Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G45520 Arabidopsis thaliana HOM05D006684 ORTHO05D008443 5.4e-97 357.8 206 100.0
AL4G44700 Arabidopsis lyrata HOM05D006684 ORTHO05D008443 1.3e-90 336.7 206 88.3
Carub.0004s2814 Capsella rubella HOM05D006684 ORTHO05D008443 1.8e-76 289.7 216 80.1
Sp4g27550 Schrenkiella parvula HOM05D006684 ORTHO05D008443 2.6e-75 285.8 238 68.5
Thhalv10001611m.g Eutrema salsugineum HOM05D006684 ORTHO05D008443 1.0e-74 283.9 239 72.4
CARHR140710 Cardamine hirsuta HOM05D006684 ORTHO05D008443 5.7e-70 268.1 238 71.8
C04p71620 Brassica napus HOM05D000147 ORTHO05D007841 2.4e-68 262.7 230 68.3
BcaB06g29418 Brassica carinata HOM05D006684 ORTHO05D008443 3.1e-68 262.3 239 64.9
BolC4t28667H Brassica oleracea HOM05D000147 ORTHO05D007841 3.4e-67 258.8 233 65.2
BcaC02g07085 Brassica carinata HOM05D006684 ORTHO05D008443 1.0e-66 257.3 236 66.1
BraA04t18849Z Brassica rapa HOM05D000147 ORTHO05D007841 6.5e-66 254.6 233 64.4
BolC4t22271H Brassica oleracea HOM05D006684 ORTHO05D008443 1.4e-63 246.9 207 68.1
Aa31LG1G27020 Aethionema arabicum HOM05D006684 ORTHO05D008443 9.7e-62 240.7 232 68.1
A04p33890 Brassica napus HOM05D000147 ORTHO05D007841 2.4e-60 236.1 233 61.4
BraA05t19524Z Brassica rapa HOM05D006684 ORTHO05D008443 5.0e-58 228.4 198 66.7
THA.LOC104801995 Tarenaya hassleriana HOM05D006684 ORTHO05D008443 9.7e-46 187.6 237 51.5
Cpa.g.sc18.149 Carica papaya HOM05D006684 ORTHO05D008443 1.5e-41 173.7 231 46.3
Sed0022399 Sechium edule HOM05D006684 ORTHO05D008443 3.2e-41 172.6 231 48.5
MELO3C022508.2 Cucumis melo HOM05D006684 ORTHO05D008443 7.2e-41 171.4 231 46.3
CsaV3_6G006090 Cucumis sativus L. HOM05D006684 ORTHO05D008443 6.1e-40 168.3 229 55.0
C04p06480 Brassica napus HOM05D000921 ORTHO05D002852 8.0e-40 167.9 115 77.4
GSVIVG01027546001 Vitis vinifera HOM05D006684 ORTHO05D008443 1.4e-39 167.2 239 46.4
Atru.chr5.338 Acer truncatum HOM05D006684 ORTHO05D008443 8.8e-39 164.5 227 49.3
Prupe.2G148900 Prunus persica HOM05D006684 ORTHO05D008443 2.6e-38 162.9 221 49.3
COL.COLO4_12585 Corchorus olitorius HOM05D006684 ORTHO05D008443 1.3e-37 160.6 216 47.7
CiPaw.01G260000 Carya illinoinensis HOM05D006684 ORTHO05D008443 2.8e-37 159.5 219 47.0
Ciclev10022036m.g Citrus clementina HOM05D006684 ORTHO05D008443 5.4e-36 155.2 231 45.5
FAN01G2432 Fragaria x ananassa HOM05D006684 ORTHO05D008443 9.1e-36 154.5 221 47.1
Hund17005 Selenicereus undatus HOM05D006684 ORTHO05D008443 1.2e-35 154.1 235 46.8
FvH4_7g12340 Fragaria vesca HOM05D006684 ORTHO05D008443 1.6e-35 153.7 222 50.5
FAN06G2821 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.6e-35 153.7 222 50.5
FAN06G3889 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.6e-35 153.7 222 50.5
QL08p051764 Quercus lobata HOM05D006684 ORTHO05D008443 2.0e-35 153.3 233 52.4
FAN10G0264 Fragaria x ananassa HOM05D006684 ORTHO05D008443 3.5e-35 152.5 222 50.0
MD02G1199700 Malus domestica HOM05D006684 ORTHO05D008443 4.5e-35 152.1 221 55.7
RcHm_v2.0_Chr1g0351131 Rosa chinensis HOM05D006684 ORTHO05D008443 1.3e-34 150.6 219 48.9
TAR636G0929 Trochodendron aralioides HOM05D006684 ORTHO05D008443 1.7e-34 150.2 239 41.8
FAN10G2097 Fragaria x ananassa HOM05D006684 ORTHO05D008443 2.9e-34 149.4 224 52.2
Cfa010232 Carpinus fangiana HOM05D006684 ORTHO05D008443 3.8e-34 149.1 224 49.1
CANSAT94G0012 Cannabis sativa HOM05D006684 ORTHO05D008443 6.5e-34 148.3 224 49.1
ClCG06G000300 Citrullus lanatus HOM05D006684 ORTHO05D008443 6.5e-34 148.3 278 42.4
FAN03G1779 Fragaria x ananassa HOM05D006684 ORTHO05D008443 4.2e-33 145.6 233 48.1
LjContig00136g0018410 Lotus japonicus HOM05D006684 ORTHO05D008443 4.2e-33 145.6 211 46.9
Duzib133G0994 Durio zibethinus HOM05D006684 ORTHO05D008443 5.5e-33 145.2 204 45.6
Glyma.09G267200 Glycine max HOM05D006684 ORTHO05D008443 2.8e-32 142.9 228 42.5
Thecc.01G373000 Theobroma cacao HOM05D006684 ORTHO05D008443 6.1e-32 141.7 225 42.2
EL10Ac1g00926 Beta vulgaris HOM05D006684 ORTHO05D008443 8.0e-32 141.4 236 43.6
Dinv32395 Davidia involucrata HOM05D006684 ORTHO05D008443 1.8e-31 140.2 239 42.7
CSS0020305 Camellia sinensis var. sinensis HOM05D006684 ORTHO05D008443 2.3e-31 139.8 233 42.5
TWI59G0969 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 3.0e-31 139.4 217 42.9
Lalb_Chr03g0039091 Lupinus albus HOM05D006684 ORTHO05D008443 1.2e-30 137.5 226 44.2
Aqoxy7G00540 Aquilegia oxysepala HOM05D006684 ORTHO05D008443 1.3e-29 134.0 241 41.5
ECA240G0119 Erigeron canadensis HOM05D006684 ORTHO05D008443 1.3e-29 134.0 217 47.0
Gohir.D11G086900 Gossypium hirsutum HOM05D006684 ORTHO05D008443 1.3e-29 134.0 222 40.5
Gorai.007G092800 Gossypium raimondii HOM05D006684 ORTHO05D008443 1.3e-29 134.0 222 40.1
PSO478G1842 Papaver somniferum HOM05D006684 ORTHO05D008443 1.3e-29 134.0 246 45.5
Gohir.A11G082800 Gossypium hirsutum HOM05D006684 ORTHO05D008443 1.7e-29 133.7 221 41.6
Manes.05G043400 Manihot esculenta HOM05D006684 ORTHO05D008443 2.8e-29 132.9 234 44.9
Nn6g34351 Nelumbo nucifera HOM05D006684 ORTHO05D008443 8.3e-29 131.3 237 38.0
HanXRQChr03g0093671 Helianthus annuus HOM05D006684 ORTHO05D008443 9.2e-28 127.9 223 45.3
Manes.12G048300 Manihot esculenta HOM05D006684 ORTHO05D008443 1.6e-27 127.1 216 39.8
Duzib138G0092 Durio zibethinus HOM05D006684 ORTHO05D008443 1.3e-26 124.0 107 62.6
PGSC0003DMG400021635 Solanum tuberosum HOM05D006684 ORTHO05D008443 1.7e-26 123.6 218 40.4
Sopen05g028070 Solanum pennellii HOM05D006684 ORTHO05D008443 5.0e-26 122.1 221 38.5
arahy.Tifrunner.gnm1.ann1.3Z62KU Arachis hypogaea HOM05D006684 ORTHO05D008443 8.6e-26 121.3 226 41.6
CDE04G1869 Ceratophyllum demersum HOM05D006684 ORTHO05D008443 8.6e-26 121.3 235 39.1
Nitab4.5_0010110g0010 Nicotiana tabacum HOM05D006684 ORTHO05D008443 8.6e-26 121.3 219 39.3
PGR042G1390 Punica granatum HOM05D006684 ORTHO05D008443 8.6e-26 121.3 238 38.7
SGA_v2.0_scaffold11G05605 Striga asiatica HOM05D006684 ORTHO05D008443 1.5e-25 120.6 225 44.9
VMungo1383G3715 Vigna mungo HOM05D006684 ORTHO05D008443 1.5e-25 120.6 228 41.2
Sc02g0002410 Simmondsia chinensis HOM05D006684 ORTHO05D008443 7.3e-25 118.2 111 55.0
arahy.Tifrunner.gnm1.ann1.CFQ18P Arachis hypogaea HOM05D006684 ORTHO05D008443 1.6e-24 117.1 226 41.6
Manes.12G053501 Manihot esculenta HOM05D006684 ORTHO05D008443 2.8e-24 116.3 212 46.7
Lsat_1_v5_gn_3_135520 Lactuca sativa HOM05D006684 ORTHO05D008443 3.6e-24 115.9 224 44.2
Eucgr.E01357 Eucalyptus grandis HOM05D006684 ORTHO05D008443 4.7e-24 115.5 236 37.3
Phvul.008G074700 Phaseolus vulgaris HOM05D006684 ORTHO05D008443 8.0e-24 114.8 228 39.5
Cc02_g36430 Coffea canephora HOM05D006684 ORTHO05D008443 1.4e-23 114.0 229 38.0
Manes.12G048301 Manihot esculenta HOM05D006684 ORTHO05D008443 1.8e-23 113.6 212 46.7
Potri.014G072400 Populus trichocarpa HOM05D006684 ORTHO05D008443 4.0e-23 112.5 218 40.8
Os06g0129800 Oryza sativa ssp. japonica HOM05D006684 ORTHO05D008443 1.2e-22 110.9 233 38.2
TPR.G37765 Trifolium pratense HOM05D006684 ORTHO05D008443 1.2e-22 110.9 206 37.9
PSO782G3084 Papaver somniferum HOM05D006684 ORTHO05D008443 2.6e-22 109.8 114 59.6
AUR62004244 Chenopodium quinoa HOM05D006684 ORTHO05D008443 3.4e-22 109.4 216 39.8
MSTRG.4882 Avicennia marina HOM05D006684 ORTHO05D008443 7.5e-22 108.2 229 35.8
Ah.07g198740 Amaranthus hybridus HOM05D006684 ORTHO05D008443 4.9e-21 105.5 195 38.5
Rhsim01G0161500 Rhododendron simsii HOM05D006684 ORTHO05D008443 6.4e-21 105.1 114 53.5
Medtr7g075640 Medicago truncatula HOM05D006684 ORTHO05D008443 3.2e-20 102.8 209 40.7
Duzib138G0657 Durio zibethinus HOM05D006684 ORTHO05D008443 5.4e-20 102.1 132 47.0
Peaxi162Scf00207g00165 Petunia axillaris HOM05D006684 ORTHO05D008443 1.6e-19 100.5 230 39.6
Zm00001eb378390 Zea mays HOM05D006684 ORTHO05D008443 1.6e-19 100.5 233 36.1
CAN.G333.1 Capsicum annuum HOM05D006684 ORTHO05D008443 3.5e-19 99.4 223 44.4
vmacro20994 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 4.6e-19 99.0 107 56.1
Migut.N01586 Erythranthe guttata HOM05D006684 ORTHO05D008443 1.3e-18 97.4 104 54.8
AUR62013604 Chenopodium quinoa HOM05D006684 ORTHO05D008443 3.9e-18 95.9 230 36.5
Hma1.2p1_0053F.1_g030880 Hydrangea macrophylla HOM05D006684 ORTHO05D008443 5.0e-18 95.5 237 35.9
Nitab4.5_0001702g0200 Nicotiana tabacum HOM05D006684 ORTHO05D008443 5.0e-18 95.5 223 42.6
SalBow5G0966 Salvia bowleyana HOM05D006684 ORTHO05D008443 1.2e-16 90.9 228 35.5
SMO347G0023 Selaginella moellendorffii HOM05D006684 ORTHO05D008443 8.0e-16 88.2 195 35.4
SalBow5G5079 Salvia bowleyana HOM05D006684 ORTHO05D008443 2.3e-15 86.7 228 34.6
Solyc05g048750.3 Solanum lycopersicum HOM05D006684 ORTHO05D008443 4.0e-15 85.9 109 52.3
SEGI_35511 Sequoiadendron giganteum HOM05D006684 ORTHO05D008443 6.8e-15 85.1 242 33.5
TWI23G1019 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 2.0e-14 83.6 107 50.5
ATR0757G101 Amborella trichopoda HOM05D006684 ORTHO05D008443 4.4e-14 82.4 92 51.1
vmacro20995 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 5.8e-14 82.0 79 55.7
Haze_16739 Corylus avellana HOM05D006684 ORTHO05D008443 1.3e-13 80.9 60 61.7
Oeu036610.1 Olea europaea HOM05D006684 ORTHO05D008443 1.3e-13 80.9 82 51.2
Ca_07836_v3 Cicer arietinum L. HOM05D006684 ORTHO05D008443 2.9e-13 79.7 56 66.1
unitig_578.g16483 Utricularia gibba HOM05D006684 ORTHO05D008443 1.4e-12 77.4 110 48.2
Pp3c22_10350 Physcomitrium patens HOM05D006684 ORTHO05D008443 6.0e-11 72.0 234 30.3
Actinidia33456 Actinidia chinensis HOM05D006684 ORTHO05D008443 1.3e-10 70.9 49 67.3
A05p05540 Brassica napus HOM05D006684 ORTHO05D008443 1.1e-09 67.8 69 58.0
MBI12_g38018_MAGBIO Magnolia biondii HOM05D006684 ORTHO05D008443 1.1e-09 67.8 69 49.3
Mapoly0084s0081 Marchantia polymorpha HOM05D006684 ORTHO05D008443 1.1e-09 67.8 230 31.3
Haze_16738 Corylus avellana HOM05D006684 ORTHO05D008443 1.9e-09 67.0 56 60.7
Psat3g104080 Pisum sativum HOM05D006684 ORTHO05D008443 2.5e-09 66.6 89 43.8
Zm00001eb269540 Zea mays HOM05D006684 ORTHO05D008443 2.1e-08 63.5 92 45.7
AagrBONN_evm.TU.Sc2ySwM_344.4110 Anthoceros agrestis HOM05D006684 ORTHO05D008443 5.2e-07 58.9 233 27.5
SGA_v2.0_scaffold43G16466 Striga asiatica HOM05D006684 ORTHO05D008443 5.2e-07 58.9 155 33.5
HPP92_020257 Vanilla planifolia HOM05D006684 ORTHO05D008443 9.9e-06 54.7 128 35.2


User provided reference genes

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