Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G44580 Arabidopsis thaliana HOM05D005798 ORTHO05D007269 2.6e-225 785.0 387 100.0
AL4G43620 Arabidopsis lyrata HOM05D005798 ORTHO05D007269 2.8e-211 738.4 394 93.7
Sp4g26670 Schrenkiella parvula HOM05D005798 ORTHO05D007269 2.2e-192 675.6 388 86.9
Carub.0004s2713 Capsella rubella HOM05D005798 ORTHO05D007269 1.9e-191 672.5 391 85.9
CARHR139800 Cardamine hirsuta HOM05D005798 ORTHO05D007269 1.4e-186 656.4 385 85.5
Thhalv10001723m.g Eutrema salsugineum HOM05D005798 ORTHO05D007269 7.4e-180 634.0 364 86.0
BolC4t22185H Brassica oleracea HOM05D005798 ORTHO05D007269 1.5e-177 626.3 383 81.2
BcaC02g12292 Brassica carinata HOM05D005798 ORTHO05D007269 3.4e-177 625.2 383 81.2
C04p05550 Brassica napus HOM05D005798 ORTHO05D007269 3.4e-177 625.2 383 81.2
BraA05t19450Z Brassica rapa HOM05D005798 ORTHO05D007269 6.5e-176 620.9 383 80.2
Aa31LG1G26140 Aethionema arabicum HOM05D005798 ORTHO05D007269 8.5e-176 620.5 397 79.3
BcaB02g08835 Brassica carinata HOM05D005798 ORTHO05D007269 1.1e-175 620.2 387 79.6
A05p04740 Brassica napus HOM05D005798 ORTHO05D007269 9.3e-175 617.1 383 79.4
THA.LOC104817171 Tarenaya hassleriana HOM05D005798 ORTHO05D007269 1.0e-152 543.9 393 68.2
FAN26G0835 Fragaria x ananassa HOM05D005798 ORTHO05D007269 2.1e-134 483.0 394 60.4
QL04p025438 Quercus lobata HOM05D005798 ORTHO05D007269 2.3e-133 479.6 393 60.6
FvH4_1g25731 Fragaria vesca HOM05D005798 ORTHO05D007269 5.2e-133 478.4 394 59.9
FAN28G0191 Fragaria x ananassa HOM05D005798 ORTHO05D007269 8.9e-133 477.6 394 59.9
FAN23G2651 Fragaria x ananassa HOM05D005798 ORTHO05D007269 1.2e-132 477.2 394 59.9
Sabra16G0226600 Salix brachista HOM05D005798 ORTHO05D007269 1.2e-132 477.2 393 60.8
PGSC0003DMG400001703 Solanum tuberosum HOM05D005798 ORTHO05D007269 1.2e-132 477.2 395 60.8
Ciclev10020482m.g Citrus clementina HOM05D005798 ORTHO05D007269 4.4e-132 475.3 393 59.0
Solyc01g088390.3 Solanum lycopersicum HOM05D005798 ORTHO05D007269 7.5e-132 474.6 395 60.0
RcHm_v2.0_Chr1g0343251 Rosa chinensis HOM05D005798 ORTHO05D007269 9.8e-132 474.2 394 59.6
Prupe.2G112300 Prunus persica HOM05D005798 ORTHO05D007269 1.3e-131 473.8 397 60.2
CiPaw.13G020800 Carya illinoinensis HOM05D005798 ORTHO05D007269 4.9e-131 471.9 393 59.0
Gorai.011G295600 Gossypium raimondii HOM05D005798 ORTHO05D007269 6.3e-131 471.5 391 60.4
Sopen01g035220 Solanum pennellii HOM05D005798 ORTHO05D007269 6.3e-131 471.5 395 59.2
CAN.G1480.2 Capsicum annuum HOM05D005798 ORTHO05D007269 8.3e-131 471.1 395 59.5
Gohir.A10G242600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 8.3e-131 471.1 390 59.7
Atru.chr5.52 Acer truncatum HOM05D005798 ORTHO05D007269 1.1e-130 470.7 394 59.6
Manes.05G060100 Manihot esculenta HOM05D005798 ORTHO05D007269 1.1e-130 470.7 394 60.9
Nitab4.5_0013532g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 1.4e-130 470.3 395 58.5
vmacro21093 Vaccinium macrocarpon HOM05D005798 ORTHO05D007269 1.8e-130 469.9 387 60.2
Duzib128G1323 Durio zibethinus HOM05D005798 ORTHO05D007269 2.4e-130 469.5 393 59.0
Thecc.10G001400 Theobroma cacao HOM05D005798 ORTHO05D007269 2.4e-130 469.5 393 60.1
Atru.chr5.24 Acer truncatum HOM05D005798 ORTHO05D007269 7.0e-130 468.0 394 59.4
Peaxi162Scf01124g00121 Petunia axillaris HOM05D005798 ORTHO05D007269 1.2e-129 467.2 394 58.9
CANSAT21G0894 Cannabis sativa HOM05D005798 ORTHO05D007269 1.6e-129 466.8 390 58.2
Cc02_g25760 Coffea canephora HOM05D005798 ORTHO05D007269 2.0e-129 466.5 395 58.5
Gohir.D10G254600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 3.5e-129 465.7 391 59.8
Potri.001G346900 Populus trichocarpa HOM05D005798 ORTHO05D007269 7.8e-129 464.5 393 59.5
Nitab4.5_0009219g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 1.7e-128 463.4 395 58.2
MD07G1086000 Malus domestica HOM05D005798 ORTHO05D007269 2.9e-128 462.6 394 57.9
Migut.B01472 Erythranthe guttata HOM05D005798 ORTHO05D007269 3.8e-128 462.2 393 60.3
TWI59G0898 Tripterygium wilfordii HOM05D005798 ORTHO05D007269 1.1e-127 460.7 399 56.9
MD02G1227400 Malus domestica HOM05D005798 ORTHO05D007269 4.3e-127 458.8 394 57.9
PGR004G1878 Punica granatum HOM05D005798 ORTHO05D007269 1.2e-126 457.2 393 58.0
VMungo1080G0989 Vigna mungo HOM05D005798 ORTHO05D007269 1.6e-126 456.8 393 57.5
arahy.Tifrunner.gnm1.ann1.1MA0KJ Arachis hypogaea HOM05D005798 ORTHO05D007269 2.8e-126 456.1 392 56.4
Phvul.005G016200 Phaseolus vulgaris HOM05D005798 ORTHO05D007269 6.1e-126 454.9 393 57.0
PGR004G0434 Punica granatum HOM05D005798 ORTHO05D007269 6.1e-126 454.9 393 57.5
Hund17139 Selenicereus undatus HOM05D005798 ORTHO05D007269 8.0e-126 454.5 402 57.0
Lj1g0019008 Lotus japonicus HOM05D005798 ORTHO05D007269 1.0e-125 454.1 394 55.1
arahy.Tifrunner.gnm1.ann1.6FN2NF Arachis hypogaea HOM05D005798 ORTHO05D007269 1.8e-125 453.4 392 56.1
AUR62027448 Chenopodium quinoa HOM05D005798 ORTHO05D007269 1.8e-125 453.4 398 56.0
AUR62031252 Chenopodium quinoa HOM05D005798 ORTHO05D007269 4.0e-125 452.2 398 55.3
Glyma.06G310400 Glycine max HOM05D005798 ORTHO05D007269 4.0e-125 452.2 393 56.5
Lalb_Chr19g0126311 Lupinus albus HOM05D005798 ORTHO05D007269 6.8e-125 451.4 393 57.3
Medtr0103s0100 Medicago truncatula HOM05D005798 ORTHO05D007269 1.2e-124 450.7 396 55.6
Glyma.04G128400 Glycine max HOM05D005798 ORTHO05D007269 2.6e-124 449.5 393 56.5
CSS0042045 Camellia sinensis var. sinensis HOM05D005798 ORTHO05D007269 4.4e-124 448.7 391 58.6
Psat3g172680 Pisum sativum HOM05D005798 ORTHO05D007269 1.7e-123 446.8 396 55.1
EL10Ac8g19272 Beta vulgaris HOM05D005798 ORTHO05D007269 6.4e-123 444.9 398 55.0
Sc26g0001830 Simmondsia chinensis HOM05D005798 ORTHO05D007269 6.4e-123 444.9 382 56.3
MSTRG.20650 Avicennia marina HOM05D005798 ORTHO05D007269 3.2e-122 442.6 391 57.0
Ca_03850_v3 Cicer arietinum L. HOM05D005798 ORTHO05D007269 3.2e-122 442.6 394 55.3
Eucgr.D01150 Eucalyptus grandis HOM05D005798 ORTHO05D007269 1.2e-121 440.7 393 55.2
Nn2g10726 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.2e-121 440.7 390 55.4
Oeu024375.1 Olea europaea HOM05D005798 ORTHO05D007269 4.6e-121 438.7 377 57.0
Oeu024376.1 Olea europaea HOM05D005798 ORTHO05D007269 4.6e-121 438.7 377 57.0
ClCG05G002770 Citrullus lanatus HOM05D005798 ORTHO05D007269 8.6e-120 434.5 392 53.6
MELO3C006251.2 Cucumis melo HOM05D005798 ORTHO05D007269 8.6e-120 434.5 393 53.7
CsaV3_3G010280 Cucumis sativus L. HOM05D005798 ORTHO05D007269 1.6e-118 430.3 393 53.9
PSO017G1219 Papaver somniferum HOM05D005798 ORTHO05D007269 1.5e-116 423.7 392 54.8
HanXRQChr16g0519531 Helianthus annuus HOM05D005798 ORTHO05D007269 2.6e-116 422.9 384 55.7
PSO782G4885 Papaver somniferum HOM05D005798 ORTHO05D007269 4.4e-116 422.2 392 54.6
MBI05_g22048_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 2.2e-115 419.9 394 54.1
PSO063G7295 Papaver somniferum HOM05D005798 ORTHO05D007269 3.2e-114 416.0 402 53.5
Sed0012756 Sechium edule HOM05D005798 ORTHO05D007269 4.6e-113 412.1 393 52.2
unitig_52.g17377 Utricularia gibba HOM05D005798 ORTHO05D007269 3.3e-111 406.0 392 52.0
Lj7C553T5 Lonicera japonica HOM05D005798 ORTHO05D007269 7.3e-111 404.8 394 53.6
Zm00001eb112030 Zea mays HOM05D005798 ORTHO05D007269 1.8e-109 400.2 392 51.5
ECA234G4178 Erigeron canadensis HOM05D005798 ORTHO05D007269 3.1e-109 399.4 381 52.8
TPR.G30814 Trifolium pratense HOM05D005798 ORTHO05D007269 2.0e-108 396.7 350 56.6
HPP92_011679 Vanilla planifolia HOM05D005798 ORTHO05D007269 5.8e-108 395.2 397 51.6
Ah.14g086050 Amaranthus hybridus HOM05D005798 ORTHO05D007269 3.7e-107 392.5 388 52.1
Os05g0119600 Oryza sativa ssp. japonica HOM05D005798 ORTHO05D007269 2.3e-104 383.3 383 51.2
SGA_v2.0_scaffold17G08178 Striga asiatica HOM05D005798 ORTHO05D007269 8.1e-102 374.8 347 53.6
SEGI_02869 Sequoiadendron giganteum HOM05D005798 ORTHO05D007269 5.8e-100 368.6 396 45.7
COL.COLO4_19318 Corchorus olitorius HOM05D005798 ORTHO05D007269 1.4e-98 364.0 318 57.9
CDE06G2636 Ceratophyllum demersum HOM05D005798 ORTHO05D007269 3.0e-96 356.3 361 51.2
Actinidia33294 Actinidia chinensis HOM05D005798 ORTHO05D007269 7.3e-95 351.7 356 51.4
ATR0585G014 Amborella trichopoda HOM05D005798 ORTHO05D007269 2.1e-89 333.6 388 45.4
Nn1g00612 Nelumbo nucifera HOM05D005798 ORTHO05D007269 2.1e-89 333.6 281 56.9
Rhsim01G0145000 Rhododendron simsii HOM05D005798 ORTHO05D007269 1.9e-87 327.0 376 45.7
Cpa.g.sc3387.1 Carica papaya HOM05D005798 ORTHO05D007269 1.4e-85 320.9 238 64.7
Pp3c5_22720 Physcomitrium patens HOM05D005798 ORTHO05D007269 9.6e-79 298.1 395 40.0
Dinv43575 Davidia involucrata HOM05D005798 ORTHO05D007269 2.2e-75 287.0 271 53.5
Mapoly0001s0452 Marchantia polymorpha HOM05D005798 ORTHO05D007269 1.4e-74 284.3 401 37.9
TAR375G0847 Trochodendron aralioides HOM05D005798 ORTHO05D007269 3.2e-74 283.1 257 54.1
AagrBONN_evm.TU.Sc2ySwM_344.2100 Anthoceros agrestis HOM05D005798 ORTHO05D007269 9.6e-71 271.6 383 37.3
GSVIVG01018417001 Vitis vinifera HOM05D005798 ORTHO05D007269 3.0e-64 250.0 191 64.4
Lsat_1_v5_gn_4_46040 Lactuca sativa HOM05D005798 ORTHO05D007269 3.2e-58 229.9 189 60.3
Actinidia21608 Actinidia chinensis HOM05D005798 ORTHO05D007269 1.3e-54 218.0 156 66.7
Nn3g19112 Nelumbo nucifera HOM05D005798 ORTHO05D007269 2.6e-52 210.3 249 45.4
Nn1g07358 Nelumbo nucifera HOM05D005798 ORTHO05D007269 4.5e-52 209.5 192 55.7
Peaxi162Scf00417g00029 Petunia axillaris HOM05D005798 ORTHO05D007269 5.7e-47 192.6 229 45.0
Haze_02923 Corylus avellana HOM05D005798 ORTHO05D007269 6.3e-46 189.1 191 52.9
GSVIVG01018418001 Vitis vinifera HOM05D005798 ORTHO05D007269 1.3e-43 181.4 142 64.1
Prupe.2G112400 Prunus persica HOM05D005798 ORTHO05D007269 3.8e-43 179.9 195 51.8
Nn3g19416 Nelumbo nucifera HOM05D005798 ORTHO05D007269 9.4e-42 175.3 163 54.6
Prupe.2G112500 Prunus persica HOM05D005798 ORTHO05D007269 3.9e-40 169.9 162 53.7
CBR_g39622 Chara braunii HOM05D000017 ORTHO05D000013 4.4e-39 166.4 429 29.4
Dinv43574 Davidia involucrata HOM05D005798 ORTHO05D007269 1.3e-35 154.8 110 68.2
Nn1g07357 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.9e-34 151.0 134 53.7
CAN.G195.32 Capsicum annuum HOM05D005798 ORTHO05D007269 4.2e-34 149.8 169 47.3
Atru.chr5.133 Acer truncatum HOM05D005798 ORTHO05D007269 7.2e-34 149.1 142 54.2
HanXRQChr12g0366931 Helianthus annuus HOM05D005798 ORTHO05D007269 1.2e-33 148.3 239 36.0
PRCOL_00005399 Prasinoderma coloniale HOM05D005798 ORTHO05D007269 2.7e-33 147.1 371 30.7
Cre16.g684155 Chlamydomonas reinhardtii HOM05D005798 ORTHO05D007269 8.0e-33 145.6 359 28.7
Atru.chr5.134 Acer truncatum HOM05D005798 ORTHO05D007269 6.3e-30 136.0 93 68.8
CAN.G74.39 Capsicum annuum HOM05D005798 ORTHO05D007269 8.3e-30 135.6 138 51.4
Nn3g19415 Nelumbo nucifera HOM05D005798 ORTHO05D007269 5.5e-26 122.9 83 66.3
CAN.G74.38 Capsicum annuum HOM05D005798 ORTHO05D007269 1.0e-24 118.6 93 65.6
HPP92_011700 Vanilla planifolia HOM05D005798 ORTHO05D007269 1.0e-19 102.1 228 32.5
MCO12G177 Micromonas commoda HOM05D005798 ORTHO05D007269 1.7e-19 101.3 477 25.2
HanXRQChr07g0198081 Helianthus annuus HOM05D005798 ORTHO05D007269 1.6e-17 94.7 234 29.5
EL10Ac6g13432 Beta vulgaris HOM05D005798 ORTHO05D007269 4.7e-17 93.2 97 46.4
MBI14_g08084_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 8.6e-11 72.4 90 40.0
TAR375G0441 Trochodendron aralioides HOM05D005798 ORTHO05D007269 2.6e-07 60.8 43 65.1
HanXRQChr11g0349311 Helianthus annuus HOM05D000428 ORTHO05D011602 4.4e-07 60.1 102 36.3


User provided reference genes

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