Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G46100 Arabidopsis thaliana HOM05D007525 ORTHO05D003398 8.5e-142 506.9 241 100.0
AL4G45330 Arabidopsis lyrata HOM05D007525 ORTHO05D003398 2.6e-135 485.3 242 95.5
Carub.0004s2880 Capsella rubella HOM05D007525 ORTHO05D003398 6.7e-131 470.7 241 92.9
Thhalv10001607m.g Eutrema salsugineum HOM05D007525 ORTHO05D003398 1.8e-128 462.6 243 90.1
Sp4g28160 Schrenkiella parvula HOM05D007525 ORTHO05D003398 8.0e-116 420.6 243 85.6
A05p06060 Brassica napus HOM05D007525 ORTHO05D003398 1.8e-112 409.5 245 83.3
C04p06980 Brassica napus HOM05D005821 ORTHO05D006649 1.3e-110 403.3 247 81.4
Aa31LG1G27510 Aethionema arabicum HOM05D005821 ORTHO05D006649 1.7e-110 402.9 241 82.6
BolC4t22319H Brassica oleracea HOM05D005821 ORTHO05D006649 1.1e-109 400.2 247 81.0
GSVIVG01026980001 Vitis vinifera HOM05D007525 ORTHO05D003398 1.5e-85 320.1 233 64.4
Actinidia10060 Actinidia chinensis HOM05D007525 ORTHO05D003398 5.6e-85 318.2 235 66.8
CSS0031135 Camellia sinensis var. sinensis HOM05D007525 ORTHO05D003398 6.2e-84 314.7 242 66.1
Thecc.01G354100 Theobroma cacao HOM05D007525 ORTHO05D003398 1.1e-83 313.9 236 63.1
MSTRG.4841 Avicennia marina HOM05D007525 ORTHO05D003398 3.1e-83 312.4 242 62.4
AUR62022606 Chenopodium quinoa HOM05D007525 ORTHO05D003398 1.5e-82 310.1 211 68.2
Cfa003884 Carpinus fangiana HOM05D007525 ORTHO05D003398 2.0e-82 309.7 236 62.7
MELO3C021185.2 Cucumis melo HOM05D007525 ORTHO05D003398 3.4e-82 308.9 208 66.3
Manes.05G030450 Manihot esculenta HOM05D007525 ORTHO05D003398 3.4e-82 308.9 235 62.1
Nn1g01647 Nelumbo nucifera HOM05D007525 ORTHO05D003398 5.8e-82 308.1 239 62.8
Potri.002G162800 Populus trichocarpa HOM05D007525 ORTHO05D003398 5.8e-82 308.1 242 62.4
Duzib133G0712 Durio zibethinus HOM05D007525 ORTHO05D003398 1.3e-81 307.0 236 62.3
Migut.N01460 Erythranthe guttata HOM05D007525 ORTHO05D003398 1.3e-81 307.0 213 67.6
unitig_22.g6725 Utricularia gibba HOM05D007525 ORTHO05D003398 1.7e-81 306.6 235 63.0
CsaV3_6G000860 Cucumis sativus L. HOM05D007525 ORTHO05D003398 2.2e-81 306.2 226 61.5
Atru.chr5.548 Acer truncatum HOM05D007525 ORTHO05D003398 1.4e-80 303.5 227 63.9
EL10Ac1g00368 Beta vulgaris HOM05D007525 ORTHO05D003398 1.9e-80 303.1 194 70.6
Sopen01g038780 Solanum pennellii HOM05D007525 ORTHO05D003398 1.9e-80 303.1 242 62.8
Sabra02G0147700 Salix brachista HOM05D007525 ORTHO05D003398 2.4e-80 302.8 242 61.6
Cpa.g.sc184.25 Carica papaya HOM05D007525 ORTHO05D003398 4.1e-80 302.0 214 66.8
SalBow5G0215 Salvia bowleyana HOM05D007525 ORTHO05D003398 4.1e-80 302.0 212 67.0
THA.LOC104817313 Tarenaya hassleriana HOM05D007525 ORTHO05D003398 4.1e-80 302.0 262 58.8
TAR636G1192 Trochodendron aralioides HOM05D007525 ORTHO05D003398 4.1e-80 302.0 231 62.8
CiPaw.01G065400 Carya illinoinensis HOM05D007525 ORTHO05D003398 5.4e-80 301.6 228 63.2
PGSC0003DMG400000187 Solanum tuberosum HOM05D007525 ORTHO05D003398 5.4e-80 301.6 246 62.6
Prupe.2G175600 Prunus persica HOM05D007525 ORTHO05D003398 2.1e-79 299.7 235 60.9
Oeu036594.1 Olea europaea HOM05D007525 ORTHO05D003398 2.7e-79 299.3 232 62.5
PGR042G3120 Punica granatum HOM05D007525 ORTHO05D003398 2.7e-79 299.3 237 59.1
Gorai.001G158400 Gossypium raimondii HOM05D007525 ORTHO05D003398 3.5e-79 298.9 213 65.3
Solyc01g095000.3 Solanum lycopersicum HOM05D007525 ORTHO05D003398 3.5e-79 298.9 238 60.9
Nitab4.5_0010703g0010 Nicotiana tabacum HOM05D007525 ORTHO05D003398 4.6e-79 298.5 238 59.2
Gohir.D07G146200 Gossypium hirsutum HOM05D007525 ORTHO05D003398 6.0e-79 298.1 213 65.3
FvH4_7g15085 Fragaria vesca HOM05D007525 ORTHO05D003398 1.3e-78 297.0 228 60.5
Lalb_Chr10g0096641 Lupinus albus HOM05D007525 ORTHO05D003398 2.3e-78 296.2 206 67.5
CANSAT56G0175 Cannabis sativa HOM05D007525 ORTHO05D003398 3.9e-78 295.4 209 65.6
VMungo0331G0679 Vigna mungo HOM05D007525 ORTHO05D003398 3.9e-78 295.4 197 70.1
Ca_03496_v3 Cicer arietinum L. HOM05D007525 ORTHO05D003398 6.6e-78 294.7 199 71.4
Ciclev10022006m.g Citrus clementina HOM05D007525 ORTHO05D003398 6.6e-78 294.7 227 60.4
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 8.6e-78 294.3 228 60.1
Lj3g0004891 Lotus japonicus HOM05D007525 ORTHO05D003398 8.6e-78 294.3 199 69.3
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.1e-77 293.9 239 59.0
Lj7A509T109 Lonicera japonica HOM05D007525 ORTHO05D003398 1.1e-77 293.9 212 66.5
Psat4g157560 Pisum sativum HOM05D007525 ORTHO05D003398 1.5e-77 293.5 196 70.4
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.5e-77 292.7 239 59.0
Nitab4.5_0000915g0170 Nicotiana tabacum HOM05D007525 ORTHO05D003398 2.5e-77 292.7 239 58.6
ClCG06G003450 Citrullus lanatus HOM05D007525 ORTHO05D003398 3.3e-77 292.4 214 63.6
Medtr8g028545 Medicago truncatula HOM05D007525 ORTHO05D003398 4.3e-77 292.0 214 65.9
RcHm_v2.0_Chr1g0357281 Rosa chinensis HOM05D007525 ORTHO05D003398 5.6e-77 291.6 246 58.5
ATR0661G217 Amborella trichopoda HOM05D007525 ORTHO05D003398 7.3e-77 291.2 193 68.4
CAN.G78.117 Capsicum annuum HOM05D007525 ORTHO05D003398 7.3e-77 291.2 185 72.4
Peaxi162Scf00020g00126 Petunia axillaris HOM05D007525 ORTHO05D003398 7.3e-77 291.2 182 71.4
TWI59G1390 Tripterygium wilfordii HOM05D007525 ORTHO05D003398 1.2e-76 290.4 216 65.7
Ah.05g180250 Amaranthus hybridus HOM05D007525 ORTHO05D003398 2.8e-76 289.3 194 68.0
MD01G1069500 Malus domestica HOM05D007525 ORTHO05D003398 3.6e-76 288.9 197 67.0
SGA_v2.0_scaffold43G16396 Striga asiatica HOM05D007525 ORTHO05D003398 3.6e-76 288.9 246 57.7
vmacro13241 Vaccinium macrocarpon HOM05D007525 ORTHO05D003398 6.2e-76 288.1 177 74.0
Eucgr.E00102 Eucalyptus grandis HOM05D007525 ORTHO05D003398 1.8e-75 286.6 200 65.5
Gohir.A07G140800 Gossypium hirsutum HOM05D007525 ORTHO05D003398 6.8e-75 284.6 213 63.4
Aqoxy7G00302 Aquilegia oxysepala HOM05D007525 ORTHO05D003398 3.4e-74 282.3 195 67.7
HPP92_021017 Vanilla planifolia HOM05D007525 ORTHO05D003398 2.2e-73 279.6 210 61.9
PSO478G5123 Papaver somniferum HOM05D007525 ORTHO05D003398 1.1e-72 277.3 218 62.8
Cc00_g17820 Coffea canephora HOM05D007525 ORTHO05D003398 2.4e-72 276.2 173 72.8
HanXRQChr03g0093451 Helianthus annuus HOM05D007525 ORTHO05D003398 2.7e-71 272.7 181 70.2
Zm00001eb073280 Zea mays HOM05D007525 ORTHO05D003398 3.5e-71 272.3 222 59.9
ECA240G1228 Erigeron canadensis HOM05D007525 ORTHO05D003398 6.0e-71 271.6 182 69.2
CDE12G0297 Ceratophyllum demersum HOM05D007525 ORTHO05D003398 5.1e-70 268.5 182 66.5
TPR.G28291 Trifolium pratense HOM05D007525 ORTHO05D003398 1.6e-68 263.5 166 72.9
Rhsim07G0011500 Rhododendron simsii HOM05D001943 ORTHO05D001969 4.8e-68 261.9 211 60.7
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.1e-67 259.2 221 57.5
AUR62004400 Chenopodium quinoa HOM05D007525 ORTHO05D003398 9.0e-67 257.7 194 62.9
QL04p055069 Quercus lobata HOM05D007525 ORTHO05D003398 1.7e-65 253.4 359 40.9
COL.COLO4_12762 Corchorus olitorius HOM05D007525 ORTHO05D003398 4.9e-65 251.9 192 62.5
Phvul.010G105000 Phaseolus vulgaris HOM05D007525 ORTHO05D003398 1.1e-64 250.8 178 67.4
Dinv32510 Davidia involucrata HOM05D003847 ORTHO05D004976 1.5e-58 230.3 125 79.2
MBI04_g26962_MAGBIO Magnolia biondii HOM05D007525 ORTHO05D003398 2.6e-58 229.6 174 65.5
Os04g0578200 Oryza sativa ssp. japonica HOM05D007525 ORTHO05D003398 2.6e-58 229.6 191 60.7
Haze_15550 Corylus avellana HOM05D007525 ORTHO05D003398 1.3e-57 227.3 229 53.3
Lsat_1_v5_gn_3_138380 Lactuca sativa HOM05D007525 ORTHO05D003398 3.8e-57 225.7 197 59.9
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 1.1e-56 224.2 154 68.2
Glyma.16G031100 Glycine max HOM05D007525 ORTHO05D003398 3.2e-56 222.6 175 62.9
DCAR_025212 Daucus carota HOM05D001555 ORTHO05D001616 7.4e-53 211.5 120 76.7
CARHR141360 Cardamine hirsuta HOM05D007525 ORTHO05D003398 1.2e-50 204.1 122 81.1
Sc23g0002640 Simmondsia chinensis HOM05D007525 ORTHO05D003398 4.2e-48 195.7 141 66.0
Mapoly0153s0018 Marchantia polymorpha HOM05D007525 ORTHO05D003398 1.1e-45 187.6 213 41.3
Sed0025619 Sechium edule HOM05D007525 ORTHO05D003398 1.5e-42 177.2 144 58.3
CBR_g31994 Chara braunii HOM05D007525 ORTHO05D003398 1.7e-41 173.7 218 40.8
Pp3c4_17920 Physcomitrium patens HOM05D007525 ORTHO05D003398 1.3e-38 164.1 220 40.9
SMO358G0422 Selaginella moellendorffii HOM05D007525 ORTHO05D003398 5.1e-38 162.2 178 43.3
AagrBONN_evm.TU.Sc2ySwM_228.1193 Anthoceros agrestis HOM05D007525 ORTHO05D003398 3.8e-33 146.0 161 43.5
MCO05G605 Micromonas commoda HOM05D007525 ORTHO05D003398 1.6e-31 140.6 176 40.9
SEGI_20701 Sequoiadendron giganteum HOM05D007525 ORTHO05D003398 7.7e-26 121.7 63 71.4
Cre06.g292400 Chlamydomonas reinhardtii HOM05D007525 ORTHO05D003398 1.3e-25 120.9 220 30.5
Zm00001eb250490 Zea mays HOM05D007525 ORTHO05D003398 1.8e-22 110.5 113 51.3
Manes.17G000837 Manihot esculenta HOM05D007525 ORTHO05D003398 3.7e-20 102.8 65 67.7
Cre10.g464250 Chlamydomonas reinhardtii HOM05D006905 ORTHO05D003398 5.3e-19 99.0 127 36.2
Mapoly0006s0024 Marchantia polymorpha HOM05D006905 ORTHO05D003398 9.1e-19 98.2 188 32.4
THA.LOC104802823 Tarenaya hassleriana HOM05D006905 ORTHO05D003398 1.2e-18 97.8 132 36.4
TAR636G1711 Trochodendron aralioides HOM05D006905 ORTHO05D003398 2.0e-18 97.1 133 36.8
CAN.G134.166 Capsicum annuum HOM05D006905 ORTHO05D003398 2.6e-18 96.7 205 31.7
PRCOL_00006625 Prasinoderma coloniale HOM05D007525 ORTHO05D003398 4.5e-18 95.9 133 34.6
Nitab4.5_0013433g0040 Nicotiana tabacum HOM05D006905 ORTHO05D003398 2.9e-17 93.2 131 34.4
PGSC0003DMG400022508 Solanum tuberosum HOM05D006905 ORTHO05D003398 2.9e-17 93.2 205 31.2
Migut.N01907 Erythranthe guttata HOM05D006905 ORTHO05D003398 5.0e-17 92.4 132 34.1
Atru.chr2.731 Acer truncatum HOM05D006905 ORTHO05D003398 6.5e-17 92.0 132 34.8
Pp3c24_12540 Physcomitrium patens HOM05D006905 ORTHO05D003398 6.5e-17 92.0 189 28.0
Solyc01g097820.4 Solanum lycopersicum HOM05D006905 ORTHO05D003398 6.5e-17 92.0 131 35.1
Sopen01g041420 Solanum pennellii HOM05D006905 ORTHO05D003398 6.5e-17 92.0 131 35.1
CARHR079160 Cardamine hirsuta HOM05D006905 ORTHO05D003398 8.5e-17 91.7 128 34.4
Lalb_Chr06g0167991 Lupinus albus HOM05D006905 ORTHO05D003398 8.5e-17 91.7 191 32.5
TWI56G1496 Tripterygium wilfordii HOM05D006905 ORTHO05D003398 8.5e-17 91.7 184 31.0
Aqoxy5G00478 Aquilegia oxysepala HOM05D006905 ORTHO05D003398 1.1e-16 91.3 185 31.4
Medtr4g037265 Medicago truncatula HOM05D007525 ORTHO05D003398 1.1e-16 91.3 54 75.9
Atru.chr2.743 Acer truncatum HOM05D006905 ORTHO05D003398 1.9e-16 90.5 132 34.8
AL3G15180 Arabidopsis lyrata HOM05D006905 ORTHO05D003398 1.9e-16 90.5 128 32.8
arahy.Tifrunner.gnm1.ann1.PI1FXK Arachis hypogaea HOM05D006905 ORTHO05D003398 1.9e-16 90.5 137 32.8
MBI04_g20814_MAGBIO Magnolia biondii HOM05D006905 ORTHO05D003398 2.5e-16 90.1 198 30.3
Eucgr.L02187 Eucalyptus grandis HOM05D006905 ORTHO05D003398 3.2e-16 89.7 199 30.2
Mapoly0016s0115 Marchantia polymorpha HOM05D006905 ORTHO05D003398 3.2e-16 89.7 132 34.1
Mapoly0178s0027 Marchantia polymorpha HOM05D006905 ORTHO05D003398 3.2e-16 89.7 132 34.1
THA.LOC104802824 Tarenaya hassleriana HOM05D006905 ORTHO05D003398 3.2e-16 89.7 142 33.8
AT3G04890 Arabidopsis thaliana HOM05D006905 ORTHO05D003398 4.2e-16 89.4 153 32.0
Phvul.007G186100 Phaseolus vulgaris HOM05D006905 ORTHO05D003398 4.2e-16 89.4 134 33.6
unitig_8.g4913 Utricularia gibba HOM05D006905 ORTHO05D003398 4.2e-16 89.4 131 32.8
Thhalv10021425m.g Eutrema salsugineum HOM05D006905 ORTHO05D003398 5.5e-16 89.0 138 34.1
Gorai.004G263200 Gossypium raimondii HOM05D006905 ORTHO05D003398 5.5e-16 89.0 134 34.3
Mapoly0059s0020 Marchantia polymorpha HOM05D006905 ORTHO05D003398 5.5e-16 89.0 132 34.1
Gohir.D08G246700 Gossypium hirsutum HOM05D006905 ORTHO05D003398 1.2e-15 87.8 134 34.3
Nitab4.5_0002361g0060 Nicotiana tabacum HOM05D006905 ORTHO05D003398 1.2e-15 87.8 131 33.6
Carub.0003s0409 Capsella rubella HOM05D006905 ORTHO05D003398 2.1e-15 87.0 128 33.6
Glyma.10G160600 Glycine max HOM05D006905 ORTHO05D003398 2.1e-15 87.0 174 29.9
Potri.013G036500 Populus trichocarpa HOM05D006905 ORTHO05D003398 2.1e-15 87.0 132 32.6
TPR.G11158 Trifolium pratense HOM05D006905 ORTHO05D003398 2.1e-15 87.0 132 34.1
VMungo0720G0828 Vigna mungo HOM05D006905 ORTHO05D003398 2.1e-15 87.0 134 32.8
BraA05t22982Z Brassica rapa HOM05D006905 ORTHO05D003398 2.7e-15 86.7 158 30.4
Duzib128G0775 Durio zibethinus HOM05D006905 ORTHO05D003398 3.6e-15 86.3 204 30.4
Nn4g26306 Nelumbo nucifera HOM05D006905 ORTHO05D003398 3.6e-15 86.3 133 33.8
Sp3g03710 Schrenkiella parvula HOM05D006905 ORTHO05D003398 3.6e-15 86.3 157 29.9
HanXRQChr12g0384101 Helianthus annuus HOM05D006905 ORTHO05D003398 4.7e-15 85.9 190 27.9
Manes.09G156000 Manihot esculenta HOM05D006905 ORTHO05D003398 4.7e-15 85.9 132 34.1
SGA_v2.0_scaffold5G02928 Striga asiatica HOM05D006905 ORTHO05D003398 4.7e-15 85.9 134 31.3
Ciclev10002392m.g Citrus clementina HOM05D006905 ORTHO05D003398 6.1e-15 85.5 141 34.0
ATR0737G167 Amborella trichopoda HOM05D006905 ORTHO05D003398 8.0e-15 85.1 132 31.8
BolC5t34896H Brassica oleracea HOM05D006905 ORTHO05D003398 8.0e-15 85.1 128 30.5
Thecc.05G193600 Theobroma cacao HOM05D006905 ORTHO05D003398 8.0e-15 85.1 211 29.4
Sed0006348 Sechium edule HOM05D006905 ORTHO05D003398 1.0e-14 84.7 160 31.9
A05p42710 Brassica napus HOM05D006905 ORTHO05D003398 1.4e-14 84.3 128 31.2
CsaV3_2G004310 Cucumis sativus L. HOM05D006905 ORTHO05D003398 1.4e-14 84.3 132 31.8
COL.COLO4_38037 Corchorus olitorius HOM05D006905 ORTHO05D003398 1.8e-14 84.0 137 32.8
SEGI_10814 Sequoiadendron giganteum HOM05D006905 ORTHO05D003398 1.8e-14 84.0 167 31.1
vmacro05070 Vaccinium macrocarpon HOM05D006905 ORTHO05D003398 2.3e-14 83.6 132 31.1
BcaC05g30566 Brassica carinata HOM05D006905 ORTHO05D003398 3.0e-14 83.2 127 29.9
Lsat_1_v5_gn_3_28040 Lactuca sativa HOM05D006905 ORTHO05D003398 6.7e-14 82.0 130 31.5
Hund22112 Selenicereus undatus HOM05D006905 ORTHO05D003398 6.7e-14 82.0 205 26.3
Zm00001eb036490 Zea mays HOM05D007525 ORTHO05D003398 1.2e-13 81.3 52 73.1
CANSAT54G0047 Cannabis sativa HOM05D006905 ORTHO05D003398 5.7e-13 79.0 135 30.4
TPR.G28505 Trifolium pratense HOM05D007525 ORTHO05D003398 1.4e-11 74.3 82 51.2
SMO146G0019 Selaginella moellendorffii HOM05D006905 ORTHO05D003398 7.0e-11 72.0 160 31.9
AagrBONN_evm.TU.Sc2ySwM_344.4395 Anthoceros agrestis HOM05D006905 ORTHO05D003398 9.1e-11 71.6 130 32.3
CBR_g23481 Chara braunii HOM05D006905 ORTHO05D003398 7.7e-10 68.6 183 24.0
Mapoly0011s0142 Marchantia polymorpha HOM05D006905 ORTHO05D003398 7.7e-10 68.6 126 31.0
MCO13G637 Micromonas commoda HOM05D006905 ORTHO05D003398 7.7e-10 68.6 135 27.4
AagrBONN_evm.TU.Sc2ySwM_117.1949 Anthoceros agrestis HOM05D006905 ORTHO05D003398 2.2e-09 67.0 155 27.7
TPR.G34652 Trifolium pratense HOM05D007525 ORTHO05D003398 8.5e-09 65.1 36 69.4
AUR62000979 Chenopodium quinoa HOM05D006905 ORTHO05D003398 1.5e-08 64.3 113 31.0
CSS0017923 Camellia sinensis var. sinensis HOM05D006905 ORTHO05D003398 3.2e-08 63.2 104 30.8
TPR.G20765 Trifolium pratense HOM05D007525 ORTHO05D003398 9.4e-08 61.6 36 66.7
PRCOL_00001703 Prasinoderma coloniale HOM05D007525 ORTHO05D003398 1.6e-07 60.8 138 28.3
Pp3c2_27980 Physcomitrium patens HOM05D006905 ORTHO05D003398 3.6e-07 59.7 132 25.8
arahy.Tifrunner.gnm1.ann1.N7GLTS Arachis hypogaea HOM05D006905 ORTHO05D003398 4.7e-07 59.3 127 26.8
CBR_g23482 Chara braunii HOM05D006905 ORTHO05D003398 4.7e-07 59.3 130 28.5
Medtr1g081280 Medicago truncatula HOM05D006905 ORTHO05D003398 8.0e-07 58.5 124 26.6
Lj5g0004067 Lotus japonicus HOM05D006905 ORTHO05D003398 1.4e-06 57.8 131 31.3
Rhsim07G0175500 Rhododendron simsii HOM05D006905 ORTHO05D003398 3.0e-06 56.6 134 32.1


User provided reference genes

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