Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G43990 Arabidopsis thaliana HOM05D007315 ORTHO05D008940 0.0e+00 1202.2 633 100.0
AL4G42870 Arabidopsis lyrata HOM05D007315 ORTHO05D008940 1.5e-310 1068.9 633 90.0
Carub.0004s2655 Capsella rubella HOM05D007315 ORTHO05D008940 3.9e-295 1017.7 633 86.9
Sp4g26080 Schrenkiella parvula HOM05D007315 ORTHO05D008940 2.1e-256 889.0 646 76.9
Thhalv10001359m.g Eutrema salsugineum HOM05D007315 ORTHO05D008940 1.3e-250 869.8 642 76.6
CARHR139160 Cardamine hirsuta HOM05D007315 ORTHO05D008940 2.6e-235 818.9 643 76.0
A05p04140 Brassica napus HOM05D007315 ORTHO05D008940 1.5e-161 573.9 626 60.9
BolC4t22121H Brassica oleracea HOM05D007315 ORTHO05D008940 2.5e-161 573.2 634 61.4
BraA05t19400Z Brassica rapa HOM05D007315 ORTHO05D008940 8.2e-152 541.6 630 59.4
THA.LOC104804323 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 9.3e-148 528.1 684 52.0
C04p04910 Brassica napus HOM05D007315 ORTHO05D008940 1.3e-146 524.2 630 57.6
THA.LOC104802348 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 7.4e-137 491.9 685 49.8
BcaC02g12347 Brassica carinata HOM05D007315 ORTHO05D008940 3.6e-131 473.0 630 54.9
Cfa008519 Carpinus fangiana HOM05D007315 ORTHO05D008940 2.3e-74 284.3 702 36.3
Haze_11126 Corylus avellana HOM05D007315 ORTHO05D008940 3.8e-72 276.9 702 36.0
Potri.007G145400 Populus trichocarpa HOM05D007315 ORTHO05D008940 6.4e-72 276.2 718 34.7
Ciclev10019166m.g Citrus clementina HOM05D007315 ORTHO05D008940 1.1e-68 265.4 707 34.4
Potri.017G002200 Populus trichocarpa HOM05D007315 ORTHO05D008940 1.5e-68 265.0 711 34.7
Sabra07G0115600 Salix brachista HOM05D007315 ORTHO05D008940 1.9e-68 264.6 703 33.7
TWI15G1252 Tripterygium wilfordii HOM05D007315 ORTHO05D008940 5.6e-68 263.1 691 34.2
Prupe.7G270200 Prunus persica HOM05D007315 ORTHO05D008940 1.8e-66 258.1 645 36.7
Cpa.g.sc151.10 Carica papaya HOM05D007315 ORTHO05D008940 7.6e-65 252.7 638 34.2
GSVIVG01038254001 Vitis vinifera HOM05D007315 ORTHO05D008940 6.4e-64 249.6 641 36.0
Sabra17G0006200 Salix brachista HOM05D007315 ORTHO05D008940 3.5e-62 243.8 706 33.6
QL10p064604 Quercus lobata HOM05D007315 ORTHO05D008940 1.7e-61 241.5 717 34.9
RcHm_v2.0_Chr2g0084511 Rosa chinensis HOM05D007315 ORTHO05D008940 2.3e-61 241.1 681 34.1
CiPaw.02G125100 Carya illinoinensis HOM05D007315 ORTHO05D008940 3.9e-61 240.4 699 34.8
FAN23G0376 Fragaria x ananassa HOM05D007315 ORTHO05D008940 1.9e-60 238.0 689 33.8
QL10p065726 Quercus lobata HOM05D007315 ORTHO05D008940 1.6e-59 235.0 716 34.6
Atru.chr3.1974 Acer truncatum HOM05D007315 ORTHO05D008940 2.8e-59 234.2 662 34.9
Duzib128G0490 Durio zibethinus HOM05D007315 ORTHO05D008940 2.8e-59 234.2 639 34.4
Manes.05G207100 Manihot esculenta HOM05D007315 ORTHO05D008940 2.4e-58 231.1 717 33.6
FAN26G2088 Fragaria x ananassa HOM05D007315 ORTHO05D008940 1.5e-57 228.4 651 34.6
FAN26G2097 Fragaria x ananassa HOM05D007315 ORTHO05D008940 1.5e-57 228.4 651 34.6
FAN28G1745 Fragaria x ananassa HOM05D007315 ORTHO05D008940 5.8e-57 226.5 650 33.1
Gorai.011G004300 Gossypium raimondii HOM05D007315 ORTHO05D008940 3.8e-56 223.8 633 33.8
Sed0008861 Sechium edule HOM05D007315 ORTHO05D008940 7.1e-55 219.5 696 31.5
CiPaw.01G202000 Carya illinoinensis HOM05D007315 ORTHO05D008940 3.5e-54 217.2 652 34.8
Rhsim09G0003400 Rhododendron simsii HOM05D007315 ORTHO05D008940 1.0e-53 215.7 656 32.5
MD15G1142800 Malus domestica HOM05D007315 ORTHO05D008940 1.9e-52 211.5 705 33.0
Gohir.A10G003901 Gossypium hirsutum HOM05D007315 ORTHO05D008940 9.6e-52 209.1 700 31.1
Atru.chr3.1981 Acer truncatum HOM05D007315 ORTHO05D008940 1.8e-50 204.9 448 37.7
Dinv33248 Davidia involucrata HOM05D007315 ORTHO05D008940 1.8e-50 204.9 646 31.7
Gohir.D10G003900 Gossypium hirsutum HOM05D007315 ORTHO05D008940 2.6e-49 201.1 687 32.9
FvH4_1g00220 Fragaria vesca HOM05D007315 ORTHO05D008940 7.6e-49 199.5 648 31.8
CANSAT78G2341 Cannabis sativa HOM05D007315 ORTHO05D008940 1.3e-48 198.7 648 30.6
CSS0005699 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 1.7e-48 198.4 579 32.1
Thecc.05G001400 Theobroma cacao HOM05D007315 ORTHO05D008940 3.8e-48 197.2 693 31.5
CsaV3_2G011220 Cucumis sativus L. HOM05D007315 ORTHO05D008940 2.7e-46 191.0 678 31.6
ClCG06G009750 Citrullus lanatus HOM05D007315 ORTHO05D008940 3.5e-46 190.7 708 30.1
MELO3C020340.2 Cucumis melo HOM05D007315 ORTHO05D008940 1.0e-45 189.1 665 30.5
COL.COLO4_23477 Corchorus olitorius HOM05D007315 ORTHO05D008940 1.8e-45 188.3 516 34.1
arahy.Tifrunner.gnm1.ann1.K0K7GF Arachis hypogaea HOM05D007315 ORTHO05D008940 2.3e-45 188.0 682 31.4
VMungo0720G0938 Vigna mungo HOM05D007315 ORTHO05D008940 4.3e-44 183.7 679 30.5
Eucgr.A00422 Eucalyptus grandis HOM05D007315 ORTHO05D008940 7.4e-44 183.0 653 29.2
Lj5g0028022 Lotus japonicus HOM05D007315 ORTHO05D008940 4.0e-42 177.2 705 30.2
Glyma.20G202800 Glycine max HOM05D007315 ORTHO05D008940 1.2e-41 175.6 692 29.3
TAR362G0103 Trochodendron aralioides HOM05D007315 ORTHO05D008940 1.2e-41 175.6 629 28.3
Glyma.10G188000 Glycine max HOM05D007315 ORTHO05D008940 1.0e-40 172.6 710 29.0
MD00G1086900 Malus domestica HOM05D007315 ORTHO05D008940 2.9e-40 171.0 587 33.2
arahy.Tifrunner.gnm1.ann1.BRX18T Arachis hypogaea HOM05D007315 ORTHO05D008940 6.5e-40 169.9 664 28.8
Lalb_Chr02g0150561 Lupinus albus HOM05D007315 ORTHO05D008940 1.4e-39 168.7 701 29.7
AUR62002486 Chenopodium quinoa HOM05D007315 ORTHO05D008940 5.5e-39 166.8 507 33.5
PSO732G0261 Papaver somniferum HOM05D007315 ORTHO05D008940 2.7e-38 164.5 452 34.1
Phvul.007G128900 Phaseolus vulgaris HOM05D007315 ORTHO05D008940 6.0e-38 163.3 650 29.7
Nn1g09432 Nelumbo nucifera HOM05D007315 ORTHO05D008940 7.9e-38 162.9 742 28.3
Oeu018063.1 Olea europaea HOM05D007315 ORTHO05D008940 3.9e-37 160.6 478 33.1
Peaxi162Scf00057g00225 Petunia axillaris HOM05D007315 ORTHO05D008940 5.1e-37 160.2 565 31.3
PGR042G2132 Punica granatum HOM05D007315 ORTHO05D008940 5.7e-36 156.8 672 31.4
EL10Ac3g06171 Beta vulgaris HOM05D007315 ORTHO05D008940 7.4e-36 156.4 640 30.5
CSS0008240 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 1.3e-35 155.6 595 29.1
DCAR_027494 Daucus carota HOM05D007315 ORTHO05D008940 2.1e-35 154.8 682 28.7
AUR62023706 Chenopodium quinoa HOM05D007315 ORTHO05D008940 3.7e-35 154.1 477 33.1
Ca_09817_v3 Cicer arietinum L. HOM05D007315 ORTHO05D008940 1.1e-34 152.5 706 28.8
Medtr1g073930 Medicago truncatula HOM05D007315 ORTHO05D008940 1.1e-34 152.5 566 29.7
QL10p064445 Quercus lobata HOM05D007315 ORTHO05D008940 2.2e-32 144.8 380 37.9
TPR.G26430 Trifolium pratense HOM05D007315 ORTHO05D008940 2.2e-32 144.8 588 30.1
PGSC0003DMG400020383 Solanum tuberosum HOM05D007315 ORTHO05D008940 1.1e-31 142.5 679 30.8
Sopen12g009190 Solanum pennellii HOM05D007315 ORTHO05D008940 4.2e-31 140.6 657 31.1
Nitab4.5_0000160g0040 Nicotiana tabacum HOM05D007315 ORTHO05D008940 3.6e-30 137.5 582 30.4
Nitab4.5_0002789g0030 Nicotiana tabacum HOM05D007315 ORTHO05D008940 3.6e-30 137.5 572 29.7
Solyc12g017970.1 Solanum lycopersicum HOM05D007315 ORTHO05D008940 3.6e-30 137.5 657 30.6
ECA238G3268 Erigeron canadensis HOM05D007315 ORTHO05D008940 4.6e-30 137.1 468 30.1
HanXRQChr14g0438301 Helianthus annuus HOM05D007315 ORTHO05D008940 6.1e-30 136.7 461 28.4
Ah.13g073150 Amaranthus hybridus HOM05D007315 ORTHO05D008940 3.0e-29 134.4 539 31.7
Hma1.2p1_1085F.1_g255400 Hydrangea macrophylla HOM05D007315 ORTHO05D008940 4.3e-28 130.6 457 28.9
Ah.07g203260 Amaranthus hybridus HOM05D007315 ORTHO05D008940 5.7e-28 130.2 540 30.2
Psat6g133000 Pisum sativum HOM05D007315 ORTHO05D008940 9.7e-28 129.4 653 27.4
Sc19g0002390 Simmondsia chinensis HOM05D007315 ORTHO05D008940 1.3e-24 119.0 271 36.5
Migut.N03024 Erythranthe guttata HOM05D007315 ORTHO05D008940 5.5e-23 113.6 580 27.9
COL.COLO4_20289 Corchorus olitorius HOM05D007315 ORTHO05D008940 8.8e-21 106.3 263 34.6
MBI07_g42068_MAGBIO Magnolia biondii HOM05D007315 ORTHO05D008940 1.5e-20 105.5 528 27.7
MSTRG.24547 Avicennia marina HOM05D007315 ORTHO05D008940 7.4e-20 103.2 604 29.0
CDE04G0399 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 1.0e-16 92.8 488 27.3
SalBow3G0669 Salvia bowleyana HOM05D007315 ORTHO05D008940 8.5e-16 89.7 648 28.7
Aqoxy5G03722 Aquilegia oxysepala HOM05D007315 ORTHO05D008940 4.2e-15 87.4 673 25.7
CDE07G0865 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 6.1e-14 83.6 503 26.8
Duzib093G0367 Durio zibethinus HOM05D007315 ORTHO05D008940 7.4e-12 76.6 361 27.1
HPP92_007592 Vanilla planifolia HOM05D007315 ORTHO05D008940 1.2e-09 69.3 438 26.0
SGA_v2.0_scaffold25G11016 Striga asiatica HOM05D007315 ORTHO05D008940 7.7e-09 66.6 310 29.7
unitig_578.g16246 Utricularia gibba HOM05D007315 ORTHO05D008940 1.0e-08 66.2 290 31.4
ATR0743G232 Amborella trichopoda HOM05D007315 ORTHO05D008940 1.7e-08 65.5 168 35.1
Os11g0247500 Oryza sativa ssp. japonica HOM05D019859 ORTHO05D008940 8.5e-08 63.2 108 38.0
Actinidia39246 Actinidia chinensis HOM05D007315 ORTHO05D008940 2.5e-07 61.6 291 27.8
SGA_v2.0_scaffold19G08894 Striga asiatica HOM05D007315 ORTHO05D008940 3.6e-06 57.8 326 27.0
SEGI_20190 Sequoiadendron giganteum HOM05D007315 ORTHO05D008940 4.7e-06 57.4 109 39.4


User provided reference genes

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