Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G44420 Arabidopsis thaliana HOM05D006965 ORTHO05D008652 7.2e-220 766.9 379 100.0
AL4G43420 Arabidopsis lyrata HOM05D006965 ORTHO05D008652 6.5e-181 637.5 380 85.0
Sp4g26490 Schrenkiella parvula HOM05D006965 ORTHO05D008652 3.6e-171 605.1 379 79.2
Carub.0004s2700 Capsella rubella HOM05D006965 ORTHO05D008652 2.4e-167 592.4 379 78.4
Thhalv10001527m.g Eutrema salsugineum HOM05D006965 ORTHO05D008652 9.2e-167 590.5 379 77.6
BolC4t22170H Brassica oleracea HOM05D006965 ORTHO05D008652 9.5e-164 580.5 375 76.8
BcaB02g08813 Brassica carinata HOM05D006965 ORTHO05D008652 2.6e-161 572.4 380 76.1
BcaC02g12316 Brassica carinata HOM05D006965 ORTHO05D008652 2.0e-158 562.8 375 74.4
C04p05300 Brassica napus HOM05D006965 ORTHO05D008652 2.0e-158 562.8 375 74.4
BraA05t19431Z Brassica rapa HOM05D006965 ORTHO05D008652 6.6e-157 557.8 377 75.3
A05p04570 Brassica napus HOM05D006965 ORTHO05D008652 7.3e-156 554.3 377 74.8
Aa31LG1G25970 Aethionema arabicum HOM05D006965 ORTHO05D008652 2.1e-150 536.2 396 68.9
THA.LOC104827577 Tarenaya hassleriana HOM05D006965 ORTHO05D008652 5.2e-146 521.5 379 67.3
Ciclev10031978m.g Citrus clementina HOM05D006965 ORTHO05D008652 1.3e-120 437.2 382 57.6
Thecc.01G416200 Theobroma cacao HOM05D006965 ORTHO05D008652 3.5e-118 429.1 384 57.0
Gohir.A08G026760 Gossypium hirsutum HOM05D006965 ORTHO05D008652 5.6e-116 421.8 381 57.2
Atru.chr11.2694 Acer truncatum HOM05D006965 ORTHO05D008652 3.7e-115 419.1 383 56.1
CiPaw.13G000900 Carya illinoinensis HOM05D006965 ORTHO05D008652 8.2e-115 417.9 383 56.7
Gohir.D08G037500 Gossypium hirsutum HOM05D006965 ORTHO05D008652 8.2e-115 417.9 381 57.0
Gorai.004G035500 Gossypium raimondii HOM05D006965 ORTHO05D008652 1.4e-114 417.2 381 57.0
Actinidia32338 Actinidia chinensis HOM05D006965 ORTHO05D008652 1.4e-111 407.1 381 55.4
Manes.10G151000 Manihot esculenta HOM05D006965 ORTHO05D008652 1.2e-110 404.1 382 53.9
Potri.009G023200 Populus trichocarpa HOM05D006965 ORTHO05D008652 6.0e-110 401.7 381 53.0
Nn2g15664 Nelumbo nucifera HOM05D006965 ORTHO05D008652 7.9e-110 401.4 383 55.4
Lj3g0017203 Lotus japonicus HOM05D006965 ORTHO05D008652 3.0e-109 399.4 383 51.4
QL04p003153 Quercus lobata HOM05D006965 ORTHO05D008652 3.9e-109 399.1 382 54.2
CSS0026631 Camellia sinensis var. sinensis HOM05D006965 ORTHO05D008652 8.7e-109 397.9 379 55.9
Lalb_Chr25g0283521 Lupinus albus HOM05D006965 ORTHO05D008652 4.3e-108 395.6 375 53.1
Sabra09G0014600 Salix brachista HOM05D006965 ORTHO05D008652 4.3e-108 395.6 363 53.7
QL04p000072 Quercus lobata HOM05D006965 ORTHO05D008652 7.4e-108 394.8 380 53.2
TAR633G1267 Trochodendron aralioides HOM05D006965 ORTHO05D008652 3.7e-107 392.5 379 54.4
QL04p003146 Quercus lobata HOM05D006965 ORTHO05D008652 1.8e-106 390.2 382 53.9
Nitab4.5_0004592g0020 Nicotiana tabacum HOM05D006965 ORTHO05D008652 4.1e-106 389.0 377 52.0
PGSC0003DMG400006312 Solanum tuberosum HOM05D006965 ORTHO05D008652 5.3e-106 388.7 377 51.5
Nitab4.5_0000892g0120 Nicotiana tabacum HOM05D006965 ORTHO05D008652 2.0e-105 386.7 377 52.3
vmacro13617 Vaccinium macrocarpon HOM05D006965 ORTHO05D008652 2.0e-105 386.7 380 52.4
Cfa004805 Carpinus fangiana HOM05D006965 ORTHO05D008652 3.4e-105 386.0 383 53.0
CAN.G261.10 Capsicum annuum HOM05D006965 ORTHO05D008652 5.9e-105 385.2 377 51.7
Haze_10419 Corylus avellana HOM05D006965 ORTHO05D008652 1.7e-104 383.6 361 54.3
Haze_10424 Corylus avellana HOM05D006965 ORTHO05D008652 1.7e-104 383.6 361 54.3
Sopen01g033500 Solanum pennellii HOM05D006965 ORTHO05D008652 1.7e-104 383.6 377 51.2
Haze_10398 Corylus avellana HOM05D006965 ORTHO05D008652 2.9e-104 382.9 387 52.5
Cc02_g27080 Coffea canephora HOM05D006965 ORTHO05D008652 3.8e-104 382.5 379 51.7
MD07G1002700 Malus domestica HOM05D006965 ORTHO05D008652 3.8e-104 382.5 395 50.4
TPR.G11733 Trifolium pratense HOM05D006965 ORTHO05D008652 6.5e-104 381.7 383 50.1
MSTRG.17063 Avicennia marina HOM05D006965 ORTHO05D008652 8.5e-104 381.3 384 52.1
FAN01G2144 Fragaria x ananassa HOM05D006965 ORTHO05D008652 1.1e-103 380.9 379 51.7
MD02G1318500 Malus domestica HOM05D006965 ORTHO05D008652 1.9e-103 380.2 385 51.4
RcHm_v2.0_Chr1g0313421 Rosa chinensis HOM05D006965 ORTHO05D008652 2.5e-103 379.8 379 52.0
Solyc01g073930.3 Solanum lycopersicum HOM05D006965 ORTHO05D008652 2.5e-103 379.8 377 50.4
TWI73G0408 Tripterygium wilfordii HOM05D006965 ORTHO05D008652 1.2e-102 377.5 381 52.2
TAR362G1148 Trochodendron aralioides HOM05D006965 ORTHO05D008652 2.7e-102 376.3 317 61.2
Glyma.08G149400 Glycine max HOM05D006965 ORTHO05D008652 7.9e-102 374.8 383 50.1
Phvul.005G039600 Phaseolus vulgaris HOM05D006965 ORTHO05D008652 1.4e-101 374.0 379 50.1
AUR62012162 Chenopodium quinoa HOM05D006965 ORTHO05D008652 1.8e-101 373.6 375 50.9
Psat1g128200 Pisum sativum HOM05D006965 ORTHO05D008652 2.3e-101 373.2 383 50.1
FvH4_7g00170 Fragaria vesca HOM05D006965 ORTHO05D008652 6.7e-101 371.7 397 49.4
CsaV3_3G032450 Cucumis sativus L. HOM05D006965 ORTHO05D008652 1.1e-100 370.9 381 49.9
GSVIVG01001368001 Vitis vinifera HOM05D006965 ORTHO05D008652 1.1e-100 370.9 349 54.2
Rhsim07G0050600 Rhododendron simsii HOM05D006965 ORTHO05D008652 4.3e-100 369.0 380 48.4
CANSAT78G1981 Cannabis sativa HOM05D006965 ORTHO05D008652 5.7e-100 368.6 383 49.9
Medtr2g060820 Medicago truncatula HOM05D006965 ORTHO05D008652 1.3e-99 367.5 357 50.7
Sc12g0002350 Simmondsia chinensis HOM05D006965 ORTHO05D008652 2.2e-99 366.7 379 49.1
ClCG10G012640 Citrullus lanatus HOM05D006965 ORTHO05D008652 1.1e-98 364.4 389 49.4
VMungo1080G1640 Vigna mungo HOM05D006965 ORTHO05D008652 1.1e-98 364.4 359 51.0
MBI04_g33895_MAGBIO Magnolia biondii HOM05D006965 ORTHO05D008652 2.4e-98 363.2 382 49.0
PSO339G5860 Papaver somniferum HOM05D006965 ORTHO05D008652 2.6e-97 359.8 381 49.1
Eucgr.G02572 Eucalyptus grandis HOM05D006965 ORTHO05D008652 3.4e-97 359.4 382 47.9
Aqoxy1G00028 Aquilegia oxysepala HOM05D006965 ORTHO05D008652 4.5e-97 359.0 380 48.9
Ca_02931_v3 Cicer arietinum L. HOM05D006965 ORTHO05D008652 7.7e-97 358.2 358 49.4
Migut.B01364 Erythranthe guttata HOM05D006965 ORTHO05D008652 1.3e-96 357.5 377 50.4
CARHR139580 Cardamine hirsuta HOM05D006965 ORTHO05D008652 1.7e-96 357.1 228 74.6
SGA_v2.0_scaffold5G03114 Striga asiatica HOM05D006965 ORTHO05D008652 1.7e-96 357.1 376 51.3
SalBow5G3371 Salvia bowleyana HOM05D006965 ORTHO05D008652 1.2e-94 350.9 360 49.4
AUR62022798 Chenopodium quinoa HOM05D006965 ORTHO05D008652 2.1e-94 350.1 375 48.0
Dinv43490 Davidia involucrata HOM05D006965 ORTHO05D008652 2.7e-94 349.7 276 64.5
FAN10G4273 Fragaria x ananassa HOM05D006965 ORTHO05D008652 3.6e-94 349.4 394 47.5
PSO384G4145 Papaver somniferum HOM05D006965 ORTHO05D008652 4.7e-94 349.0 381 47.2
PGR004G0492 Punica granatum HOM05D006965 ORTHO05D008652 1.8e-93 347.1 317 55.8
ECA248G1794 Erigeron canadensis HOM05D006965 ORTHO05D008652 2.3e-93 346.7 380 47.6
FAN01G0465 Fragaria x ananassa HOM05D006965 ORTHO05D008652 3.0e-93 346.3 366 49.5
Sed0016917 Sechium edule HOM05D006965 ORTHO05D008652 3.9e-93 345.9 380 48.4
MELO3C023943.2 Cucumis melo HOM05D006965 ORTHO05D008652 5.1e-93 345.5 378 47.9
Prupe.2G004200 Prunus persica HOM05D006965 ORTHO05D008652 4.8e-91 339.0 306 54.9
FAN06G0111 Fragaria x ananassa HOM05D006965 ORTHO05D008652 8.2e-91 338.2 380 47.9
Hund16040 Selenicereus undatus HOM05D006965 ORTHO05D008652 3.1e-90 336.3 362 47.0
Hma1.2p1_2998F.1_g331493 Hydrangea macrophylla HOM05D006965 ORTHO05D008652 2.9e-88 329.7 255 64.3
Hma1.2p1_2998F.1_g331496 Hydrangea macrophylla HOM05D006965 ORTHO05D008652 3.2e-87 326.2 251 64.5
ATR0605G047 Amborella trichopoda HOM05D006965 ORTHO05D008652 5.5e-87 325.5 378 45.8
Os06g0618150 Oryza sativa ssp. japonica HOM05D006965 ORTHO05D008652 3.6e-86 322.8 361 46.5
EL10Ac2g04673 Beta vulgaris HOM05D006965 ORTHO05D008652 1.4e-85 320.9 315 52.1
Zm00001eb275720 Zea mays HOM05D006965 ORTHO05D008652 1.6e-81 307.4 380 43.9
COL.COLO4_23913 Corchorus olitorius HOM05D006280 ORTHO05D008652 9.4e-79 298.1 270 57.8
HanXRQChr01g0018681 Helianthus annuus HOM05D006965 ORTHO05D008652 2.1e-78 297.0 375 43.2
Duzib114G0529 Durio zibethinus HOM05D006965 ORTHO05D008652 3.6e-78 296.2 380 44.7
Ah.16g102760 Amaranthus hybridus HOM05D006965 ORTHO05D008652 7.5e-76 288.5 376 43.4
FAN03G0167 Fragaria x ananassa HOM05D006965 ORTHO05D008652 6.3e-75 285.4 260 55.4
Lsat_1_v5_gn_1_110081 Lactuca sativa HOM05D006965 ORTHO05D008652 1.0e-72 278.1 307 48.5
CDE05G0249 Ceratophyllum demersum HOM05D006965 ORTHO05D008652 8.5e-72 275.0 295 48.8
Peaxi162Scf00878g00321 Petunia axillaris HOM05D006965 ORTHO05D008652 3.2e-71 273.1 261 53.3
unitig_26.g9594 Utricularia gibba HOM05D001227 ORTHO05D001082 1.5e-68 264.2 379 42.2
HPP92_002651 Vanilla planifolia HOM05D006965 ORTHO05D008652 7.0e-66 255.4 267 46.4
Cfa022003 Carpinus fangiana HOM05D006965 ORTHO05D008652 2.8e-62 243.4 200 59.5
DCAR_029603 Daucus carota HOM05D006965 ORTHO05D008652 2.9e-56 223.4 323 42.7
Mapoly0087s0073 Marchantia polymorpha HOM05D006965 ORTHO05D008652 1.4e-53 214.5 388 33.8
arahy.Tifrunner.gnm1.ann1.Z1UMC7 Arachis hypogaea HOM05D006965 ORTHO05D008652 2.6e-52 210.3 219 50.7
arahy.Tifrunner.gnm1.ann1.ZJD8NP Arachis hypogaea HOM05D006965 ORTHO05D008652 9.5e-47 191.8 247 44.1
SEGI_12556 Sequoiadendron giganteum HOM05D006965 ORTHO05D008652 2.1e-38 164.1 157 51.6
Eucgr.L03457 Eucalyptus grandis HOM05D006965 ORTHO05D008652 7.5e-36 155.6 162 43.2
Haze_10414 Corylus avellana HOM05D006965 ORTHO05D008652 6.8e-29 132.5 100 62.0
SMO132G0001 Selaginella moellendorffii HOM05D006965 ORTHO05D008652 1.3e-27 128.3 335 31.3
SMO147G0191 Selaginella moellendorffii HOM05D020017 ORTHO05D022314 5.4e-26 122.9 196 38.8
Oeu009369.1 Olea europaea HOM05D006965 ORTHO05D008652 3.3e-23 113.6 144 39.6
Cpa.g.sc189.20 Carica papaya HOM05D006965 ORTHO05D008652 2.1e-14 84.3 104 40.4
Cpa.g.sc189.19 Carica papaya HOM05D006965 ORTHO05D008652 2.8e-14 84.0 84 54.8
TPR.G14363 Trifolium pratense HOM05D006965 ORTHO05D008652 3.6e-14 83.6 69 59.4


User provided reference genes

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