORTHO05D007537 6.1e-48 196.1 349 35.0
Cc07_g03900 Coffea canephora HOM05D005960 ORTHO05D007537 8.8e-47 192.2 104 88.5
MCO08G121 Micromonas commoda HOM05D005960 ORTHO05D007537 1.4e-44 184.9 363 32.2
AUR62018149 Chenopodium quinoa HOM05D005960 ORTHO05D007537 4.5e-43 179.9 99 87.9
TPR.G22619 Trifolium pratense HOM05D005960 ORTHO05D007537 8.8e-39 165.6 152 60.5
Potri.004G125301 Populus trichocarpa HOM05D005960 ORTHO05D007537 2.0e-38 164.5 149 57.7
EL10Ac2g03064 Beta vulgaris HOM05D005960 ORTHO05D007537 2.9e-34 150.6 96 79.2
Oeu061493.1 Olea europaea HOM05D005960 ORTHO05D007537 2.8e-21 107.5 51 90.2
PGSC0003DMG400033541 Solanum tuberosum HOM05D005960 ORTHO05D007537 2.6e-14 84.3 45 95.6
Zm00001eb030310 Zea mays HOM05D005960 ORTHO05D051632 2.1e-08 64.7 38 84.2
Zm00001eb250570 Zea mays HOM05D005960 ORTHO05D051632 4.7e-08 63.5 42 76.2
MCO08G023 Micromonas commoda HOM05D005960 ORTHO05D270145 8.0e-08 62.8 150 28.7


User provided reference genes

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