Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G45250 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 1.6e-93 346.3 205 100.0
AT4G38280 Arabidopsis thaliana HOM05D003937 ORTHO05D004583 7.4e-70 267.7 175 84.0
Carub.0007s0022 Capsella rubella HOM05D003937 ORTHO05D004583 4.2e-49 198.7 184 64.7
AL7G10200 Arabidopsis lyrata HOM05D003937 ORTHO05D004583 1.8e-47 193.4 169 75.7
Thhalv10026442m.g Eutrema salsugineum HOM05D003937 ORTHO05D004583 2.9e-42 176.0 171 61.4
Sp7g37440 Schrenkiella parvula HOM05D003937 ORTHO05D004583 5.0e-42 175.3 177 59.3
Aa31LG6G16740 Aethionema arabicum HOM05D003937 ORTHO05D004583 1.7e-37 160.2 166 59.0
BraA08t34322Z Brassica rapa HOM05D003937 ORTHO05D004583 8.0e-32 141.4 150 58.7
BcaB03g12256 Brassica carinata HOM05D003937 ORTHO05D004583 5.7e-30 135.2 147 59.2
A08p23700 Brassica napus HOM05D003937 ORTHO05D004583 3.5e-27 125.9 150 59.3
C03p77740 Brassica napus HOM05D003937 ORTHO05D004583 7.7e-27 124.8 150 59.3
BolC3t20032H Brassica oleracea HOM05D003937 ORTHO05D004583 1.7e-26 123.6 132 62.9
CARHR294070 Cardamine hirsuta HOM05D003937 ORTHO05D004583 2.3e-23 113.2 111 61.3
Gohir.A03G209600 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.0e-22 110.2 82 68.3
Gohir.D02G231300 Gossypium hirsutum HOM05D003937 ORTHO05D004583 2.0e-22 110.2 82 68.3
Manes.04G067300 Manihot esculenta HOM05D003937 ORTHO05D004583 5.7e-22 108.6 240 37.9
Ca_16692_v3 Cicer arietinum L. HOM05D003937 ORTHO05D004583 1.7e-21 107.1 224 37.1
Psat5g000520 Pisum sativum HOM05D003937 ORTHO05D004583 1.7e-21 107.1 138 47.8
Glyma.04G000700 Glycine max HOM05D003937 ORTHO05D004583 2.8e-21 106.3 80 67.5
Sed0010938 Sechium edule HOM05D003937 ORTHO05D004583 2.8e-21 106.3 225 36.4
Ciclev10028873m.g Citrus clementina HOM05D003937 ORTHO05D004583 4.8e-21 105.5 215 36.3
Glyma.06G000500 Glycine max HOM05D003937 ORTHO05D004583 4.8e-21 105.5 80 67.5
Medtr3g118500 Medicago truncatula HOM05D003937 ORTHO05D004583 4.8e-21 105.5 78 66.7
VMungo0540G0354 Vigna mungo HOM05D003937 ORTHO05D004583 4.8e-21 105.5 75 72.0
Duzib052G0838 Durio zibethinus HOM05D003937 ORTHO05D004583 8.3e-21 104.8 82 64.6
Gohir.A01G174900 Gossypium hirsutum HOM05D003937 ORTHO05D004583 8.3e-21 104.8 82 62.2
Gorai.005G258900 Gossypium raimondii HOM05D003937 ORTHO05D004583 3.1e-20 102.8 82 64.6
CsaV3_6G010160 Cucumis sativus L. HOM05D003937 ORTHO05D004583 4.1e-20 102.4 76 68.4
ClCG02G009960 Citrullus lanatus HOM05D003937 ORTHO05D004583 7.0e-20 101.7 77 67.5
Gohir.D01G166000 Gossypium hirsutum HOM05D003937 ORTHO05D004583 9.1e-20 101.3 82 62.2
Gorai.002G206500 Gossypium raimondii HOM05D003937 ORTHO05D004583 9.1e-20 101.3 82 62.2
Phvul.006G042500 Phaseolus vulgaris HOM05D003937 ORTHO05D004583 9.1e-20 101.3 79 67.1
TPR.G38537 Trifolium pratense HOM05D003937 ORTHO05D004583 9.1e-20 101.3 78 65.4
CANSAT25G1327 Cannabis sativa HOM05D003937 ORTHO05D004583 5.9e-19 98.6 81 60.5
Cpa.g.sc20.204 Carica papaya HOM05D003937 ORTHO05D004583 5.9e-19 98.6 82 64.6
Duzib132G1231 Durio zibethinus HOM05D003937 ORTHO05D004583 5.9e-19 98.6 80 62.5
AUR62011702 Chenopodium quinoa HOM05D003937 ORTHO05D004583 1.7e-18 97.1 81 58.0
Thecc.02G044800 Theobroma cacao HOM05D003937 ORTHO05D004583 1.7e-18 97.1 82 59.8
EL10Ac9g21245 Beta vulgaris HOM05D003937 ORTHO05D004583 2.3e-18 96.7 209 33.0
AUR62012919 Chenopodium quinoa HOM05D003937 ORTHO05D004583 2.3e-18 96.7 81 58.0
COL.COLO4_17933 Corchorus olitorius HOM05D003937 ORTHO05D004583 2.3e-18 96.7 226 31.9
FvH4_2g16620 Fragaria vesca HOM05D003937 ORTHO05D004583 5.0e-18 95.5 79 63.3
FAN15G3453 Fragaria x ananassa HOM05D003937 ORTHO05D004583 5.0e-18 95.5 79 63.3
FAN20G0177 Fragaria x ananassa HOM05D003937 ORTHO05D004583 5.0e-18 95.5 79 63.3
FAN24G0691 Fragaria x ananassa HOM05D003937 ORTHO05D004583 5.0e-18 95.5 79 63.3
Hma1.2p1_0271F.1_g108900 Hydrangea macrophylla HOM05D003937 ORTHO05D004583 5.0e-18 95.5 236 33.9
arahy.Tifrunner.gnm1.ann1.388DF8 Arachis hypogaea HOM05D003937 ORTHO05D004583 6.5e-18 95.1 74 64.9
QL11p055606 Quercus lobata HOM05D003937 ORTHO05D004583 8.6e-18 94.7 82 59.8
QL11p055907 Quercus lobata HOM05D003937 ORTHO05D004583 8.6e-18 94.7 82 59.8
arahy.Tifrunner.gnm1.ann1.G18Z51 Arachis hypogaea HOM05D003937 ORTHO05D004583 1.1e-17 94.4 74 64.9
Potri.009G166100 Populus trichocarpa HOM05D003937 ORTHO05D004583 1.1e-17 94.4 170 38.2
RcHm_v2.0_Chr6g0280681 Rosa chinensis HOM05D003937 ORTHO05D004583 1.1e-17 94.4 79 62.0
Atru.chr5.3549 Acer truncatum HOM05D003937 ORTHO05D004583 1.5e-17 94.0 78 64.1
Lalb_Chr08g0246851 Lupinus albus HOM05D003937 ORTHO05D004583 1.5e-17 94.0 78 61.5
FAN27G2747 Fragaria x ananassa HOM05D003937 ORTHO05D004583 1.9e-17 93.6 144 42.4
Lalb_Chr11g0061231 Lupinus albus HOM05D003937 ORTHO05D004583 4.2e-17 92.4 175 39.4
Sc18g0006030 Simmondsia chinensis HOM05D003937 ORTHO05D004583 5.5e-17 92.0 73 63.0
Potri.004G205200 Populus trichocarpa HOM05D003937 ORTHO05D004583 7.2e-17 91.7 79 59.5
PGR142G1962 Punica granatum HOM05D003937 ORTHO05D004583 7.2e-17 91.7 240 35.4
MD05G1134400 Malus domestica HOM05D003937 ORTHO05D004583 1.2e-16 90.9 81 59.3
Peaxi162Scf00362g00245 Petunia axillaris HOM05D003937 ORTHO05D004583 1.2e-16 90.9 68 69.1
MD10G1139500 Malus domestica HOM05D003937 ORTHO05D004583 2.1e-16 90.1 81 59.3
Oeu003435.2 Olea europaea HOM05D003937 ORTHO05D004583 2.1e-16 90.1 80 60.0
MSTRG.16955 Avicennia marina HOM05D003937 ORTHO05D004583 2.8e-16 89.7 80 58.8
TWI75G1612 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 2.8e-16 89.7 71 66.2
Eucgr.I01517 Eucalyptus grandis HOM05D003937 ORTHO05D004583 3.6e-16 89.4 71 64.8
Lj1g0000413 Lotus japonicus HOM05D003937 ORTHO05D004583 3.6e-16 89.4 80 58.8
CSS0036568 Camellia sinensis var. sinensis HOM05D003937 ORTHO05D004583 4.7e-16 89.0 223 35.0
Sabra04G0138500 Salix brachista HOM05D003937 ORTHO05D004583 4.7e-16 89.0 211 33.6
Dinv41880 Davidia involucrata HOM05D001927 ORTHO05D001972 1.0e-15 87.8 232 33.2
Rhsim05G0047600 Rhododendron simsii HOM05D003937 ORTHO05D004583 1.8e-15 87.0 190 36.3
CiPaw.05G091700 Carya illinoinensis HOM05D003937 ORTHO05D004583 2.3e-15 86.7 230 31.3
GSVIVG01023888001 Vitis vinifera HOM05D003937 ORTHO05D004583 2.3e-15 86.7 66 68.2
TAR625G1504 Trochodendron aralioides HOM05D003937 ORTHO05D004583 3.0e-15 86.3 69 60.9
PGSC0003DMG400014661 Solanum tuberosum HOM05D003937 ORTHO05D004583 6.8e-15 85.1 68 63.2
Migut.B00012 Erythranthe guttata HOM05D003937 ORTHO05D004583 8.8e-15 84.7 79 55.7
CAN.G1725.8 Capsicum annuum HOM05D003937 ORTHO05D004583 1.2e-14 84.3 68 64.7
vmacro17300 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 5.7e-14 82.0 188 35.1
SalBow1G5464 Salvia bowleyana HOM05D003937 ORTHO05D004583 9.8e-14 81.3 242 30.2
Solyc01g112180.4 Solanum lycopersicum HOM05D003937 ORTHO05D004583 9.8e-14 81.3 68 60.3
Sopen01g054230 Solanum pennellii HOM05D003937 ORTHO05D004583 9.8e-14 81.3 68 60.3
CANSAT25G1278 Cannabis sativa HOM05D003937 ORTHO05D004583 2.2e-13 80.1 70 54.3
Dinv14164 Davidia involucrata HOM05D001927 ORTHO05D001972 2.8e-13 79.7 77 55.8
MD06G1009100 Malus domestica HOM05D003937 ORTHO05D004583 2.8e-13 79.7 66 57.6
Nitab4.5_0011212g0050 Nicotiana tabacum HOM05D003937 ORTHO05D004583 3.7e-13 79.3 59 67.8
Cc09_g10730 Coffea canephora HOM05D003937 ORTHO05D004583 4.9e-13 79.0 88 54.5
Prupe.5G011500 Prunus persica HOM05D003937 ORTHO05D004583 1.4e-12 77.4 74 52.7
Actinidia37917 Actinidia chinensis HOM05D003937 ORTHO05D004583 1.8e-12 77.0 68 52.9
Nitab4.5_0000588g0020 Nicotiana tabacum HOM05D003937 ORTHO05D004583 1.8e-12 77.0 69 58.0
Actinidia32012 Actinidia chinensis HOM05D003937 ORTHO05D004583 3.1e-12 76.3 227 32.6
GSVIVG01009897001 Vitis vinifera HOM05D003937 ORTHO05D004583 4.1e-12 75.9 69 50.7
CAN.G311.122 Capsicum annuum HOM05D003937 ORTHO05D004583 5.4e-12 75.5 67 55.2
FvH4_5g25250 Fragaria vesca HOM05D003937 ORTHO05D004583 1.2e-11 74.3 67 53.7
Haze_02016 Corylus avellana HOM05D003937 ORTHO05D004583 1.6e-11 73.9 55 67.3
MBI08_g12714_MAGBIO Magnolia biondii HOM05D003937 ORTHO05D004583 1.6e-11 73.9 78 50.0
Cfa005351 Carpinus fangiana HOM05D003937 ORTHO05D004583 2.7e-11 73.2 57 64.9
Oeu046353.1 Olea europaea HOM05D003937 ORTHO05D004583 2.7e-11 73.2 67 53.7
Solyc04g082450.3 Solanum lycopersicum HOM05D003937 ORTHO05D004583 3.5e-11 72.8 67 52.2
Sopen04g036060 Solanum pennellii HOM05D003937 ORTHO05D004583 3.5e-11 72.8 67 52.2
HanXRQChr13g0409731 Helianthus annuus HOM05D003937 ORTHO05D004583 5.9e-11 72.0 72 47.2
Nn6g31719 Nelumbo nucifera HOM05D003937 ORTHO05D004583 5.9e-11 72.0 70 51.4
MSTRG.24495 Avicennia marina HOM05D003937 ORTHO05D004583 7.8e-11 71.6 67 50.7
Nitab4.5_0000783g0190 Nicotiana tabacum HOM05D003937 ORTHO05D004583 7.8e-11 71.6 53 67.9
SGA_v2.0_scaffold32G13344 Striga asiatica HOM05D003937 ORTHO05D004583 1.0e-10 71.2 78 52.6
HanXRQChr12g0367561 Helianthus annuus HOM05D003937 ORTHO05D004583 1.3e-10 70.9 67 50.7
RcHm_v2.0_Chr7g0215391 Rosa chinensis HOM05D003937 ORTHO05D004583 1.3e-10 70.9 67 53.7
Cc10_g00590 Coffea canephora HOM05D003937 ORTHO05D004583 1.7e-10 70.5 78 48.7
HanXRQChr12g0374421 Helianthus annuus HOM05D003937 ORTHO05D004583 1.7e-10 70.5 68 55.9
Prupe.8G178200 Prunus persica HOM05D003937 ORTHO05D004583 1.7e-10 70.5 62 59.7
Hund06165 Selenicereus undatus HOM05D003937 ORTHO05D004583 1.7e-10 70.5 57 61.4
TAR381G0291 Trochodendron aralioides HOM05D003937 ORTHO05D004583 1.7e-10 70.5 78 53.8
Nn5g30963 Nelumbo nucifera HOM05D003937 ORTHO05D004583 2.3e-10 70.1 92 41.3
PSO675G5999 Papaver somniferum HOM05D003937 ORTHO05D004583 2.3e-10 70.1 97 41.2
CiPaw.07G137900 Carya illinoinensis HOM05D003937 ORTHO05D004583 2.9e-10 69.7 68 50.0
arahy.Tifrunner.gnm1.ann1.13SVP6 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.8e-10 69.3 53 64.2
arahy.Tifrunner.gnm1.ann1.BKYH70 Arachis hypogaea HOM05D003937 ORTHO05D004583 3.8e-10 69.3 66 53.0
Lsat_1_v5_gn_3_48780 Lactuca sativa HOM05D003937 ORTHO05D004583 3.8e-10 69.3 76 51.3
Rhsim07G0256300 Rhododendron simsii HOM05D003937 ORTHO05D004583 3.8e-10 69.3 67 47.8
MSTRG.22102 Avicennia marina HOM05D003937 ORTHO05D004583 5.0e-10 68.9 79 46.8
ECA233G5124 Erigeron canadensis HOM05D003937 ORTHO05D004583 5.0e-10 68.9 67 47.8
PSO541G3051 Papaver somniferum HOM05D003937 ORTHO05D004583 5.0e-10 68.9 75 49.3
CDE05G2511 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 6.6e-10 68.6 81 45.7
Lj4A806T76 Lonicera japonica HOM05D003937 ORTHO05D004583 6.6e-10 68.6 67 49.3
TWI79G1491 Tripterygium wilfordii HOM05D003937 ORTHO05D004583 6.6e-10 68.6 59 59.3
arahy.Tifrunner.gnm1.ann1.5851ZQ Arachis hypogaea HOM05D003937 ORTHO05D004583 8.6e-10 68.2 66 51.5
Lsat_1_v5_gn_8_26360 Lactuca sativa HOM05D003937 ORTHO05D004583 8.6e-10 68.2 66 48.5
vmacro08750 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 8.6e-10 68.2 65 52.3
Aqoxy6G01687 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 1.1e-09 67.8 70 48.6
HPP92_021046 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.1e-09 67.8 67 52.2
Migut.N02961 Erythranthe guttata HOM05D003937 ORTHO05D004583 1.5e-09 67.4 67 46.3
DCAR_013923 Daucus carota HOM05D003937 ORTHO05D004583 1.9e-09 67.0 73 49.3
Dinv31951 Davidia involucrata HOM05D003937 ORTHO05D004583 1.9e-09 67.0 78 46.2
GSVIVG01026659001 Vitis vinifera HOM05D003937 ORTHO05D004583 1.9e-09 67.0 70 48.6
ECA246G4591 Erigeron canadensis HOM05D003937 ORTHO05D004583 3.3e-09 66.2 69 52.2
SalBow6G3106 Salvia bowleyana HOM05D003937 ORTHO05D004583 3.3e-09 66.2 63 50.8
DCAR_016775 Daucus carota HOM05D003937 ORTHO05D004583 7.3e-09 65.1 80 46.2
Zm00001eb104250 Zea mays HOM05D003937 ORTHO05D004583 9.5e-09 64.7 84 45.2
Os04g0136900 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 1.2e-08 64.3 68 47.1
ECA233G2935 Erigeron canadensis HOM05D003937 ORTHO05D004583 2.1e-08 63.5 68 50.0
DCAR_015663 Daucus carota HOM05D003937 ORTHO05D004583 3.6e-08 62.8 53 62.3
Os09g0549400 Oryza sativa ssp. japonica HOM05D003937 ORTHO05D004583 6.1e-08 62.0 73 41.1
HPP92_025977 Vanilla planifolia HOM05D003937 ORTHO05D004583 1.0e-07 61.2 69 49.3
CDE06G0218 Ceratophyllum demersum HOM05D003937 ORTHO05D004583 1.4e-07 60.8 84 45.2
SGA_v2.0_scaffold364G49977 Striga asiatica HOM05D003937 ORTHO05D004583 2.3e-07 60.1 71 45.1
CsaV3_6G031550 Cucumis sativus L. HOM05D003937 ORTHO05D004583 3.0e-07 59.7 64 46.9
Aqoxy5G01031 Aquilegia oxysepala HOM05D003937 ORTHO05D004583 8.9e-07 58.2 68 44.1
Cfa014094 Carpinus fangiana HOM05D003937 ORTHO05D004583 8.9e-07 58.2 68 44.1
Sed0014450 Sechium edule HOM05D003937 ORTHO05D004583 8.9e-07 58.2 65 46.2
ATR0661G493 Amborella trichopoda HOM05D003937 ORTHO05D004583 2.6e-06 56.6 67 43.3
FAN18G0752 Fragaria x ananassa HOM05D003937 ORTHO05D004583 2.6e-06 56.6 51 54.9
QL02p014402 Quercus lobata HOM05D003937 ORTHO05D004583 2.6e-06 56.6 76 43.4
vmacro04409 Vaccinium macrocarpon HOM05D003937 ORTHO05D004583 2.6e-06 56.6 53 50.9
FAN08G1258 Fragaria x ananassa HOM05D003937 ORTHO05D004583 3.4e-06 56.2 51 54.9
Pp3c19_6980 Physcomitrium patens HOM05D003937 ORTHO05D004583 5.7e-06 55.5 81 38.3
HPP92_020992 Vanilla planifolia HOM05D003937 ORTHO05D004583 7.5e-06 55.1 159 29.6
Zm00001eb420050 Zea mays HOM05D003937 ORTHO05D004583 7.5e-06 55.1 160 30.0


User provided reference genes

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