Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 2.6e-184 648.7 343 100.0
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 2.5e-163 578.9 342 90.4
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 9.2e-150 533.9 342 83.3
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.4e-145 520.0 342 80.7
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 1.4e-142 510.0 347 80.7
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.4e-142 510.0 339 81.1
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 4.6e-141 505.0 347 80.1
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 1.3e-140 503.4 350 80.3
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 8.7e-140 500.7 365 76.4
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 1.5e-139 500.0 348 79.9
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 4.2e-134 481.9 342 77.5
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 4.6e-133 478.4 346 76.9
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 8.1e-122 441.0 352 70.7
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 4.9e-111 405.2 344 66.9
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 5.1e-92 342.0 372 54.6
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 5.1e-92 342.0 364 55.5
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 5.1e-92 342.0 364 55.5
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 7.4e-91 338.2 364 55.5
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 2.8e-90 336.3 364 55.5
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 4.8e-90 335.5 371 54.7
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 1.1e-89 334.3 351 57.8
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 2.4e-89 333.2 366 54.4
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 7.2e-86 321.6 372 53.2
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 3.6e-85 319.3 371 53.6
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 3.0e-84 316.2 367 54.2
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 3.9e-84 315.8 363 53.7
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 1.1e-83 314.3 372 52.2
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 2.6e-83 313.2 371 52.3
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 5.7e-83 312.0 371 51.2
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 9.7e-83 311.2 375 51.5
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 1.7e-82 310.5 359 54.3
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 1.7e-82 310.5 366 50.5
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.1e-81 307.8 377 50.9
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 1.4e-81 307.4 375 50.9
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 4.1e-81 305.8 371 51.8
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 9.1e-81 304.7 374 50.8
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 1.6e-80 303.9 366 50.0
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 5.9e-80 302.0 405 47.7
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 7.7e-80 301.6 368 52.2
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 1.3e-79 300.8 366 49.7
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.3e-79 300.8 377 49.6
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 1.3e-79 300.8 378 49.2
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.2e-79 300.1 370 50.5
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 2.9e-79 299.7 373 49.3
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 3.8e-79 299.3 369 49.6
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 8.5e-79 298.1 376 49.2
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 1.5e-78 297.4 367 49.6
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 3.2e-78 296.2 376 49.5
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 7.2e-78 295.0 368 49.2
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 9.4e-78 294.7 362 51.4
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 2.7e-77 293.1 364 51.6
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 3.6e-77 292.7 379 49.6
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 3.6e-77 292.7 374 51.6
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 4.7e-77 292.4 357 49.3
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 4.7e-77 292.4 372 50.0
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 1.0e-76 291.2 371 48.8
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.8e-76 290.4 368 49.5
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 4.0e-76 289.3 373 50.1
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 2.0e-75 287.0 373 48.5
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 2.0e-75 287.0 372 49.7
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 2.0e-75 287.0 367 49.0
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 2.8e-74 283.1 366 48.6
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 4.8e-74 282.3 365 49.0
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 8.3e-74 281.6 368 48.9
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 8.3e-74 281.6 372 48.4
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 1.4e-73 280.8 373 47.5
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 2.4e-73 280.0 364 49.7
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 3.1e-73 279.6 390 45.4
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 3.1e-73 279.6 365 47.1
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 7.0e-73 278.5 369 46.6
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.2e-72 277.7 405 44.7
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.6e-72 277.3 342 49.7
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 2.7e-72 276.6 360 48.1
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 5.9e-72 275.4 405 44.4
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 7.7e-72 275.0 397 44.3
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 1.0e-71 274.6 364 47.8
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 1.3e-71 274.2 370 47.6
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 1.3e-71 274.2 363 46.8
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 5.0e-71 272.3 365 47.4
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 2.5e-70 270.0 376 46.0
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 9.4e-70 268.1 400 45.8
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 9.4e-70 268.1 370 47.0
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 6.1e-69 265.4 304 53.9
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 4.0e-68 262.7 370 47.3
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 4.0e-68 262.7 407 42.8
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 6.8e-68 261.9 374 47.1
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 6.8e-68 261.9 359 46.5
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 2.6e-67 260.0 387 46.3
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 4.4e-67 259.2 358 46.9
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 1.7e-66 257.3 315 51.4
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 2.2e-66 256.9 374 46.8
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 1.4e-65 254.2 381 45.4
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 5.4e-65 252.3 363 44.1
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 1.2e-64 251.1 412 41.5
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 3.5e-64 249.6 335 47.2
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 5.0e-63 245.7 352 46.6
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 6.6e-63 245.4 361 44.9
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 5.5e-62 242.3 322 48.8
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 3.6e-61 239.6 349 46.4
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 1.0e-60 238.0 372 45.2
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 2.6e-59 233.4 314 49.0
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 8.3e-58 228.4 376 41.0
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 3.2e-57 226.5 458 36.9
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 2.3e-55 220.3 365 41.9
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.9e-55 219.9 463 36.7
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 4.3e-54 216.1 243 50.2
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 1.2e-53 214.5 405 40.0
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 4.7e-53 212.6 311 46.0
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 8.9e-52 208.4 226 53.5
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.0e-51 207.2 315 46.3
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 2.0e-51 207.2 319 42.6
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 2.3e-44 183.7 238 47.9
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 1.2e-43 181.4 249 47.0
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 6.4e-34 149.1 280 38.6
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 1.1e-33 148.3 275 41.8
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 2.4e-33 147.1 314 40.4
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 7.3e-30 135.6 160 52.5
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 4.7e-29 132.9 394 31.0
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 1.5e-27 127.9 146 49.3
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 1.5e-27 127.9 146 49.3
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 3.4e-27 126.7 130 53.1
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 9.9e-27 125.2 333 33.0
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 3.5e-24 116.7 408 28.9
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 3.3e-22 110.2 141 47.5
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 6.2e-21 105.9 310 31.6
Sp4g28240 Schrenkiella parvula HOM05D005133 ORTHO05D006685 1.4e-20 104.8 52 88.5
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 7.1e-17 92.4 98 60.2
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 7.9e-16 89.0 165 40.6
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 3.0e-15 87.0 140 43.6
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 1.1e-12 78.6 65 69.2
RcHm_v2.0_Chr1g0358101 Rosa chinensis HOM05D004139 ORTHO05D004873 1.8e-12 77.8 115 44.3
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.7e-10 71.2 65 58.5
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.9e-09 67.8 93 41.9
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 1.5e-06 58.2 60 48.3


User provided reference genes

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