Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 6.3e-132 474.2 249 100.0
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 5.9e-114 414.5 252 84.5
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 8.6e-113 410.6 258 85.7
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 9.5e-112 407.1 253 86.6
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 3.0e-110 402.1 252 86.5
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 8.3e-108 394.0 253 84.6
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 2.4e-107 392.5 253 82.2
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 1.2e-106 390.2 253 78.7
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 3.5e-106 388.7 253 78.3
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 2.3e-105 386.0 254 83.5
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 7.3e-104 380.9 253 77.5
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 7.3e-104 380.9 253 77.5
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 1.2e-101 373.6 254 78.7
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 1.5e-96 356.7 262 70.6
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 8.9e-86 320.9 237 67.5
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 3.7e-84 315.5 236 66.9
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 6.4e-84 314.7 225 70.7
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 8.3e-84 314.3 223 70.0
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 1.9e-83 313.2 248 63.3
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 1.9e-83 313.2 247 64.0
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 3.2e-83 312.4 236 65.7
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 1.2e-82 310.5 236 66.1
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.6e-82 310.1 225 68.4
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 1.6e-82 310.1 247 64.8
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 3.5e-82 308.9 225 67.6
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 4.6e-82 308.5 239 65.3
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.0e-81 307.4 247 64.0
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 1.7e-81 306.6 224 68.8
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 2.3e-81 306.2 227 67.8
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 2.3e-81 306.2 249 65.1
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 8.6e-81 304.3 247 61.1
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 8.6e-81 304.3 228 67.5
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 1.5e-80 303.5 224 66.5
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 3.3e-80 302.4 223 66.4
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 4.3e-80 302.0 223 67.7
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 7.3e-80 301.2 223 65.5
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 7.3e-80 301.2 209 70.8
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 9.5e-80 300.8 234 63.7
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 2.8e-79 299.3 234 64.5
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 4.7e-79 298.5 252 61.9
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 1.1e-78 297.4 223 64.1
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 1.1e-78 297.4 241 61.8
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 1.1e-78 297.4 230 65.7
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 4.0e-78 295.4 236 63.6
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 5.2e-78 295.0 250 62.0
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 6.8e-78 294.7 250 60.4
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 8.9e-78 294.3 236 62.3
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 8.9e-78 294.3 230 65.2
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.2e-77 293.9 236 63.1
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 1.5e-77 293.5 236 63.1
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 2.6e-77 292.7 225 64.4
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 2.6e-77 292.7 237 62.0
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 3.4e-77 292.4 228 64.5
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 3.4e-77 292.4 236 63.1
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 3.4e-77 292.4 234 63.2
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 3.4e-77 292.4 228 64.9
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 5.8e-77 291.6 236 63.1
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 7.6e-77 291.2 223 66.4
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.3e-76 290.4 225 64.0
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 2.2e-76 289.7 226 64.6
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 6.4e-76 288.1 226 64.2
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 1.1e-75 287.3 228 68.4
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 3.2e-75 285.8 250 60.0
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 4.1e-75 285.4 207 68.6
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 4.1e-75 285.4 250 58.8
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 5.4e-75 285.0 231 64.1
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 1.2e-74 283.9 262 59.2
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 1.2e-74 283.9 223 64.1
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 3.5e-74 282.3 224 61.2
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 4.6e-74 282.0 248 60.1
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 6.0e-74 281.6 226 64.6
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 7.8e-74 281.2 224 60.7
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 1.0e-73 280.8 232 59.5
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 1.0e-73 280.8 207 67.1
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 3.0e-73 279.3 248 58.5
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 5.1e-73 278.5 206 67.5
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 5.1e-73 278.5 225 61.8
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 1.9e-72 276.6 279 53.4
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 3.3e-72 275.8 248 64.1
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 4.3e-72 275.4 250 60.0
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 4.3e-72 275.4 273 53.5
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 7.3e-72 274.6 223 61.0
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 2.1e-71 273.1 223 63.7
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 8.1e-71 271.2 252 56.0
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 1.1e-70 270.8 246 58.9
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 1.4e-70 270.4 248 59.3
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 1.8e-70 270.0 228 59.6
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 2.4e-70 269.6 224 59.4
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 5.2e-70 268.5 227 61.2
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 6.9e-70 268.1 286 51.0
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 6.9e-70 268.1 227 60.4
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 1.5e-69 266.9 288 50.7
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 3.4e-69 265.8 240 57.9
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 3.8e-68 262.3 324 46.6
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 6.4e-68 261.5 227 59.0
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 8.4e-68 261.2 229 58.1
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 1.9e-67 260.0 203 63.1
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 7.1e-67 258.1 229 57.2
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 3.5e-66 255.8 203 62.6
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 6.0e-66 255.0 206 61.2
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 1.0e-65 254.2 162 74.7
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 1.0e-65 254.2 203 62.1
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 2.3e-65 253.1 226 54.0
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.7e-60 236.9 226 50.9
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 4.6e-58 228.8 206 51.9
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 9.6e-56 221.1 247 49.8
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 1.8e-54 216.9 232 47.8
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 1.2e-53 214.2 250 48.8
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 5.5e-51 205.3 201 49.8
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 3.9e-49 199.1 223 45.3
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 2.1e-47 193.4 236 47.5
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 3.8e-36 156.0 179 39.1
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 5.0e-36 155.6 171 43.9
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 4.3e-32 142.5 115 60.9
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 5.0e-28 129.0 171 36.3
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 2.2e-23 113.6 181 36.5
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 1.9e-19 100.5 73 65.8
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 3.8e-12 76.3 125 39.2
Cre12.g551100 Chlamydomonas reinhardtii HOM05D006780 ORTHO05D008455 9.1e-06 55.1 126 30.2


User provided reference genes

Program Settings