Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G46640 Arabidopsis thaliana HOM05D012720 ORTHO05D007257 1.2e-158 563.1 284 100.0
CARHR141980 Cardamine hirsuta HOM05D012720 ORTHO05D007257 4.2e-116 421.8 284 77.8
AL4G46070 Arabidopsis lyrata HOM05D012720 ORTHO05D007257 7.2e-116 421.0 288 79.9
Carub.0004s2935 Capsella rubella HOM05D012720 ORTHO05D007257 7.0e-111 404.4 267 79.4
Thhalv10001576m.g Eutrema salsugineum HOM05D012720 ORTHO05D007257 2.3e-106 389.4 291 72.9
Sp4g28690 Schrenkiella parvula HOM05D012720 ORTHO05D007257 2.7e-102 375.9 297 70.4
BolC4t21784H Brassica oleracea HOM05D012720 ORTHO05D007257 3.6e-99 365.5 289 71.3
BcaC02g12658 Brassica carinata HOM05D012720 ORTHO05D007257 5.2e-98 361.7 298 70.1
BcaB01g03200 Brassica carinata HOM05D012720 ORTHO05D007257 6.8e-98 361.3 295 67.5
A05p01150 Brassica napus HOM05D012720 ORTHO05D007257 2.0e-94 349.7 289 69.2
BraA05t19115Z Brassica rapa HOM05D012720 ORTHO05D007257 3.0e-93 345.9 289 68.2
C04p01310 Brassica napus HOM05D012720 ORTHO05D007257 5.6e-92 341.7 283 68.9
BcaC02g07047 Brassica carinata HOM05D012720 ORTHO05D007257 4.4e-89 332.0 276 68.8
Aa31LG1G28040 Aethionema arabicum HOM05D007199 ORTHO05D007257 1.6e-62 243.8 295 54.6
THA.LOC104802086 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 2.0e-49 200.3 294 48.0
THA.LOC104817388 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 5.3e-42 175.6 301 47.2
Ciclev10024292m.g Citrus clementina HOM05D007199 ORTHO05D007257 4.2e-23 112.8 269 36.4
Gohir.D11G103900 Gossypium hirsutum HOM05D007199 ORTHO05D007257 4.6e-22 109.4 271 37.3
Gorai.007G111200 Gossypium raimondii HOM05D007199 ORTHO05D007257 1.4e-21 107.8 271 36.9
Atru.chr5.734 Acer truncatum HOM05D007199 ORTHO05D007257 3.9e-21 106.3 304 34.5
Cpa.g.sc144.10 Carica papaya HOM05D007199 ORTHO05D007257 3.9e-21 106.3 294 34.7
Thecc.01G336800 Theobroma cacao HOM05D007199 ORTHO05D007257 6.7e-21 105.5 273 35.5
Duzib138G1694 Durio zibethinus HOM05D007199 ORTHO05D007257 9.7e-20 101.7 315 33.3
Gohir.A11G099400 Gossypium hirsutum HOM05D007199 ORTHO05D007257 8.2e-19 98.6 273 35.2
Potri.014G102600 Populus trichocarpa HOM05D007199 ORTHO05D007257 9.1e-18 95.1 276 36.2
CiPaw.02G043300 Carya illinoinensis HOM05D007199 ORTHO05D007257 5.9e-17 92.4 281 34.2
Prupe.2G194000 Prunus persica HOM05D007199 ORTHO05D007257 7.7e-17 92.0 317 33.1
FAN03G0194 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.7e-16 90.9 308 34.4
Gohir.A08G124000 Gossypium hirsutum HOM05D007199 ORTHO05D007257 5.0e-16 89.4 278 33.1
Potri.002G175300 Populus trichocarpa HOM05D007199 ORTHO05D007257 5.0e-16 89.4 270 33.7
Gohir.D08G145100 Gossypium hirsutum HOM05D007199 ORTHO05D007257 8.5e-16 88.6 277 33.2
Gorai.004G150000 Gossypium raimondii HOM05D007199 ORTHO05D007257 1.1e-15 88.2 277 33.2
Nn1g00376 Nelumbo nucifera HOM05D007199 ORTHO05D007257 1.9e-15 87.4 276 29.3
TWI14G0585 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 2.5e-15 87.0 303 31.4
FAN10G2445 Fragaria x ananassa HOM05D007199 ORTHO05D007257 7.2e-15 85.5 308 33.1
FAN10G3440 Fragaria x ananassa HOM05D007199 ORTHO05D007257 7.2e-15 85.5 308 33.1
Psat4g216200 Pisum sativum HOM05D007199 ORTHO05D007257 9.4e-15 85.1 275 29.8
PSO782G1188 Papaver somniferum HOM05D007199 ORTHO05D007257 2.1e-14 84.0 272 33.1
Phvul.010G116850 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 2.1e-14 84.0 272 32.0
Phvul.010G116900 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 2.1e-14 84.0 272 32.0
Haze_15700 Corylus avellana HOM05D007199 ORTHO05D007257 2.7e-14 83.6 302 31.8
MD00G1035800 Malus domestica HOM05D007199 ORTHO05D007257 2.7e-14 83.6 333 33.9
Ca_23498_v3 Cicer arietinum L. HOM05D007199 ORTHO05D007257 3.6e-14 83.2 259 33.6
Duzib133G0933 Durio zibethinus HOM05D007199 ORTHO05D007257 3.6e-14 83.2 329 31.0
FvH4_7g17280 Fragaria vesca HOM05D007199 ORTHO05D007257 3.6e-14 83.2 302 32.5
Dinv34240 Davidia involucrata HOM05D007199 ORTHO05D007257 1.4e-13 81.3 319 31.3
FAN01G2057 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.8e-13 80.9 310 32.9
Medtr8g027100 Medicago truncatula HOM05D007199 ORTHO05D007257 1.8e-13 80.9 273 31.5
Lalb_Chr15g0076391 Lupinus albus HOM05D007199 ORTHO05D007257 2.3e-13 80.5 276 29.7
VMungo0331G0932 Vigna mungo HOM05D007199 ORTHO05D007257 3.0e-13 80.1 274 32.8
FAN06G3172 Fragaria x ananassa HOM05D007199 ORTHO05D007257 3.9e-13 79.7 302 31.8
RcHm_v2.0_Chr1g0360641 Rosa chinensis HOM05D007199 ORTHO05D007257 8.8e-13 78.6 282 33.3
TAR629G0242 Trochodendron aralioides HOM05D007199 ORTHO05D007257 8.8e-13 78.6 263 31.2
MD07G1155200 Malus domestica HOM05D007199 ORTHO05D007257 1.1e-12 78.2 324 30.9
Dinv32625 Davidia involucrata HOM05D007199 ORTHO05D007257 1.5e-12 77.8 276 29.7
Nitab4.5_0002638g0020 Nicotiana tabacum HOM05D007199 ORTHO05D007257 2.0e-12 77.4 256 27.7
TPR.G15900 Trifolium pratense HOM05D007199 ORTHO05D007257 3.3e-12 76.6 271 31.7
MELO3C022248.2 Cucumis melo HOM05D007199 ORTHO05D007257 4.4e-12 76.3 307 29.0
Glyma.16G021400 Glycine max HOM05D007199 ORTHO05D007257 5.7e-12 75.9 279 29.7
QL08p046296 Quercus lobata HOM05D007199 ORTHO05D007257 5.7e-12 75.9 273 29.7
Glyma.07G052500 Glycine max HOM05D007199 ORTHO05D007257 1.3e-11 74.7 279 30.5
Lj3g0002992 Lotus japonicus HOM05D007199 ORTHO05D007257 1.3e-11 74.7 285 30.2
Solyc10g009320.3 Solanum lycopersicum HOM05D007199 ORTHO05D007257 2.8e-11 73.6 270 28.9
Manes.01G254801 Manihot esculenta HOM05D007199 ORTHO05D007257 4.8e-11 72.8 303 30.4
TAR375G0146 Trochodendron aralioides HOM05D007199 ORTHO05D007257 4.8e-11 72.8 270 31.5
TWI23G0381 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 1.1e-10 71.6 308 28.2
Manes.05G019000 Manihot esculenta HOM05D007199 ORTHO05D007257 1.8e-10 70.9 284 30.3
HanXRQChr04g0120361 Helianthus annuus HOM05D007199 ORTHO05D007257 2.4e-10 70.5 270 30.0
DCAR_002988 Daucus carota HOM05D007199 ORTHO05D007257 3.1e-10 70.1 269 28.6
Nitab4.5_0014168g0010 Nicotiana tabacum HOM05D007199 ORTHO05D007257 5.3e-10 69.3 272 28.3
CsaV3_6G008960 Cucumis sativus L. HOM05D007199 ORTHO05D007257 9.1e-10 68.6 273 27.5
Eucgr.E00024 Eucalyptus grandis HOM05D007199 ORTHO05D007257 9.1e-10 68.6 285 28.1
CANSAT56G1498 Cannabis sativa HOM05D007199 ORTHO05D007257 1.2e-09 68.2 248 29.0
Hund16734 Selenicereus undatus HOM05D007199 ORTHO05D007257 1.2e-09 68.2 259 31.3
Sed0010537 Sechium edule HOM05D007199 ORTHO05D007257 2.0e-09 67.4 268 27.6
Sopen10g005110 Solanum pennellii HOM05D007199 ORTHO05D007257 2.0e-09 67.4 260 29.2
ECA236G3069 Erigeron canadensis HOM05D007199 ORTHO05D007257 2.6e-09 67.0 278 26.6
Hma1.2p1_0309F.1_g120450 Hydrangea macrophylla HOM05D007199 ORTHO05D007257 2.6e-09 67.0 307 27.0
AUR62008640 Chenopodium quinoa HOM05D021513 ORTHO05D007257 3.5e-09 66.6 250 30.8
Lalb_Chr10g0100741 Lupinus albus HOM05D007199 ORTHO05D007257 4.5e-09 66.2 277 30.0
Aqoxy5G04262 Aquilegia oxysepala HOM05D007199 ORTHO05D007257 1.7e-08 64.3 283 30.0
PGSC0003DMG400005529 Solanum tuberosum HOM05D007199 ORTHO05D007257 2.2e-08 63.9 257 28.4
EL10Ac7g17504 Beta vulgaris HOM05D021513 ORTHO05D007257 8.5e-08 62.0 225 28.0
CSS0043385 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 1.1e-07 61.6 264 29.9
CDE11G0583 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 1.5e-07 61.2 287 27.5
Gohir.A12G114200 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.5e-07 61.2 265 28.7
Solyc01g096260.4 Solanum lycopersicum HOM05D007199 ORTHO05D007257 1.9e-07 60.8 282 25.9
ATR0620G133 Amborella trichopoda HOM05D007199 ORTHO05D007257 2.5e-07 60.5 250 29.6
CiPaw.01G079500 Carya illinoinensis HOM05D007199 ORTHO05D007257 2.5e-07 60.5 289 27.7
Sabra14G0075600 Salix brachista HOM05D007199 ORTHO05D007257 2.5e-07 60.5 66 51.5
GSVIVG01027402001 Vitis vinifera HOM05D007199 ORTHO05D007257 2.5e-07 60.5 308 28.6
Actinidia28100 Actinidia chinensis HOM05D007199 ORTHO05D007257 7.2e-07 58.9 268 27.6
Ah.15g093270 Amaranthus hybridus HOM05D021513 ORTHO05D007257 7.2e-07 58.9 225 30.7
MSTRG.17369 Avicennia marina HOM05D007199 ORTHO05D007257 1.2e-06 58.2 313 26.8
Lsat_1_v5_gn_4_32721 Lactuca sativa HOM05D007199 ORTHO05D007257 1.6e-06 57.8 272 26.8
CDE09G0027 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 2.1e-06 57.4 284 26.8
Sopen01g040020 Solanum pennellii HOM05D007199 ORTHO05D007257 3.6e-06 56.6 285 26.7
COL.COLO4_06259 Corchorus olitorius HOM05D007199 ORTHO05D007257 8.0e-06 55.5 156 32.1


User provided reference genes

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