Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G47960 Arabidopsis thaliana HOM05D006332 ORTHO05D008421 8.0e-255 883.2 443 100.0
AL4G47550 Arabidopsis lyrata HOM05D006332 ORTHO05D008421 4.7e-247 857.4 434 98.4
Carub.0004s3069 Capsella rubella HOM05D006332 ORTHO05D008421 5.0e-241 837.4 445 95.3
Sp4g29880 Schrenkiella parvula HOM05D006332 ORTHO05D008421 1.6e-234 815.8 444 92.3
Thhalv10018568m.g Eutrema salsugineum HOM05D006332 ORTHO05D008421 4.7e-231 804.3 443 92.1
BcaC02g12534 Brassica carinata HOM05D006332 ORTHO05D008421 1.8e-230 802.4 436 91.7
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 2.4e-227 792.0 429 91.8
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 2.4e-227 792.0 429 91.8
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 7.3e-224 780.4 429 90.4
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 7.3e-224 780.4 429 90.4
BcaB02g08727 Brassica carinata HOM05D006332 ORTHO05D008421 2.8e-223 778.5 440 89.5
THA.LOC104817534 Tarenaya hassleriana HOM05D006332 ORTHO05D008421 1.0e-209 733.4 446 84.1
CARHR143350 Cardamine hirsuta HOM05D006332 ORTHO05D008421 2.1e-207 725.7 391 93.6
Aa31LG1G29380 Aethionema arabicum HOM05D006332 ORTHO05D008421 1.2e-205 719.9 443 84.0
Cpa.g.sc27.66 Carica papaya HOM05D006332 ORTHO05D008421 1.9e-179 632.9 441 73.2
Thecc.06G190700 Theobroma cacao HOM05D006332 ORTHO05D008421 6.1e-178 627.9 449 70.6
Gohir.D06G130900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 2.3e-177 625.9 446 70.4
Dinv07538 Davidia involucrata HOM05D006332 ORTHO05D008421 5.1e-177 624.8 447 71.6
Duzib235G1125 Durio zibethinus HOM05D006332 ORTHO05D008421 5.7e-176 621.3 444 70.7
Gohir.A06G126100 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.1e-174 617.1 446 69.5
TAR629G2846 Trochodendron aralioides HOM05D006332 ORTHO05D008421 1.4e-174 616.7 438 70.1
CiPaw.09G057500 Carya illinoinensis HOM05D006332 ORTHO05D008421 3.1e-174 615.5 442 70.8
COL.COLO4_31500 Corchorus olitorius HOM05D006332 ORTHO05D008421 6.9e-174 614.4 469 68.7
Actinidia01892 Actinidia chinensis HOM05D006332 ORTHO05D008421 1.2e-173 613.6 436 71.6
Prupe.4G044000 Prunus persica HOM05D006332 ORTHO05D008421 1.2e-173 613.6 440 70.7
GSVIVG01002030001 Vitis vinifera HOM05D006332 ORTHO05D008421 1.2e-173 613.6 445 70.3
Lj4g0020818 Lotus japonicus HOM05D006332 ORTHO05D008421 3.4e-173 612.1 432 70.4
Phvul.002G227700 Phaseolus vulgaris HOM05D006332 ORTHO05D008421 5.9e-173 611.3 434 70.7
Duzib160G0593 Durio zibethinus HOM05D006332 ORTHO05D008421 6.5e-172 607.8 441 70.1
Ca_18532_v3 Cicer arietinum L. HOM05D006332 ORTHO05D008421 1.4e-171 606.7 436 70.2
Glyma.13G181100 Glycine max HOM05D006332 ORTHO05D008421 1.9e-171 606.3 439 69.9
FAN16G1437 Fragaria x ananassa HOM05D006332 ORTHO05D008421 2.5e-171 605.9 448 69.0
Lj1C1207T6 Lonicera japonica HOM05D006332 ORTHO05D008421 9.4e-171 604.0 429 70.2
TPR.G12057 Trifolium pratense HOM05D006332 ORTHO05D008421 1.2e-170 603.6 435 71.0
Cc02_g13080 Coffea canephora HOM05D006332 ORTHO05D008421 1.6e-170 603.2 438 68.9
Haze_06500 Corylus avellana HOM05D006332 ORTHO05D008421 2.7e-170 602.4 442 69.2
PGSC0003DMG400022831 Solanum tuberosum HOM05D006332 ORTHO05D008421 4.7e-170 601.7 449 68.2
Gorai.010G152800 Gossypium raimondii HOM05D006332 ORTHO05D008421 6.1e-170 601.3 431 70.3
RcHm_v2.0_Chr5g0008031 Rosa chinensis HOM05D006332 ORTHO05D008421 7.9e-170 600.9 445 68.5
FvH4_3g04870 Fragaria vesca HOM05D006332 ORTHO05D008421 2.3e-169 599.4 441 68.7
Medtr4g088960 Medicago truncatula HOM05D006332 ORTHO05D008421 3.0e-169 599.0 432 69.9
Solyc10g008990.4 Solanum lycopersicum HOM05D006332 ORTHO05D008421 5.1e-169 598.2 446 67.7
Psat7g112800 Pisum sativum HOM05D006332 ORTHO05D008421 6.7e-169 597.8 434 70.3
MD10G1296600 Malus domestica HOM05D006332 ORTHO05D008421 1.1e-168 597.0 453 67.5
VMungo0251G1219 Vigna mungo HOM05D006332 ORTHO05D008421 1.1e-168 597.0 428 69.9
QL05p039635 Quercus lobata HOM05D006332 ORTHO05D008421 1.5e-168 596.7 448 68.3
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 4.4e-168 595.1 432 69.0
Lalb_Chr16g0383661 Lupinus albus HOM05D006332 ORTHO05D008421 7.4e-168 594.3 436 67.9
Manes.16G025600 Manihot esculenta HOM05D006332 ORTHO05D008421 9.7e-168 594.0 442 69.2
TWI38G1702 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 1.3e-167 593.6 445 69.0
Eucgr.D00641 Eucalyptus grandis HOM05D006332 ORTHO05D008421 1.7e-167 593.2 437 68.4
PGR004G2698 Punica granatum HOM05D006332 ORTHO05D008421 1.7e-167 593.2 442 67.4
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 4.8e-167 591.7 441 68.5
arahy.Tifrunner.gnm1.ann1.5TP18E Arachis hypogaea HOM05D006332 ORTHO05D008421 1.8e-166 589.7 432 67.4
MELO3C002589.2 Cucumis melo HOM05D006332 ORTHO05D008421 1.8e-166 589.7 442 67.2
Glyma.07G195200 Glycine max HOM05D006332 ORTHO05D008421 2.4e-166 589.3 436 69.0
arahy.Tifrunner.gnm1.ann1.I941VF Arachis hypogaea HOM05D006332 ORTHO05D008421 3.1e-166 589.0 428 68.2
CANSAT35G2021 Cannabis sativa HOM05D006332 ORTHO05D008421 3.1e-166 589.0 439 68.3
Hma1.2p1_0881F.1_g231970 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 5.3e-166 588.2 432 69.7
Potri.004G040500 Populus trichocarpa HOM05D006332 ORTHO05D008421 7.0e-166 587.8 434 69.6
MD05G1316100 Malus domestica HOM05D006332 ORTHO05D008421 3.5e-165 585.5 444 66.2
CsaV3_1G012160 Cucumis sativus L. HOM05D006332 ORTHO05D008421 4.5e-165 585.1 442 66.5
CSS0022240 Camellia sinensis var. sinensis HOM05D006332 ORTHO05D008421 7.7e-165 584.3 445 69.0
ClCG03G005920 Citrullus lanatus HOM05D006332 ORTHO05D008421 1.3e-164 583.6 432 67.8
Sed0003237 Sechium edule HOM05D006332 ORTHO05D008421 2.2e-164 582.8 437 67.3
Gohir.A10G024200 Gossypium hirsutum HOM05D006332 ORTHO05D008421 5.0e-164 581.6 442 66.1
Oeu053924.1 Olea europaea HOM05D006332 ORTHO05D008421 1.4e-163 580.1 445 67.2
MSTRG.13186 Avicennia marina HOM05D006332 ORTHO05D008421 4.2e-163 578.6 446 68.2
TWI63G1670 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 4.7e-162 575.1 456 66.0
Gorai.011G026200 Gossypium raimondii HOM05D006332 ORTHO05D008421 1.0e-161 573.9 436 66.1
PSO063G3883 Papaver somniferum HOM05D006332 ORTHO05D008421 1.8e-161 573.2 448 64.5
Gohir.D10G024900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 2.3e-161 572.8 436 67.0
HanXRQChr04g0124141 Helianthus annuus HOM05D006332 ORTHO05D008421 6.7e-161 571.2 444 65.3
Migut.H01511 Erythranthe guttata HOM05D006332 ORTHO05D008421 3.3e-160 568.9 437 66.4
Aqoxy1G02544 Aquilegia oxysepala HOM05D006332 ORTHO05D008421 4.4e-160 568.5 437 64.3
PSO782G1256 Papaver somniferum HOM05D006332 ORTHO05D008421 1.7e-159 566.6 448 64.1
Nitab4.5_0003942g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 5.3e-158 561.6 448 66.1
Peaxi162Scf00530g00823 Petunia axillaris HOM05D006332 ORTHO05D008421 7.7e-157 557.8 445 65.2
CDE08G0172 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 1.0e-156 557.4 437 64.8
Nn6g34413 Nelumbo nucifera HOM05D006332 ORTHO05D008421 1.3e-156 557.0 440 62.7
ATR0680G340 Amborella trichopoda HOM05D006332 ORTHO05D008421 2.2e-156 556.2 437 64.8
EL10Ac8g20347 Beta vulgaris HOM05D006332 ORTHO05D008421 6.5e-156 554.7 426 66.9
HPP92_001753 Vanilla planifolia HOM05D006332 ORTHO05D008421 2.1e-154 549.7 453 62.9
ECA248G3961 Erigeron canadensis HOM05D006332 ORTHO05D008421 1.4e-153 547.0 436 62.8
HanXRQChr01g0003951 Helianthus annuus HOM05D006332 ORTHO05D008421 4.0e-153 545.4 430 62.6
ECA236G3091 Erigeron canadensis HOM05D006332 ORTHO05D008421 5.2e-153 545.0 439 63.8
AUR62016979 Chenopodium quinoa HOM05D006332 ORTHO05D008421 1.2e-152 543.9 446 64.1
Zm00001eb044550 Zea mays HOM05D006332 ORTHO05D008421 3.7e-151 538.9 441 63.3
Sabra04G0025000 Salix brachista HOM05D006332 ORTHO05D008421 1.4e-150 537.0 491 60.9
Ciclev10015324m.g Citrus clementina HOM05D006332 ORTHO05D008421 1.2e-149 533.9 448 62.9
AUR62014792 Chenopodium quinoa HOM05D006332 ORTHO05D008421 3.8e-148 528.9 462 62.1
Hma1.2p1_0126F.1_g059220 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 1.3e-143 513.8 450 60.7
Nn1g04020 Nelumbo nucifera HOM05D006332 ORTHO05D008421 1.6e-141 506.9 365 69.6
Lsat_1_v5_gn_7_19001 Lactuca sativa HOM05D006332 ORTHO05D008421 3.3e-139 499.2 437 61.1
MBI17_g03748_MAGBIO Magnolia biondii HOM05D006332 ORTHO05D008421 1.8e-137 493.4 432 60.6
SGA_v2.0_scaffold49G18281 Striga asiatica HOM05D006332 ORTHO05D008421 2.0e-136 490.0 449 59.5
Cfa000416 Carpinus fangiana HOM05D006332 ORTHO05D008421 1.7e-132 476.9 340 69.7
DCAR_004087 Daucus carota HOM05D006332 ORTHO05D008421 3.3e-131 472.6 356 67.1
Hma1.2p1_0881F.1_g231960 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 6.1e-130 468.4 338 70.7
Lsat_1_v5_gn_1_127821 Lactuca sativa HOM05D006332 ORTHO05D008421 1.3e-127 460.7 441 54.9
Mapoly0122s0006 Marchantia polymorpha HOM05D006332 ORTHO05D008421 1.2e-125 454.1 439 50.6
AagrBONN_evm.TU.Sc2ySwM_344.1820 Anthoceros agrestis HOM05D006332 ORTHO05D008421 4.6e-125 452.2 432 53.0
Pp3c1_28670 Physcomitrium patens HOM05D006332 ORTHO05D008421 3.0e-124 449.5 433 52.0
Hund21245 Selenicereus undatus HOM05D006332 ORTHO05D008421 1.5e-123 447.2 438 56.4
Duzib192G0908 Durio zibethinus HOM05D006332 ORTHO05D008421 4.3e-123 445.7 357 66.9
unitig_8.g3355 Utricularia gibba HOM05D006332 ORTHO05D008421 4.7e-122 442.2 444 55.2
Nitab4.5_0009738g0010 Nicotiana tabacum HOM05D006332 ORTHO05D008421 6.2e-122 441.8 360 64.7
SMO364G0571 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 8.6e-116 421.4 432 50.5
CAN.G413.15 Capsicum annuum HOM05D006332 ORTHO05D008421 1.8e-113 413.7 330 63.6
Atru.chr10.1934 Acer truncatum HOM05D006332 ORTHO05D008421 4.1e-110 402.5 286 71.7
Sc24g0000810 Simmondsia chinensis HOM05D006332 ORTHO05D008421 1.2e-109 401.0 606 40.8
CBR_g24248 Chara braunii HOM05D006332 ORTHO05D008421 4.3e-91 339.3 448 42.4
SMO364G0067 Selaginella moellendorffii HOM05D006332 ORTHO05D008421 3.0e-84 316.6 314 51.0
Gohir.A10G024325 Gossypium hirsutum HOM05D006332 ORTHO05D008421 5.3e-81 305.8 207 73.9
SHI01800 Sapria himalayana HOM05D006332 ORTHO05D008421 5.5e-78 295.8 243 63.8
Nitab4.5_0009738g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 7.4e-67 258.8 237 57.0
Sopen10g004770 Solanum pennellii HOM05D006332 ORTHO05D008421 4.5e-64 249.6 217 56.7
Gohir.A10G024350 Gossypium hirsutum HOM05D006332 ORTHO05D008421 3.0e-44 183.7 154 59.1
PRCOL_00003805 Prasinoderma coloniale HOM05D006332 ORTHO05D008421 2.2e-42 177.6 400 33.2
SHI01798 Sapria himalayana HOM05D000002 ORTHO05D000001 4.8e-34 149.8 201 46.3
Atru.chr10.1933 Acer truncatum HOM05D006332 ORTHO05D008421 1.7e-31 141.4 119 55.5
Ciclev10009862m.g Citrus clementina HOM05D006332 ORTHO05D008421 4.5e-24 116.7 104 58.7
PSO017G7020 Papaver somniferum HOM05D006332 ORTHO05D000676 1.6e-21 108.2 113 44.2
PSO170G5489 Papaver somniferum HOM05D006332 ORTHO05D008421 3.0e-20 104.0 98 50.0
Nitab4.5_0009738g0030 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.1e-17 95.5 91 59.3
TPR.G24681 Trifolium pratense HOM05D006332 ORTHO05D001923 7.0e-17 92.8 59 71.2
Os10g0498800 Oryza sativa ssp. japonica HOM05D006332 ORTHO05D008421 2.9e-10 70.9 62 53.2
CDE02G4141 Ceratophyllum demersum HOM05D006332 ORTHO05D008421 8.3e-10 69.3 120 35.8
Cpa.g.sc777.3 Carica papaya HOM05D006332 ORTHO05D034078 1.1e-06 58.9 34 82.4
Haze_21185 Corylus avellana HOM05D000405 ORTHO05D000712 5.6e-06 56.6 32 81.2
TPR.G32042 Trifolium pratense HOM05D006332 ORTHO05D034078 5.6e-06 56.6 40 65.0


User provided reference genes

Program Settings