Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 6.0e-121 437.6 228 100.0
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 9.5e-119 430.3 228 98.2
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 3.4e-116 421.8 228 96.5
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 8.4e-115 417.2 228 95.2
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 1.2e-113 413.3 228 93.9
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 1.8e-109 399.4 228 93.0
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 8.4e-107 390.6 228 88.2
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 8.7e-104 380.6 229 90.0
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 1.5e-103 379.8 229 90.0
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 9.6e-103 377.1 229 90.8
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 4.8e-102 374.8 228 88.6
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 1.4e-101 373.2 229 88.6
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 1.8e-101 372.9 228 88.6
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 1.8e-101 372.9 228 88.6
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 4.0e-101 371.7 228 89.0
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 1.5e-100 369.8 228 89.0
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 1.4e-98 363.2 228 82.0
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 7.1e-98 360.9 250 81.2
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 4.6e-97 358.2 228 79.8
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 1.3e-96 356.7 219 88.1
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 6.7e-96 354.4 242 82.2
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 3.7e-94 348.6 228 79.4
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 5.3e-93 344.7 217 87.1
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 8.7e-80 300.8 206 75.7
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 9.7e-79 297.4 198 75.8
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 5.3e-77 291.6 205 73.2
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 1.5e-76 290.0 171 82.5
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 2.0e-76 289.7 235 65.1
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 2.6e-76 289.3 207 72.5
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 2.6e-76 289.3 185 78.9
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 3.4e-76 288.9 193 74.6
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 7.7e-76 287.7 213 69.5
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 7.7e-76 287.7 216 69.4
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 3.8e-75 285.4 186 76.9
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 5.0e-75 285.0 184 76.6
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 6.5e-75 284.6 234 67.1
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 1.4e-74 283.5 226 67.3
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 2.5e-74 282.7 184 75.5
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 1.6e-73 280.0 194 74.7
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 1.6e-73 280.0 228 64.5
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 2.1e-73 279.6 218 67.0
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.1e-73 279.6 211 69.7
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.1e-73 279.6 192 74.0
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 2.1e-73 279.6 192 74.0
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 2.1e-73 279.6 210 67.6
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 2.1e-73 279.6 209 69.4
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 2.1e-73 279.6 205 69.8
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 3.6e-73 278.9 222 65.8
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 6.1e-73 278.1 189 73.5
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 6.1e-73 278.1 229 64.2
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 6.1e-73 278.1 204 68.1
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 7.9e-73 277.7 176 77.3
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 7.9e-73 277.7 231 64.1
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.0e-72 277.3 192 73.4
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.0e-72 277.3 192 73.4
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 2.3e-72 276.2 171 77.2
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 3.0e-72 275.8 210 68.6
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 3.0e-72 275.8 189 72.5
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 5.1e-72 275.0 165 80.6
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 5.1e-72 275.0 192 72.9
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.1e-71 273.9 227 65.2
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 3.3e-71 272.3 236 63.1
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 3.3e-71 272.3 200 71.0
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 5.7e-71 271.6 200 78.5
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 5.7e-71 271.6 227 64.8
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 5.7e-71 271.6 170 78.2
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 7.4e-71 271.2 182 74.2
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 7.4e-71 271.2 182 74.2
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 9.7e-71 270.8 182 74.2
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 1.3e-70 270.4 191 73.8
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 2.2e-70 269.6 164 80.5
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 2.8e-70 269.2 208 68.3
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 3.7e-70 268.9 183 72.1
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 6.3e-70 268.1 186 72.6
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 1.1e-69 267.3 227 65.2
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 2.4e-69 266.2 205 67.8
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 4.1e-69 265.4 185 73.5
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 4.1e-69 265.4 216 63.0
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 5.3e-69 265.0 211 68.2
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 2.6e-68 262.7 202 70.3
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 2.6e-68 262.7 188 69.7
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 3.4e-68 262.3 188 70.2
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 2.9e-67 259.2 178 73.0
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 2.9e-67 259.2 224 60.7
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 5.0e-67 258.5 216 62.5
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 6.5e-67 258.1 228 60.5
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 6.5e-67 258.1 190 66.8
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 8.5e-67 257.7 192 67.2
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-66 256.9 199 67.8
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 1.4e-66 256.9 192 67.2
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 3.2e-66 255.8 185 69.7
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 5.5e-66 255.0 224 62.9
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 1.2e-65 253.8 195 66.2
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 1.6e-65 253.4 196 67.3
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 2.7e-65 252.7 189 69.3
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 1.0e-64 250.8 195 65.1
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.0e-64 250.8 212 65.1
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 1.0e-64 250.8 215 63.7
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 1.8e-64 250.0 218 58.7
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 2.3e-64 249.6 224 57.6
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 2.3e-64 249.6 162 74.7
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 3.0e-64 249.2 212 64.6
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 3.0e-64 249.2 146 82.9
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 3.0e-64 249.2 164 74.4
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 6.7e-64 248.1 149 78.5
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 6.7e-64 248.1 234 59.8
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 1.1e-63 247.3 201 63.7
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 1.1e-63 247.3 220 59.5
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 1.1e-63 247.3 189 68.3
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 2.0e-63 246.5 234 59.0
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 2.0e-63 246.5 195 64.1
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 4.4e-63 245.4 189 66.7
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 7.4e-63 244.6 207 64.3
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 2.2e-62 243.0 180 70.0
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 2.2e-62 243.0 170 68.2
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 3.7e-62 242.3 181 69.6
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 6.3e-62 241.5 178 68.5
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 6.3e-62 241.5 184 66.8
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 1.8e-61 240.0 195 63.1
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 3.1e-61 239.2 217 59.0
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 2.6e-60 236.1 181 65.7
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 1.3e-59 233.8 165 69.1
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 2.9e-59 232.6 210 61.0
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 1.1e-58 230.7 157 66.2
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 7.2e-58 228.0 213 55.9
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 1.0e-56 224.2 133 80.5
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 4.4e-55 218.8 232 53.4
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 9.7e-55 217.6 139 74.1
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 1.3e-54 217.2 139 71.9
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 4.8e-54 215.3 127 78.7
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 6.3e-54 214.9 127 79.5
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 8.2e-54 214.5 132 78.0
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 3.6e-49 199.1 134 72.4
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 2.3e-48 196.4 139 74.1
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 6.8e-48 194.9 144 62.5
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 2.6e-47 193.0 185 60.0
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 5.7e-47 191.8 143 68.5
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 4.8e-46 188.7 194 54.6
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 6.3e-46 188.3 153 66.0
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 7.0e-45 184.9 145 59.3
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.0e-44 183.3 187 53.5
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 5.5e-42 175.3 116 69.8
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 1.6e-41 173.7 106 78.3
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 5.2e-40 168.7 97 81.4
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 1.3e-38 164.1 112 79.5
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.8e-38 162.9 139 62.6
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 2.0e-36 156.8 111 76.6
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 5.5e-34 148.7 118 66.1
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 9.5e-34 147.9 191 40.3
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 6.8e-32 141.7 132 50.0
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 8.9e-32 141.4 77 87.0
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 2.6e-31 139.8 127 63.0
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 5.7e-31 138.7 189 47.6
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 1.3e-30 137.5 75 84.0
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 1.4e-29 134.0 77 81.8
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 9.2e-29 131.3 216 44.0
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 4.6e-28 129.0 189 46.0
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 2.3e-27 126.7 106 63.2
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 9.8e-23 111.3 71 74.6
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 4.9e-22 109.0 70 78.6
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.0e-19 101.3 72 70.8
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 1.6e-17 94.0 47 89.4
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 4.1e-13 79.3 53 75.5
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 5.4e-13 79.0 43 83.7
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 7.1e-13 78.6 42 85.7
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 9.2e-13 78.2 42 83.3
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 1.0e-11 74.7 125 43.2
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 2.1e-09 67.0 37 78.4
AagrBONN_evm.TU.Sc2ySwM_344.4461 Anthoceros agrestis HOM05D004281 ORTHO05D004839 4.0e-08 62.8 44 68.2
Hma1.2p1_0872F.1_g231180 Hydrangea macrophylla HOM05D004281 ORTHO05D004839 1.5e-07 60.8 143 37.8
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 3.4e-07 59.7 96 33.3
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 7.6e-07 58.5 32 81.2


User provided reference genes

Program Settings