Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 5.9e-225 783.9 393 100.0
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 1.2e-206 723.0 384 95.1
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 3.8e-200 701.4 393 89.8
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 6.1e-198 694.1 393 87.3
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 2.7e-193 678.7 394 86.3
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 2.9e-192 675.2 396 85.6
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 2.1e-190 669.1 395 84.8
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 6.1e-190 667.5 396 84.3
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 3.0e-189 665.2 395 84.3
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 1.1e-183 646.7 395 82.3
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 1.1e-183 646.7 395 82.3
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 1.2e-172 610.1 399 77.7
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 1.1e-146 523.9 408 64.7
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 2.4e-146 522.7 392 67.1
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 2.7e-145 519.2 408 64.7
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 6.0e-145 518.1 396 68.4
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 1.0e-144 517.3 391 66.2
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 1.7e-144 516.5 402 64.9
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 2.3e-144 516.2 408 63.5
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 5.1e-144 515.0 409 64.5
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 1.5e-143 513.5 391 66.2
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 1.9e-143 513.1 392 65.8
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 4.3e-143 511.9 375 68.8
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 4.3e-143 511.9 387 66.7
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 5.6e-143 511.5 392 66.6
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 2.8e-142 509.2 393 66.4
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 3.6e-142 508.8 391 66.0
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 6.2e-142 508.1 392 67.1
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 1.1e-141 507.3 394 65.0
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.1e-141 507.3 391 65.5
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 1.4e-141 506.9 389 66.3
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 1.8e-141 506.5 391 65.7
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 1.8e-141 506.5 392 66.3
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 2.4e-141 506.1 387 65.6
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 3.1e-141 505.8 391 66.5
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 4.0e-141 505.4 356 71.3
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 5.3e-141 505.0 387 65.4
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 6.9e-141 504.6 388 65.5
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 9.0e-141 504.2 391 65.0
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 9.0e-141 504.2 391 65.2
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 1.5e-140 503.4 398 64.8
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 2.0e-140 503.1 387 65.1
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 3.4e-140 502.3 391 65.5
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 7.6e-140 501.1 387 64.6
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 7.6e-140 501.1 393 65.1
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 9.9e-140 500.7 391 66.0
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 1.3e-139 500.4 390 64.6
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 2.2e-139 499.6 388 64.4
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 2.2e-139 499.6 387 64.6
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 3.8e-139 498.8 388 66.0
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 8.4e-139 497.7 413 62.0
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 8.4e-139 497.7 390 64.9
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 1.4e-138 496.9 387 64.3
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 1.9e-138 496.5 396 64.4
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 1.9e-138 496.5 388 64.4
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 2.4e-138 496.1 390 64.1
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 4.2e-138 495.4 396 64.4
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 4.2e-138 495.4 344 71.5
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 7.1e-138 494.6 390 64.1
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 9.3e-138 494.2 388 63.9
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 1.6e-137 493.4 406 63.1
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 2.7e-137 492.7 390 63.8
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 2.7e-137 492.7 422 61.1
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 6.0e-137 491.5 398 64.3
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 7.9e-137 491.1 389 63.5
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 5.1e-136 488.4 390 63.6
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 6.7e-136 488.0 390 63.6
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 8.7e-136 487.6 374 66.0
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 1.1e-135 487.3 390 63.1
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 1.1e-135 487.3 389 63.2
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 2.5e-135 486.1 344 69.8
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 3.3e-135 485.7 379 65.2
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 1.6e-134 483.4 389 61.7
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 8.1e-134 481.1 391 62.4
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 1.1e-133 480.7 390 64.4
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 6.9e-133 478.0 345 68.1
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 1.5e-132 476.9 389 60.7
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 3.4e-132 475.7 391 63.4
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 7.6e-132 474.6 392 63.0
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 3.8e-131 472.2 378 65.6
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 4.9e-131 471.9 345 67.0
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 2.5e-127 459.5 387 60.7
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 7.4e-127 458.0 391 60.9
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 1.3e-126 457.2 349 67.0
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 1.5e-124 450.3 377 60.7
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 3.4e-124 449.1 390 62.6
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 3.8e-123 445.7 344 65.4
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 6.5e-123 444.9 418 57.7
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 1.4e-122 443.7 335 64.8
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 1.9e-122 443.4 391 59.8
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 1.2e-121 440.7 358 62.0
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 8.7e-120 434.5 348 64.1
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 5.0e-115 418.7 421 54.4
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 7.2e-114 414.8 380 58.4
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 7.9e-113 411.4 337 64.4
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 7.4e-111 404.8 263 74.9
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 6.9e-109 398.3 301 66.1
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 1.4e-106 390.6 200 95.0
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 3.3e-103 379.4 342 57.0
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 8.2e-102 374.8 195 91.3
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 4.5e-100 369.0 251 70.5
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 3.2e-98 362.8 305 61.6
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 2.4e-93 346.7 383 49.1
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 2.0e-87 327.0 274 59.9
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 3.5e-84 316.2 248 64.1
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 5.5e-82 308.9 194 84.0
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 2.6e-79 300.1 322 50.3
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 4.2e-74 282.7 163 80.4
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 3.4e-71 273.1 280 48.6
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 4.7e-65 252.7 226 61.5
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 2.0e-63 247.3 187 64.2
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 7.0e-61 238.8 218 57.8
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 3.3e-58 229.9 193 63.2
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 3.1e-56 223.4 130 77.7
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 2.2e-54 217.2 219 47.0
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 5.6e-50 202.6 346 36.7
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 3.2e-45 186.8 113 73.5
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 1.8e-40 171.0 132 61.4
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 2.4e-40 170.6 132 61.4
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 1.2e-39 168.3 131 60.3
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 1.9e-37 161.0 135 63.0
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 1.3e-30 138.3 161 47.8
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 1.3e-30 138.3 237 35.4
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 4.6e-28 129.8 197 39.6
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 7.8e-28 129.0 182 44.0
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 1.3e-27 128.3 84 72.6
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 1.1e-24 118.6 63 85.7
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 2.4e-24 117.5 108 54.6
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 3.4e-23 113.6 74 70.3
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 9.9e-23 112.1 97 62.9
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 1.9e-18 97.8 96 55.2
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 5.6e-18 96.3 72 68.1
MD15G1255900 Malus domestica HOM05D001392 ORTHO05D036605 5.8e-15 86.3 45 82.2
Lalb_Chr08g0243441 Lupinus albus HOM05D005612 ORTHO05D007014 4.6e-12 76.6 45 71.1
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 1.0e-11 75.5 91 50.5
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 3.0e-11 73.9 59 59.3
Lalb_Chr16g0388221 Lupinus albus HOM05D005612 ORTHO05D007014 4.5e-07 60.1 35 65.7


User provided reference genes

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