Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 4.3e-144 514.6 257 100.0
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 2.9e-132 475.3 261 92.3
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 3.6e-122 441.8 261 85.1
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 2.8e-111 405.6 271 76.4
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 4.1e-110 401.7 275 76.0
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 8.5e-108 394.0 268 78.4
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 1.0e-92 344.0 263 70.7
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 6.6e-92 341.3 263 70.0
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 3.9e-84 315.5 270 67.8
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 3.9e-84 315.5 270 67.8
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 7.3e-83 311.2 271 63.5
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 4.7e-82 308.5 261 66.7
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 4.7e-82 308.5 261 66.7
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 3.4e-80 302.4 258 64.7
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 1.8e-73 280.0 263 61.2
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.3e-71 273.9 267 55.8
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 8.4e-63 244.6 251 51.0
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 4.0e-57 225.7 285 47.0
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 1.3e-55 220.7 310 44.2
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.9e-54 216.9 277 44.8
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 3.2e-54 216.1 304 44.7
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 5.4e-54 215.3 291 47.4
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 5.4e-54 215.3 272 43.0
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 7.1e-54 214.9 311 44.1
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 2.1e-53 213.4 294 45.9
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 2.1e-53 213.4 295 44.4
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 2.7e-53 213.0 301 43.9
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 6.0e-53 211.8 315 46.7
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 1.3e-52 210.7 300 45.0
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 3.9e-52 209.1 290 49.0
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 8.7e-52 208.0 311 40.2
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 3.3e-51 206.1 304 45.1
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 4.3e-51 205.7 301 43.2
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 5.6e-51 205.3 301 43.9
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 5.6e-51 205.3 310 40.6
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 7.4e-51 204.9 315 41.6
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 1.3e-50 204.1 316 43.4
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 3.7e-50 202.6 310 39.7
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 4.8e-50 202.2 286 44.1
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 6.2e-50 201.8 288 43.4
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 1.1e-49 201.1 313 42.8
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 1.8e-49 200.3 316 43.4
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 1.8e-49 200.3 306 41.2
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 2.4e-49 199.9 287 43.6
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 5.3e-49 198.7 300 41.3
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 1.5e-48 197.2 302 42.7
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 2.6e-48 196.4 314 40.4
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 2.6e-48 196.4 311 41.5
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 3.4e-48 196.1 315 41.0
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 3.4e-48 196.1 289 43.3
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 3.4e-48 196.1 314 39.5
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 4.5e-48 195.7 285 44.2
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 4.5e-48 195.7 310 41.0
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 5.8e-48 195.3 283 43.8
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 9.9e-48 194.5 305 41.3
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 9.9e-48 194.5 320 41.2
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 1.3e-47 194.1 316 42.4
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 1.3e-47 194.1 315 42.9
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 1.3e-47 194.1 299 41.8
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 1.7e-47 193.7 279 44.1
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 1.7e-47 193.7 318 41.8
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.7e-47 193.7 318 41.8
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 2.2e-47 193.4 262 45.8
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 6.4e-47 191.8 315 41.6
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 8.4e-47 191.4 318 41.5
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 8.4e-47 191.4 312 40.7
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 8.4e-47 191.4 316 41.1
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 1.1e-46 191.0 312 38.5
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.9e-46 190.3 318 41.2
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 1.9e-46 190.3 303 41.6
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 1.9e-46 190.3 301 41.9
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 2.4e-46 189.9 318 41.2
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 2.4e-46 189.9 320 40.0
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 2.4e-46 189.9 314 39.5
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 1.2e-45 187.6 309 41.1
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 1.6e-45 187.2 309 38.2
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 2.1e-45 186.8 318 40.9
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 3.5e-45 186.0 276 39.5
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 6.0e-45 185.3 300 40.7
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 7.9e-45 184.9 311 40.2
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 7.9e-45 184.9 335 37.3
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 1.0e-44 184.5 313 40.9
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 1.0e-44 184.5 301 41.5
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 1.3e-44 184.1 300 39.7
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 1.3e-44 184.1 298 41.6
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.3e-44 184.1 242 45.5
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 1.8e-44 183.7 299 42.8
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 2.3e-44 183.3 311 40.5
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 2.3e-44 183.3 296 41.2
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 3.0e-44 183.0 300 41.7
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 3.0e-44 183.0 298 38.6
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 3.0e-44 183.0 312 38.1
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 3.9e-44 182.6 321 38.6
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 5.1e-44 182.2 267 41.9
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 5.1e-44 182.2 281 44.5
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 1.9e-43 180.3 279 40.1
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 1.9e-43 180.3 316 39.9
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 1.9e-43 180.3 312 38.5
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 2.5e-43 179.9 265 43.0
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 4.3e-43 179.1 306 39.5
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 5.6e-43 178.7 309 38.8
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 9.6e-43 177.9 283 41.3
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 4.8e-42 175.6 305 40.0
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 5.3e-41 172.2 335 35.8
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 9.0e-41 171.4 283 40.6
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.2e-40 171.0 308 35.1
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 1.5e-40 170.6 241 48.5
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 1.5e-40 170.6 278 38.5
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 2.6e-40 169.9 283 39.6
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 4.5e-40 169.1 313 36.7
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 1.3e-39 167.5 282 38.7
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 2.2e-39 166.8 325 36.9
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 3.8e-39 166.0 236 41.9
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 1.4e-38 164.1 286 37.8
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 9.3e-38 161.4 286 38.8
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 1.6e-37 160.6 311 34.1
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 2.1e-37 160.2 316 36.7
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 4.6e-37 159.1 299 39.8
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 4.6e-37 159.1 315 34.6
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 1.3e-36 157.5 272 39.7
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 3.9e-36 156.0 281 38.1
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 6.7e-36 155.2 311 35.4
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 8.7e-36 154.8 229 44.1
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 1.1e-35 154.5 243 41.6
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 1.5e-35 154.1 283 37.5
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 1.9e-35 153.7 276 38.8
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 5.7e-35 152.1 280 38.6
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 7.4e-35 151.8 265 38.9
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 9.7e-35 151.4 279 38.4
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 9.7e-35 151.4 259 35.9
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 2.1e-34 150.2 276 38.4
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 1.8e-33 147.1 278 38.1
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 1.8e-33 147.1 213 41.3
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 3.1e-33 146.4 261 40.6
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 1.5e-32 144.1 276 37.7
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 1.5e-32 144.1 276 37.7
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 4.5e-32 142.5 310 33.9
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 7.6e-32 141.7 264 38.3
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 1.7e-31 140.6 307 35.5
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 2.2e-31 140.2 264 36.4
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 3.8e-31 139.4 276 36.6
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 1.9e-30 137.1 286 38.5
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 4.2e-30 136.0 259 37.1
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 4.6e-29 132.5 281 33.5
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 2.3e-28 130.2 284 34.9
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 1.9e-27 127.1 300 36.7
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 2.2e-26 123.6 250 36.0
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 1.8e-25 120.6 226 35.8
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 6.9e-25 118.6 234 32.9
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 1.5e-24 117.5 234 35.5
C04p06870 Brassica napus HOM05D001925 ORTHO05D004257 1.5e-24 117.5 69 87.0
BolC4t22309H Brassica oleracea HOM05D001925 ORTHO05D004257 1.5e-24 117.5 69 87.0
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 2.0e-24 117.1 279 31.9
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 4.5e-24 115.9 262 35.5
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 1.0e-23 114.8 175 37.7
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 1.3e-23 114.4 229 35.8
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 2.9e-23 113.2 281 31.3
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 8.5e-23 111.7 107 48.6
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 1.1e-22 111.3 290 30.3
A05p05940 Brassica napus HOM05D001925 ORTHO05D004257 1.9e-22 110.5 65 86.2
BraA05t19557Z Brassica rapa HOM05D001925 ORTHO05D004257 1.9e-22 110.5 65 86.2
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 1.9e-22 110.5 311 30.9
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 7.2e-22 108.6 269 36.8
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 2.1e-21 107.1 325 30.8
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.1e-19 101.3 278 30.2
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 1.5e-19 100.9 151 41.7
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 5.7e-19 99.0 151 37.7
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 5.7e-19 99.0 269 31.6
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 3.7e-18 96.3 245 29.4
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 1.8e-17 94.0 295 30.8
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 2.6e-16 90.1 242 30.6
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 7.7e-16 88.6 351 25.1
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 7.7e-16 88.6 224 35.3
Os07g0418200 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 2.9e-15 86.7 240 29.6
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 3.8e-15 86.3 197 31.0
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 3.8e-15 86.3 200 31.5
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 1.4e-14 84.3 229 27.1
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 1.6e-13 80.9 135 37.8
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 3.6e-13 79.7 89 57.3
BcaC02g12160 Brassica carinata HOM05D001925 ORTHO05D004257 2.6e-11 73.6 101 47.5
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 5.3e-09 65.9 72 43.1
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 7.0e-09 65.5 72 43.1
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.2e-08 64.7 134 30.6
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.3e-07 61.2 89 39.3
SEGI_37364 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 5.0e-07 59.3 188 28.7


User provided reference genes

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