Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 4.4e-132 474.6 228 100.0
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 1.5e-127 459.5 228 96.1
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 3.3e-119 431.8 228 89.0
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 4.3e-119 431.4 229 91.3
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 4.2e-114 414.8 228 87.3
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 5.4e-114 414.5 228 87.7
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 1.2e-113 413.3 228 86.8
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 1.2e-113 413.3 228 86.8
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 3.5e-113 411.8 228 86.8
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 3.5e-113 411.8 228 84.2
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 3.9e-112 408.3 228 85.1
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 6.6e-112 407.5 228 83.3
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 1.6e-110 402.9 228 83.8
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 6.2e-110 401.0 228 83.3
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 2.4e-109 399.1 229 82.5
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 3.1e-109 398.7 229 82.1
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 1.9e-106 389.4 215 86.5
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 2.7e-105 385.6 229 79.5
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 6.6e-104 380.9 218 83.0
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 2.5e-103 379.0 215 83.3
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 4.3e-103 378.3 218 82.1
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 4.3e-103 378.3 215 81.4
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 1.6e-102 376.3 287 65.9
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 9.0e-101 370.5 237 75.9
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 4.5e-100 368.2 228 75.4
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 4.9e-99 364.8 224 76.8
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 3.0e-88 328.9 213 75.1
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 1.3e-80 303.5 180 82.2
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 4.1e-77 292.0 210 64.8
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 2.6e-76 289.3 223 61.9
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 2.6e-76 289.3 192 68.2
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 3.4e-76 288.9 208 63.0
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 4.5e-76 288.5 220 60.9
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 4.5e-76 288.5 191 66.5
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 4.5e-76 288.5 216 60.6
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 5.9e-76 288.1 208 63.0
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.0e-75 287.3 204 63.2
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 2.2e-75 286.2 227 59.0
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 3.8e-75 285.4 226 59.3
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 5.0e-75 285.0 226 59.3
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 8.5e-75 284.3 208 61.1
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 8.5e-75 284.3 192 66.7
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 8.5e-75 284.3 211 61.6
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 1.9e-74 283.1 190 69.5
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 1.9e-74 283.1 196 65.8
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 2.5e-74 282.7 227 58.1
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 2.5e-74 282.7 194 67.5
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 9.4e-74 280.8 192 65.6
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 3.6e-73 278.9 192 64.6
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 4.6e-73 278.5 235 55.3
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 4.6e-73 278.5 210 59.5
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 4.6e-73 278.5 192 66.7
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 6.1e-73 278.1 224 58.5
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 7.9e-73 277.7 192 65.1
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 1.8e-72 276.6 192 64.6
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 2.3e-72 276.2 204 61.3
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 3.0e-72 275.8 191 63.9
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 3.9e-72 275.4 192 64.6
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 5.1e-72 275.0 192 64.6
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 6.7e-72 274.6 192 64.6
BolC4t22114H Brassica oleracea HOM05D004249 ORTHO05D005015 8.8e-72 274.2 164 82.3
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 1.1e-71 273.9 193 66.8
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 1.1e-71 273.9 192 64.1
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 1.1e-71 273.9 192 64.1
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 1.5e-71 273.5 191 63.4
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 2.0e-71 273.1 209 60.3
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 2.0e-71 273.1 199 61.3
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 2.5e-71 272.7 190 64.7
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 4.3e-71 271.9 201 61.7
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 4.3e-71 271.9 226 56.2
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 4.3e-71 271.9 193 64.2
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 5.7e-71 271.6 201 61.2
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 5.7e-71 271.6 221 55.2
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 7.4e-71 271.2 227 55.9
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 9.7e-71 270.8 191 63.9
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 9.7e-71 270.8 211 59.7
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 1.3e-70 270.4 207 59.4
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 2.2e-70 269.6 198 60.6
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.2e-70 269.6 209 56.9
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 3.7e-70 268.9 191 63.9
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 4.8e-70 268.5 200 63.0
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 8.2e-70 267.7 195 63.1
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.1e-69 267.3 192 60.9
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 1.4e-69 266.9 209 57.4
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 1.4e-69 266.9 197 62.4
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 1.4e-69 266.9 201 61.2
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 2.4e-69 266.2 191 62.8
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 3.1e-69 265.8 209 56.0
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 3.1e-69 265.8 209 56.0
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 3.1e-69 265.8 190 62.6
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 5.3e-69 265.0 191 62.8
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 5.3e-69 265.0 200 63.5
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 6.9e-69 264.6 209 56.9
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 9.1e-69 264.2 209 56.9
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 9.1e-69 264.2 214 55.6
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.2e-68 263.8 215 55.3
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 1.5e-68 263.5 193 61.7
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 1.5e-68 263.5 192 62.0
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 1.5e-68 263.5 183 65.6
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 2.0e-68 263.1 221 56.1
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 4.5e-68 261.9 181 63.5
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 1.7e-67 260.0 171 70.8
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 2.2e-67 259.6 188 63.3
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 1.4e-66 256.9 181 63.5
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 3.2e-66 255.8 182 63.2
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 4.2e-66 255.4 217 55.3
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 2.7e-65 252.7 193 59.1
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 2.7e-65 252.7 193 59.1
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 2.7e-65 252.7 193 59.1
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 2.7e-65 252.7 180 62.2
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 6.1e-65 251.5 188 59.0
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 2.3e-64 249.6 193 59.1
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 2.3e-64 249.6 193 59.1
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 2.3e-64 249.6 217 54.8
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 3.9e-64 248.8 214 55.1
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 1.1e-63 247.3 225 52.9
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 1.1e-63 247.3 227 54.2
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 7.4e-63 244.6 184 62.0
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 9.7e-63 244.2 191 56.0
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 3.1e-61 239.2 182 58.2
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 5.3e-61 238.4 190 55.8
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 9.1e-61 237.7 222 52.3
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 4.5e-60 235.3 177 61.0
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 4.5e-60 235.3 191 58.1
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 5.5e-58 228.4 178 59.6
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 7.2e-58 228.0 193 53.9
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 1.0e-56 224.2 178 59.0
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 3.0e-56 222.6 192 52.6
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 6.7e-56 221.5 203 51.2
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 1.1e-53 214.2 197 53.8
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 2.6e-52 209.5 228 48.2
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 5.9e-52 208.4 145 65.5
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 8.5e-51 204.5 145 65.5
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 2.5e-50 203.0 175 53.7
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 3.6e-49 199.1 150 64.7
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 8.0e-49 198.0 154 63.6
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 8.3e-46 188.0 184 47.3
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 6.5e-43 178.3 226 42.9
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 2.2e-38 163.3 113 64.6
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 9.1e-37 157.9 117 61.5
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 9.5e-34 147.9 206 39.8
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 9.8e-31 137.9 204 40.7
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 2.7e-28 129.8 181 38.7
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 1.0e-27 127.9 180 39.4
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 1.1e-26 124.4 180 38.9
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 1.1e-26 124.4 180 38.9
AUR62023720 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.9e-26 123.6 96 60.4
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 3.3e-26 122.9 81 65.4
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 3.6e-25 119.4 190 37.4
THA.LOC104824119 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 6.1e-25 118.6 73 69.9
HPP92_011580 Vanilla planifolia HOM05D004249 ORTHO05D005015 2.9e-22 109.8 69 69.6
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 3.2e-21 106.3 102 50.0
MELO3C033208.2 Cucumis melo HOM05D004249 ORTHO05D005015 4.1e-21 105.9 77 62.3
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 6.0e-20 102.1 79 59.5
Cre04.g215600 Chlamydomonas reinhardtii HOM05D004249 ORTHO05D005015 1.7e-19 100.5 206 33.5
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 5.0e-19 99.0 76 55.3
MBI10_g23575_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 2.5e-18 96.7 62 62.9
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 5.6e-18 95.5 69 59.4
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 6.2e-17 92.0 76 52.6
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 7.5e-15 85.1 148 36.5
HPP92_011581 Vanilla planifolia HOM05D004249 ORTHO05D005015 6.4e-14 82.0 54 63.0
Nn1g09453 Nelumbo nucifera HOM05D004249 ORTHO05D005015 9.2e-13 78.2 44 68.2
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 9.2e-13 78.2 163 33.7
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 2.1e-12 77.0 148 31.8
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 2.1e-12 77.0 148 31.8
BraA03t09486Z Brassica rapa HOM05D004249 ORTHO05D005015 1.5e-07 60.8 44 56.8
Cfa025661 Carpinus fangiana HOM05D004249 ORTHO05D005015 2.0e-07 60.5 130 32.3


User provided reference genes

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