Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G46910 Arabidopsis thaliana HOM05D007122 ORTHO05D008918 2.2e-157 558.9 285 100.0
Sp4g28930 Schrenkiella parvula HOM05D007122 ORTHO05D008918 3.7e-144 515.0 285 90.5
Thhalv10001577m.g Eutrema salsugineum HOM05D007122 ORTHO05D008918 1.1e-143 513.5 285 90.9
Carub.0004s2963 Capsella rubella HOM05D007122 ORTHO05D008918 7.7e-142 507.3 285 91.9
A05p00930 Brassica napus HOM05D007122 ORTHO05D008918 6.5e-141 504.2 285 89.5
BraA05t19094Z Brassica rapa HOM05D007122 ORTHO05D008918 6.1e-139 497.7 286 88.5
CARHR142260 Cardamine hirsuta HOM05D007122 ORTHO05D008918 6.1e-139 497.7 285 89.1
BcaC02g12634 Brassica carinata HOM05D007122 ORTHO05D008918 3.0e-138 495.4 285 88.1
C04p01080 Brassica napus HOM05D006867 ORTHO05D008676 1.1e-137 493.4 286 88.5
Aa31LG1G28270 Aethionema arabicum HOM05D007122 ORTHO05D008918 5.9e-134 481.1 282 88.3
THA.LOC104802109 Tarenaya hassleriana HOM05D007122 ORTHO05D008918 2.1e-115 419.5 286 76.2
Cpa.g.sc57.60 Carica papaya HOM05D007122 ORTHO05D008918 2.2e-104 382.9 280 71.1
Gohir.D11G107500 Gossypium hirsutum HOM05D007122 ORTHO05D008918 1.2e-102 377.1 271 71.2
Potri.002G183700 Populus trichocarpa HOM05D007122 ORTHO05D008918 1.2e-102 377.1 288 68.1
Atru.chr5.816 Acer truncatum HOM05D007122 ORTHO05D008918 2.0e-102 376.3 274 69.3
Thecc.01G329100 Theobroma cacao HOM05D007122 ORTHO05D008918 2.0e-102 376.3 256 74.6
COL.COLO4_23084 Corchorus olitorius HOM05D007122 ORTHO05D008918 2.7e-102 375.9 286 68.9
TWI59G0863 Tripterygium wilfordii HOM05D007122 ORTHO05D008918 4.6e-102 375.2 269 69.9
QL05p084392 Quercus lobata HOM05D007122 ORTHO05D008918 1.3e-101 373.6 251 73.3
Gorai.007G115100 Gossypium raimondii HOM05D007122 ORTHO05D008918 1.7e-101 373.2 276 70.7
CiPaw.01G090900 Carya illinoinensis HOM05D007122 ORTHO05D008918 3.0e-101 372.5 282 68.8
CANSAT01G1971 Cannabis sativa HOM05D007122 ORTHO05D008918 2.5e-100 369.4 255 72.5
RcHm_v2.0_Chr2g0149531 Rosa chinensis HOM05D007122 ORTHO05D008918 4.7e-99 365.2 268 70.9
FAN14G1589 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.4e-98 363.6 268 70.5
FvH4_6g36990 Fragaria vesca HOM05D007122 ORTHO05D008918 3.1e-98 362.5 268 70.5
FAN05G3936 Fragaria x ananassa HOM05D007122 ORTHO05D008918 3.1e-98 362.5 268 70.5
Ciclev10021604m.g Citrus clementina HOM05D007122 ORTHO05D008918 2.0e-97 359.8 241 76.3
MD17G1162500 Malus domestica HOM05D007122 ORTHO05D008918 2.0e-97 359.8 276 67.8
Prupe.3G022800 Prunus persica HOM05D007122 ORTHO05D008918 4.9e-96 355.1 275 66.9
EL10Ac5g10570 Beta vulgaris HOM05D007122 ORTHO05D008918 2.4e-95 352.8 224 75.4
Peaxi162Scf00822g00313 Petunia axillaris HOM05D007122 ORTHO05D008918 5.4e-95 351.7 278 65.1
CAN.G21.48 Capsicum annuum HOM05D007122 ORTHO05D008918 2.1e-94 349.7 273 65.2
Cc02_g30330 Coffea canephora HOM05D007122 ORTHO05D008918 2.1e-94 349.7 231 74.5
Sopen08g022350 Solanum pennellii HOM05D007122 ORTHO05D008918 2.1e-94 349.7 277 63.9
AUR62028625 Chenopodium quinoa HOM05D007122 ORTHO05D008918 6.0e-94 348.2 223 74.9
Solyc08g068590.4 Solanum lycopersicum HOM05D007122 ORTHO05D008918 1.3e-93 347.1 277 62.8
PSO782G5442 Papaver somniferum HOM05D007122 ORTHO05D008918 2.3e-93 346.3 278 65.5
MBI12_g33188_MAGBIO Magnolia biondii HOM05D007122 ORTHO05D008918 3.0e-93 345.9 249 70.7
TAR629G1569 Trochodendron aralioides HOM05D007122 ORTHO05D008918 3.9e-93 345.5 249 68.7
AUR62008050 Chenopodium quinoa HOM05D007122 ORTHO05D008918 6.6e-93 344.7 223 74.0
ClCG07G014660 Citrullus lanatus HOM05D007122 ORTHO05D008918 8.6e-93 344.4 259 68.3
Nn1g00501 Nelumbo nucifera HOM05D007122 ORTHO05D008918 8.6e-93 344.4 239 72.8
Hma1.2p1_0074F.1_g038925 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 2.5e-92 342.8 255 70.2
Medtr4g005390 Medicago truncatula HOM05D007122 ORTHO05D008918 3.3e-92 342.4 251 70.5
GSVIVG01027487001 Vitis vinifera HOM05D007122 ORTHO05D008918 1.2e-91 340.5 249 70.7
Ca_20970_v3 Cicer arietinum L. HOM05D007122 ORTHO05D008918 1.6e-91 340.1 251 68.1
MELO3C026712.2 Cucumis melo HOM05D007122 ORTHO05D008918 2.1e-91 339.7 252 69.8
CsaV3_3G030490 Cucumis sativus L. HOM05D007122 ORTHO05D008918 3.6e-91 339.0 250 69.6
Lj3g0016159 Lotus japonicus HOM05D007122 ORTHO05D008918 4.7e-91 338.6 254 68.9
Phvul.010G164100 Phaseolus vulgaris HOM05D007122 ORTHO05D008918 4.7e-91 338.6 224 75.4
Nitab4.5_0006202g0020 Nicotiana tabacum HOM05D007122 ORTHO05D008918 4.0e-90 335.5 278 63.3
Lj9A610T61 Lonicera japonica HOM05D007122 ORTHO05D008918 1.5e-89 333.6 228 73.2
Glyma.07G002100 Glycine max HOM05D007122 ORTHO05D008918 2.6e-89 332.8 225 73.8
TPR.G38811 Trifolium pratense HOM05D007122 ORTHO05D008918 3.4e-89 332.4 235 73.2
MSTRG.12208 Avicennia marina HOM05D007122 ORTHO05D008918 4.4e-89 332.0 278 60.1
PGSC0003DMG400029047 Solanum tuberosum HOM05D007122 ORTHO05D008918 8.3e-88 327.8 308 56.8
Oeu050289.1 Olea europaea HOM05D007122 ORTHO05D008918 1.4e-87 327.0 277 61.0
HanXRQChr16g0524441 Helianthus annuus HOM05D007122 ORTHO05D008918 3.2e-87 325.9 228 69.7
arahy.Tifrunner.gnm1.ann1.KLKB5C Arachis hypogaea HOM05D007122 ORTHO05D008918 4.1e-87 325.5 247 65.2
arahy.Tifrunner.gnm1.ann1.XK7RJX Arachis hypogaea HOM05D007122 ORTHO05D008918 5.4e-87 325.1 223 69.5
Sabra02G0131900 Salix brachista HOM05D007122 ORTHO05D008918 5.4e-87 325.1 377 51.5
HPP92_007409 Vanilla planifolia HOM05D007122 ORTHO05D008918 2.7e-86 322.8 224 71.4
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 1.0e-85 320.9 221 71.9
Lalb_Chr04g0264851 Lupinus albus HOM05D007122 ORTHO05D008918 1.3e-85 320.5 223 71.3
Eucgr.E00013 Eucalyptus grandis HOM05D007122 ORTHO05D008918 1.7e-85 320.1 226 69.5
Hund02816 Selenicereus undatus HOM05D007122 ORTHO05D008918 1.7e-85 320.1 262 62.2
Os10g0509200 Oryza sativa ssp. japonica HOM05D007122 ORTHO05D008918 1.5e-84 317.0 251 65.3
Zm00001eb220590 Zea mays HOM05D007122 ORTHO05D008918 7.3e-84 314.7 226 69.9
CDE02G4652 Ceratophyllum demersum HOM05D007122 ORTHO05D008918 9.5e-84 314.3 228 69.7
Actinidia33027 Actinidia chinensis HOM05D007122 ORTHO05D008918 1.2e-83 313.9 258 64.3
Manes.01G237100 Manihot esculenta HOM05D007122 ORTHO05D008918 3.6e-83 312.4 248 66.9
unitig_0.g1006 Utricularia gibba HOM05D007122 ORTHO05D003998 1.4e-82 310.5 252 61.1
ATR0579G047 Amborella trichopoda HOM05D007122 ORTHO05D008918 1.8e-82 310.1 252 63.5
Rhsim04G0175900 Rhododendron simsii HOM05D007122 ORTHO05D008918 1.1e-76 290.8 269 57.2
vmacro08515 Vaccinium macrocarpon HOM05D007122 ORTHO05D008918 4.3e-76 288.9 237 62.9
Gohir.A11G103000 Gossypium hirsutum HOM05D007122 ORTHO05D008918 8.1e-75 284.6 185 76.8
Sed0017612 Sechium edule HOM05D007122 ORTHO05D008918 3.1e-74 282.7 192 71.9
VMungo0331G0463 Vigna mungo HOM05D000070 ORTHO05D003491 1.2e-73 280.8 224 65.2
PGR042G2951 Punica granatum HOM05D007122 ORTHO05D008918 2.9e-72 276.2 196 70.9
Dinv25395 Davidia involucrata HOM05D007122 ORTHO05D008918 2.1e-70 270.0 244 59.0
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 2.1e-70 270.0 216 65.7
Psat7g265240 Pisum sativum HOM05D007122 ORTHO05D008918 2.7e-70 269.6 205 68.3
Ah.11g050690 Amaranthus hybridus HOM05D007122 ORTHO05D008918 6.0e-70 268.5 254 55.9
Nitab4.5_0000406g0060 Nicotiana tabacum HOM05D006934 ORTHO05D008743 4.0e-66 255.8 221 59.3
Mapoly0069s0014 Marchantia polymorpha HOM05D007122 ORTHO05D008918 2.2e-64 250.0 249 51.4
SMO232G0083 Selaginella moellendorffii HOM05D007122 ORTHO05D008918 2.4e-63 246.5 224 54.9
Aqoxy5G04392 Aquilegia oxysepala HOM05D007122 ORTHO05D008918 7.9e-62 241.5 247 55.5
SGA_v2.0_scaffold104G30244 Striga asiatica HOM05D007122 ORTHO05D008918 2.3e-61 240.0 284 48.6
Duzib133G0914 Durio zibethinus HOM05D007122 ORTHO05D008918 1.9e-60 236.9 249 53.4
PSO063G7482 Papaver somniferum HOM05D007122 ORTHO05D008918 2.4e-58 229.9 150 74.7
Pp3c11_15290 Physcomitrium patens HOM05D007122 ORTHO05D008918 2.2e-56 223.4 262 43.9
Sc05g0001590 Simmondsia chinensis HOM05D007122 ORTHO05D008918 1.1e-55 221.1 166 66.3
FAN02G0509 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.0e-53 214.5 200 58.0
Glyma.08G224600 Glycine max HOM05D007122 ORTHO05D008918 1.3e-53 214.2 152 71.1
Dinv32665 Davidia involucrata HOM05D007122 ORTHO05D008918 9.6e-52 208.0 158 64.6
Haze_16258 Corylus avellana HOM05D007122 ORTHO05D008918 3.7e-51 206.1 331 41.1
Glyma.14G134000 Glycine max HOM05D007122 ORTHO05D008918 1.6e-46 190.7 153 61.4
Migut.N02127 Erythranthe guttata HOM05D007122 ORTHO05D008918 5.1e-45 185.7 146 63.0
QL05p083819 Quercus lobata HOM05D007122 ORTHO05D008918 1.7e-35 154.1 176 51.1
Pp3c2_10460 Physcomitrium patens HOM05D007122 ORTHO05D008918 1.4e-31 141.0 149 45.0
Zm00001eb094490 Zea mays HOM05D007122 ORTHO05D008918 3.0e-29 133.3 90 70.0
Cre01.g039550 Chlamydomonas reinhardtii HOM05D007122 ORTHO05D008918 7.4e-28 128.6 241 35.3
Psat7g265400 Pisum sativum HOM05D007122 ORTHO05D008918 1.2e-25 121.3 88 69.3
Hma1.2p1_0074F.1_g038930 Hydrangea macrophylla HOM05D007122 ORTHO05D008918 3.7e-19 99.8 62 77.4
MCO07G119 Micromonas commoda HOM05D007122 ORTHO05D008918 2.0e-17 94.0 181 33.1
FAN05G3242 Fragaria x ananassa HOM05D007122 ORTHO05D008918 7.5e-12 75.5 39 87.2
FAN14G0283 Fragaria x ananassa HOM05D007122 ORTHO05D008918 7.5e-12 75.5 39 87.2
FvH4_6g35960 Fragaria vesca HOM05D007122 ORTHO05D008918 3.7e-11 73.2 39 84.6
C04p72510 Brassica napus HOM05D000051 ORTHO05D000015 2.4e-10 70.5 75 53.3
BolC4t28739H Brassica oleracea HOM05D000051 ORTHO05D000015 2.4e-10 70.5 75 53.3
SGA_v2.0_scaffold159G37569 Striga asiatica HOM05D007122 ORTHO05D008918 9.1e-10 68.6 120 35.8
CBR_g49209 Chara braunii HOM05D002234 ORTHO05D002254 2.9e-08 63.5 244 26.6
PRCOL_00001829 Prasinoderma coloniale HOM05D002234 ORTHO05D002254 2.9e-08 63.5 241 25.7
THA.LOC104812983 Tarenaya hassleriana HOM05D002234 ORTHO05D002254 2.9e-08 63.5 252 25.4
Pp3c15_4460 Physcomitrium patens HOM05D002234 ORTHO05D002254 3.8e-08 63.2 233 26.2
SMO367G0795 Selaginella moellendorffii HOM05D002234 ORTHO05D002254 6.5e-08 62.4 237 25.3
MSTRG.14623 Avicennia marina HOM05D002234 ORTHO05D002254 1.1e-07 61.6 290 25.5
FAN09G2218 Fragaria x ananassa HOM05D007122 ORTHO05D008918 1.9e-07 60.8 78 48.7
DCAR_027858 Daucus carota HOM05D002234 ORTHO05D002254 2.5e-07 60.5 269 24.2
Thhalv10028808m.g Eutrema salsugineum HOM05D002234 ORTHO05D002254 2.5e-07 60.5 251 25.5
BcaC04g21266 Brassica carinata HOM05D002234 ORTHO05D002254 5.5e-07 59.3 251 24.7
A09p26540 Brassica napus HOM05D002234 ORTHO05D002254 5.5e-07 59.3 251 24.7
C09p33660 Brassica napus HOM05D002234 ORTHO05D002254 5.5e-07 59.3 251 24.7
BolC9t56200H Brassica oleracea HOM05D002234 ORTHO05D002254 5.5e-07 59.3 251 24.7
BraA09t38228Z Brassica rapa HOM05D002234 ORTHO05D002254 5.5e-07 59.3 251 24.7
CANSAT56G3737 Cannabis sativa HOM05D002234 ORTHO05D002254 7.2e-07 58.9 255 25.1
CiPaw.09G099600 Carya illinoinensis HOM05D002234 ORTHO05D002254 9.4e-07 58.5 251 27.5
Mapoly0070s0031 Marchantia polymorpha HOM05D002234 ORTHO05D002254 9.4e-07 58.5 247 26.7
EL10Ac8g20136 Beta vulgaris HOM05D002234 ORTHO05D002254 1.6e-06 57.8 260 28.5
Lsat_1_v5_gn_8_74601 Lactuca sativa HOM05D050850 ORTHO05D008918 1.6e-06 57.8 34 73.5
MBI19_g03680_MAGBIO Magnolia biondii HOM05D002234 ORTHO05D002254 1.6e-06 57.8 249 24.1
SalBow8G1590 Salvia bowleyana HOM05D002234 ORTHO05D002254 1.6e-06 57.8 270 24.1
BcaB01g02608 Brassica carinata HOM05D002234 ORTHO05D002254 2.1e-06 57.4 248 25.0
BcaB01g01781 Brassica carinata HOM05D002234 ORTHO05D002254 2.7e-06 57.0 251 24.7
Carub.0006s3205 Capsella rubella HOM05D002234 ORTHO05D002254 2.7e-06 57.0 251 25.1
Cfa000140 Carpinus fangiana HOM05D002234 ORTHO05D002254 2.7e-06 57.0 244 26.6
Sp6g04720 Schrenkiella parvula HOM05D002234 ORTHO05D002254 2.7e-06 57.0 251 25.5
Cfa000143 Carpinus fangiana HOM05D002234 ORTHO05D002254 3.6e-06 56.6 254 24.8
DCAR_008235 Daucus carota HOM05D002234 ORTHO05D002254 3.6e-06 56.6 233 27.9
Duzib192G0327 Durio zibethinus HOM05D002234 ORTHO05D002254 3.6e-06 56.6 162 30.2
ATR0829G030 Amborella trichopoda HOM05D002234 ORTHO05D002254 4.7e-06 56.2 240 25.4
AagrBONN_evm.TU.Sc2ySwM_369.590 Anthoceros agrestis HOM05D002234 ORTHO05D002254 4.7e-06 56.2 250 25.6
CANSAT56G3028 Cannabis sativa HOM05D002234 ORTHO05D002254 4.7e-06 56.2 159 29.6
CDE04G1021 Ceratophyllum demersum HOM05D002234 ORTHO05D002254 4.7e-06 56.2 240 28.3
Phvul.006G145100 Phaseolus vulgaris HOM05D002234 ORTHO05D002254 4.7e-06 56.2 235 25.1
AL6G47760 Arabidopsis lyrata HOM05D002234 ORTHO05D002254 6.1e-06 55.8 252 25.4
AT4G22240 Arabidopsis thaliana HOM05D002234 ORTHO05D002254 6.1e-06 55.8 295 24.7
BraA03t12178Z Brassica rapa HOM05D002234 ORTHO05D002254 6.1e-06 55.8 247 25.1
Cfa000141 Carpinus fangiana HOM05D002234 ORTHO05D002254 6.1e-06 55.8 254 24.8
Duzib235G1028 Durio zibethinus HOM05D002234 ORTHO05D002254 6.1e-06 55.8 162 30.2
Sed0005439 Sechium edule HOM05D006432 ORTHO05D008257 6.1e-06 55.8 216 26.4
CARHR253420 Cardamine hirsuta HOM05D002234 ORTHO05D002254 8.0e-06 55.5 260 25.8
Hma1.2p1_1358F.1_g278010 Hydrangea macrophylla HOM05D002234 ORTHO05D002254 8.0e-06 55.5 234 27.4
QL05p070719 Quercus lobata HOM05D002234 ORTHO05D002254 8.0e-06 55.5 158 29.7


User provided reference genes

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