Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 2.3e-133 478.8 228 100.0
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 3.1e-125 451.8 229 93.9
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 9.9e-124 446.8 228 90.8
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 2.4e-114 415.6 229 85.2
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 3.2e-114 415.2 215 88.8
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 2.1e-113 412.5 228 83.8
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 4.6e-113 411.4 228 83.3
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 1.0e-112 410.2 228 82.9
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 1.3e-110 403.3 228 82.5
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 1.3e-110 403.3 228 82.5
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 2.1e-110 402.5 237 82.3
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 6.2e-110 401.0 287 68.3
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 2.4e-109 399.1 228 82.0
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 6.9e-109 397.5 228 81.6
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 2.0e-108 396.0 228 80.7
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 2.6e-108 395.6 228 81.6
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 1.3e-107 393.3 228 80.3
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 2.9e-107 392.1 224 81.2
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 9.3e-106 387.1 228 79.8
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 9.3e-106 387.1 228 79.4
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 2.3e-104 382.5 229 78.2
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 1.6e-102 376.3 215 81.4
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 6.2e-102 374.4 218 79.8
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 1.8e-101 372.9 215 80.0
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 2.6e-100 369.0 218 78.4
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 3.8e-99 365.2 229 72.9
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 2.8e-86 322.4 213 72.3
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 7.6e-84 314.3 180 84.4
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 9.4e-74 280.8 191 63.9
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 2.1e-73 279.6 192 64.6
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 2.1e-73 279.6 192 61.5
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 2.7e-73 279.3 192 63.0
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 3.6e-73 278.9 192 63.0
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 4.6e-73 278.5 196 63.3
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 6.1e-73 278.1 226 56.6
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 6.1e-73 278.1 192 62.5
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 6.1e-73 278.1 192 64.6
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 1.0e-72 277.3 195 63.6
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 1.0e-72 277.3 192 63.0
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 1.4e-72 276.9 191 64.4
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 1.8e-72 276.6 194 62.4
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 1.8e-72 276.6 194 64.9
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 2.3e-72 276.2 192 63.5
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 2.3e-72 276.2 192 63.0
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 3.9e-72 275.4 192 63.5
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 3.9e-72 275.4 192 62.5
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 5.1e-72 275.0 190 65.8
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 1.5e-71 273.5 192 63.5
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 2.0e-71 273.1 192 62.0
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 2.0e-71 273.1 214 58.4
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 3.3e-71 272.3 192 63.0
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 7.4e-71 271.2 193 61.1
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 7.4e-71 271.2 192 63.0
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 7.4e-71 271.2 192 63.0
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 1.3e-70 270.4 194 60.8
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 1.7e-70 270.0 193 64.2
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 1.7e-70 270.0 192 62.5
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 1.7e-70 270.0 205 58.0
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 1.7e-70 270.0 190 62.1
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 2.2e-70 269.6 192 62.5
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 2.8e-70 269.2 194 62.4
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 6.3e-70 268.1 191 61.3
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 1.1e-69 267.3 194 60.8
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 1.1e-69 267.3 190 62.6
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 1.4e-69 266.9 191 61.3
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 1.4e-69 266.9 192 62.5
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 1.8e-69 266.5 195 61.0
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 2.4e-69 266.2 196 59.7
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 2.4e-69 266.2 193 61.7
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 3.1e-69 265.8 193 61.7
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 3.1e-69 265.8 194 59.3
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 4.1e-69 265.4 200 58.0
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 5.3e-69 265.0 193 61.7
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 6.9e-69 264.6 181 65.2
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 1.2e-68 263.8 194 58.8
BolC4t22114H Brassica oleracea HOM05D004249 ORTHO05D005015 2.6e-68 262.7 164 75.6
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 2.6e-68 262.7 192 59.4
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 3.4e-68 262.3 192 59.4
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 5.9e-68 261.5 193 61.7
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 7.7e-68 261.2 194 57.2
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 1.0e-67 260.8 191 60.7
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 1.0e-67 260.8 211 55.5
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 1.0e-67 260.8 200 60.5
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 1.3e-67 260.4 194 58.2
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.3e-67 260.4 207 55.6
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 1.7e-67 260.0 191 59.7
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 2.2e-67 259.6 181 61.3
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 2.9e-67 259.2 194 57.2
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.9e-67 259.2 194 57.2
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 2.9e-67 259.2 182 62.6
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 8.5e-67 257.7 183 62.8
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 1.1e-66 257.3 194 57.7
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.1e-66 257.3 214 52.8
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.1e-66 257.3 215 54.4
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 3.2e-66 255.8 200 59.5
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 3.2e-66 255.8 194 57.7
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 1.6e-65 253.4 181 61.9
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.1e-65 253.1 192 55.2
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 3.6e-65 252.3 194 55.7
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 3.6e-65 252.3 194 55.7
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 4.7e-65 251.9 191 58.6
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 1.0e-64 250.8 194 56.7
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 1.0e-64 250.8 182 60.4
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 1.4e-64 250.4 171 66.1
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 3.9e-64 248.8 188 58.5
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 6.7e-64 248.1 179 60.9
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 2.6e-63 246.1 182 59.9
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 3.3e-63 245.7 180 58.9
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 5.7e-63 245.0 194 56.7
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 2.2e-62 243.0 190 56.3
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 2.8e-62 242.7 188 55.9
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 1.8e-61 240.0 227 50.7
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 2.4e-61 239.6 191 56.5
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 3.1e-61 239.2 184 59.2
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 5.3e-61 238.4 193 53.4
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 5.3e-61 238.4 193 53.4
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 5.3e-61 238.4 193 53.4
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 9.1e-61 237.7 207 51.7
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 2.6e-60 236.1 176 56.2
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 4.5e-60 235.3 193 53.4
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 4.5e-60 235.3 193 53.4
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 3.2e-58 229.2 210 52.4
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 4.2e-58 228.8 191 56.5
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 8.0e-57 224.6 193 53.4
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 8.0e-57 224.6 162 61.1
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 3.9e-56 222.2 203 50.2
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 1.1e-55 220.7 177 55.9
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 1.5e-55 220.3 162 60.5
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 1.4e-53 213.8 194 49.0
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 2.4e-53 213.0 200 51.0
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 1.3e-51 207.2 145 62.1
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 1.1e-50 204.1 143 61.5
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 1.2e-49 200.7 192 52.1
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 2.3e-48 196.4 150 61.3
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 2.6e-47 193.0 139 61.9
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 5.7e-47 191.8 154 59.7
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 9.8e-47 191.0 198 47.5
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 1.6e-41 173.7 194 45.4
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 1.8e-37 160.2 113 61.1
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 6.6e-35 151.8 117 59.0
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 2.8e-33 146.4 206 38.3
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 6.1e-33 145.2 200 42.0
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 1.3e-27 127.5 181 37.6
AUR62023720 Chenopodium quinoa HOM05D004249 ORTHO05D005015 5.6e-26 122.1 96 58.3
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 2.8e-25 119.8 180 36.7
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 4.7e-25 119.0 81 61.7
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 3.1e-24 116.3 180 36.1
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 3.1e-24 116.3 180 36.1
THA.LOC104824119 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.5e-23 114.0 73 65.8
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 9.8e-23 111.3 188 34.0
MELO3C033208.2 Cucumis melo HOM05D004249 ORTHO05D005015 9.8e-23 111.3 73 68.5
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 3.7e-22 109.4 73 65.8
HPP92_011580 Vanilla planifolia HOM05D004249 ORTHO05D005015 2.4e-21 106.7 69 63.8
Cre04.g215600 Chlamydomonas reinhardtii HOM05D004249 ORTHO05D005015 1.7e-19 100.5 206 32.0
MBI10_g23575_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 1.7e-19 100.5 62 66.1
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 4.3e-18 95.9 76 52.6
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 4.3e-18 95.9 79 54.4
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 6.8e-16 88.6 76 50.0
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 3.4e-15 86.3 69 52.2
HPP92_011581 Vanilla planifolia HOM05D004249 ORTHO05D005015 6.4e-14 82.0 54 59.3
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 1.4e-13 80.9 148 33.1
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 1.4e-13 80.9 148 33.1
Nn1g09453 Nelumbo nucifera HOM05D004249 ORTHO05D005015 4.1e-13 79.3 44 68.2
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 6.0e-12 75.5 163 32.5
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 2.3e-11 73.6 148 31.8
Cfa025661 Carpinus fangiana HOM05D004249 ORTHO05D005015 3.1e-08 63.2 130 33.1
BraA03t09486Z Brassica rapa HOM05D004249 ORTHO05D005015 4.4e-07 59.3 44 52.3


User provided reference genes

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