Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 6.3e-91 337.4 171 100.0
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 1.4e-90 336.3 171 99.4
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 1.2e-89 333.2 171 97.7
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.9e-87 325.9 171 95.9
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 9.4e-87 323.6 171 94.2
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.6e-86 322.8 171 94.7
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 6.1e-86 320.9 171 93.6
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 6.1e-86 320.9 171 94.7
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 2.3e-85 318.9 171 93.0
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 6.8e-85 317.4 171 92.4
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 6.8e-85 317.4 171 92.4
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 1.2e-84 316.6 171 91.8
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 1.2e-84 316.6 171 91.8
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 5.0e-80 301.2 171 87.7
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 5.0e-80 301.2 171 87.7
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 4.2e-79 298.1 171 86.0
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 5.5e-79 297.7 171 88.3
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 5.5e-79 297.7 171 86.5
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 3.6e-78 295.0 169 86.4
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 8.0e-78 293.9 164 89.0
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 8.0e-78 293.9 171 86.5
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 1.4e-77 293.1 164 89.0
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 1.4e-77 293.1 164 89.0
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 2.2e-75 285.8 172 84.9
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 5.6e-71 271.2 171 76.6
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 6.1e-70 267.7 173 75.7
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 1.4e-69 266.5 171 74.3
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 4.0e-69 265.0 165 79.4
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 8.9e-69 263.8 171 76.6
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.5e-68 263.1 172 76.2
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 1.5e-68 263.1 174 75.9
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 2.6e-68 262.3 169 74.0
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 4.4e-68 261.5 172 75.0
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 4.4e-68 261.5 178 75.3
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 7.5e-68 260.8 173 72.8
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 7.5e-68 260.8 175 74.3
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 1.7e-67 259.6 175 73.7
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 2.2e-67 259.2 172 73.8
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 2.2e-67 259.2 173 72.3
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 3.7e-67 258.5 181 71.8
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 6.4e-67 257.7 173 75.1
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 1.1e-66 256.9 174 74.1
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 1.4e-66 256.5 175 73.1
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 1.4e-66 256.5 162 79.0
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 2.4e-66 255.8 173 72.8
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 3.2e-66 255.4 173 74.0
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 4.1e-66 255.0 174 72.4
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 5.4e-66 254.6 169 72.2
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 7.0e-66 254.2 175 72.6
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 7.0e-66 254.2 171 73.7
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 7.0e-66 254.2 172 74.4
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 7.0e-66 254.2 173 72.3
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 7.0e-66 254.2 169 72.8
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 9.2e-66 253.8 173 72.8
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.2e-65 253.4 174 71.3
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.2e-65 253.4 174 72.4
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 2.0e-65 252.7 172 72.1
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 2.0e-65 252.7 171 72.5
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 2.0e-65 252.7 174 71.8
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 2.7e-65 252.3 170 72.4
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 4.6e-65 251.5 161 73.3
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 7.8e-65 250.8 171 71.9
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 1.3e-64 250.0 178 70.8
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 1.3e-64 250.0 174 72.4
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 1.3e-64 250.0 168 72.0
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 1.3e-64 250.0 173 72.3
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 1.7e-64 249.6 181 69.6
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 2.3e-64 249.2 160 76.2
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 3.0e-64 248.8 164 73.8
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 3.0e-64 248.8 175 70.9
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 3.0e-64 248.8 167 71.3
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 5.0e-64 248.1 165 73.9
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 5.0e-64 248.1 173 71.7
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 5.0e-64 248.1 173 71.7
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 5.0e-64 248.1 173 71.7
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 8.6e-64 247.3 169 71.0
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 2.5e-63 245.7 173 71.7
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 2.5e-63 245.7 163 73.6
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 3.3e-63 245.4 163 74.2
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 5.6e-63 244.6 172 72.7
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 5.6e-63 244.6 174 70.7
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 9.5e-63 243.8 202 64.9
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 1.6e-62 243.0 159 75.5
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.8e-62 242.3 202 64.4
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.8e-62 242.3 202 64.4
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 3.6e-62 241.9 173 70.5
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 3.6e-62 241.9 170 70.0
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 6.2e-62 241.1 159 74.8
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 8.0e-62 240.7 159 74.2
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 1.8e-61 239.6 174 70.1
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 1.8e-61 239.6 159 75.5
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 2.3e-61 239.2 196 64.8
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 2.3e-61 239.2 157 73.2
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.0e-61 238.4 159 73.6
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 8.9e-61 237.3 181 66.3
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 2.0e-60 236.1 168 66.1
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 4.4e-60 235.0 174 67.8
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 9.8e-60 233.8 168 69.0
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 1.7e-59 233.0 208 58.7
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.4e-58 229.9 159 74.2
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 4.1e-58 228.4 173 64.2
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 1.2e-57 226.9 176 66.5
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 2.7e-57 225.7 165 66.1
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 3.5e-57 225.3 225 52.4
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 7.8e-57 224.2 173 63.0
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 1.1e-55 220.3 166 64.5
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 1.5e-55 219.9 171 63.2
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.9e-55 219.5 139 76.3
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 1.9e-55 219.5 219 55.7
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 4.7e-54 214.9 189 63.5
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.1e-53 213.8 211 57.3
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 8.9e-53 210.7 142 71.1
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 3.4e-52 208.8 255 47.8
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 4.1e-50 201.8 187 59.9
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 1.2e-49 200.3 164 64.0
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 4.7e-46 188.3 120 75.8
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.5e-44 183.3 168 54.2
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 4.9e-43 178.3 113 73.5
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 2.1e-41 172.9 173 58.4
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 3.0e-40 169.1 116 78.4
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 1.1e-39 167.2 107 76.6
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 2.6e-36 156.0 107 71.0
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 3.4e-36 155.6 113 61.9
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 3.8e-35 152.1 101 73.3
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 3.8e-35 152.1 116 61.2
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 6.4e-35 151.4 119 66.4
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 1.6e-33 146.7 139 46.8
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 2.7e-33 146.0 96 72.9
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 2.7e-33 146.0 148 47.3
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 1.0e-32 144.1 81 87.7
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 1.0e-32 144.1 81 87.7
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.3e-30 137.1 74 91.9
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 4.8e-30 135.2 103 68.9
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 6.9e-29 131.3 111 58.6
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.1e-26 124.0 100 62.0
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 1.6e-25 120.2 65 92.3
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.1e-21 107.5 111 53.2
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 2.0e-20 103.2 64 76.6
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 5.8e-20 101.7 63 76.2
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 7.6e-20 101.3 111 50.5
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 1.7e-19 100.1 112 37.5
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 1.7e-19 100.1 101 42.6
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 2.9e-19 99.4 104 43.3
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 4.2e-18 95.5 61 70.5
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 3.9e-16 89.0 62 64.5
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 5.1e-16 88.6 62 58.1
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 9.6e-15 84.3 106 37.7
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 1.8e-13 80.1 50 70.0
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 1.5e-12 77.0 136 33.8
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.2e-11 73.2 104 43.3
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 1.3e-06 57.4 32 84.4


User provided reference genes

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