Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 2053.9 1099 100.0
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1952.9 1100 94.4
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1907.5 1041 92.9
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1863.6 1041 90.7
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1829.3 1046 89.3
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1824.7 1047 89.0
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1808.9 1041 87.8
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1800.0 1041 87.1
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1794.6 1043 87.0
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1788.1 1041 86.7
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1786.5 1053 86.1
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1786.2 1040 86.8
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1732.6 1057 84.5
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1711.4 952 91.8
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1587.8 1036 78.6
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1446.4 1049 69.9
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1437.9 1039 69.7
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1430.2 1044 68.8
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1422.9 1039 68.8
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1421.4 1031 69.7
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1419.1 1039 68.5
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1418.7 1039 68.7
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1410.2 1039 68.4
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1406.0 1040 67.9
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1402.5 1042 67.1
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1395.9 1040 66.7
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1392.9 1038 66.5
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1392.9 1003 70.3
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1391.3 997 69.0
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1387.1 1042 67.0
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1382.5 1040 66.8
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1374.0 1048 66.1
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1368.2 1029 66.5
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1363.6 1039 66.2
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1362.4 1039 65.4
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1361.3 1038 66.3
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1354.7 1041 66.5
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1351.3 1041 65.4
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1349.7 1044 65.0
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1336.2 1056 64.5
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1335.5 1032 64.8
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1331.6 1041 64.2
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1328.5 1044 63.2
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1322.4 1041 64.8
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1321.6 1076 63.5
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1320.4 919 71.5
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1317.8 1054 63.5
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1310.0 1042 63.7
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1308.5 1036 64.2
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1308.1 1083 62.6
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1305.4 1041 63.4
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1298.9 1044 63.4
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1297.3 1032 63.5
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1293.5 1031 62.8
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1288.1 1035 62.0
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1288.1 1053 62.2
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1287.7 1038 63.5
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1287.3 1053 62.2
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1287.3 1031 62.6
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1284.2 1146 58.0
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1282.7 1040 63.0
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1281.9 1033 62.5
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1281.9 1043 61.9
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1280.8 1044 63.0
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1280.4 1052 62.2
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1278.5 1053 62.1
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1276.5 1043 62.3
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1275.8 1047 61.6
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1275.0 1050 61.8
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1272.3 1053 62.0
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1270.4 1037 62.9
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 1269.2 1031 62.5
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1269.2 1057 60.8
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1267.3 1035 64.1
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1266.1 1040 61.2
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1265.0 1051 62.1
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1265.0 1034 63.1
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1255.4 1052 61.2
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1255.0 1039 62.0
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1251.9 1042 61.1
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1247.6 1035 60.6
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1245.7 1038 62.4
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1238.8 1027 61.4
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1237.2 993 61.7
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1232.6 1042 61.1
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1231.1 992 61.6
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1230.3 1035 60.7
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1199.5 991 60.9
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1199.1 1044 60.0
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1195.3 1037 60.0
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1194.9 1030 59.2
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1189.9 1004 59.3
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1185.6 828 70.5
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1173.3 999 60.2
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1172.5 1276 50.2
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1167.9 1018 59.1
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1166.8 1015 59.4
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1160.2 1028 58.0
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1123.6 836 66.3
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1122.1 1042 55.4
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1120.9 1045 54.8
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 8.2e-309 1063.9 1030 55.0
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 1.3e-306 1056.6 1052 55.3
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 8.0e-304 1047.3 869 62.6
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 1.3e-293 1013.4 748 66.3
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 6.5e-290 1001.1 677 72.8
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 5.5e-289 998.0 956 54.3
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 8.0e-288 994.2 1028 52.1
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 7.2e-281 971.1 1004 50.2
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 5.8e-270 934.9 783 61.0
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 1.6e-264 916.8 996 47.7
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 4.9e-261 905.2 966 48.7
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 6.0e-251 871.7 1006 46.7
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 7.6e-222 775.0 640 62.3
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 6.3e-208 728.8 467 75.2
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 6.3e-208 728.8 467 75.2
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 8.8e-194 681.8 574 60.6
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 1.3e-192 677.9 1036 38.8
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 8.3e-144 515.8 315 79.0
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 1.4e-95 355.5 410 49.0
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 3.6e-62 244.6 1038 24.1
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 5.2e-61 240.7 202 59.9
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 5.2e-53 214.2 143 69.9
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 4.5e-49 201.1 164 62.8
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 6.8e-45 187.2 172 59.9
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 1.8e-37 162.5 620 23.5
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.8e-37 162.5 177 50.8
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 5.2e-37 161.0 204 45.6
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 1.4e-34 152.9 354 30.5
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 8.6e-32 143.7 154 50.0
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 4.7e-30 137.9 167 47.9
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.1e-26 126.7 121 57.0
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 2.4e-26 125.6 135 48.9
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 1.3e-19 103.2 98 52.0
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 3.7e-19 101.7 248 27.8
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.3e-16 92.4 103 44.7
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 1.1e-13 83.6 74 60.8
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 2.0e-12 79.3 302 26.8
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 1.3e-11 76.6 68 57.4
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 3.9e-08 65.1 123 36.6
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 5.6e-07 61.2 56 41.1
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 1.6e-06 59.7 39 64.1


User provided reference genes

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