Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G43795 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 4.5e-40 168.3 87 100.0
AL4G42670 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 2.6e-35 152.5 86 91.9
AL5G41850 Arabidopsis lyrata HOM05D004131 ORTHO05D004778 5.4e-33 144.8 82 87.8
Thhalv10006256m.g Eutrema salsugineum HOM05D004131 ORTHO05D004778 7.0e-33 144.4 82 87.8
AT3G59800 Arabidopsis thaliana HOM05D004131 ORTHO05D004778 1.6e-32 143.3 80 90.0
BcaB02g08209 Brassica carinata HOM05D004131 ORTHO05D004778 1.6e-32 143.3 84 84.5
A04p02020 Brassica napus HOM05D004131 ORTHO05D004778 2.0e-32 142.9 85 83.5
BcaC02g10087 Brassica carinata HOM05D004131 ORTHO05D004778 3.5e-32 142.1 85 82.4
C04p32910 Brassica napus HOM05D004131 ORTHO05D004778 3.5e-32 142.1 85 82.4
Sp5g03340 Schrenkiella parvula HOM05D004131 ORTHO05D004778 4.6e-32 141.7 81 86.4
BolC4t22105H Brassica oleracea HOM05D004131 ORTHO05D004778 7.8e-32 141.0 86 82.6
Carub.0004s2633 Capsella rubella HOM05D004131 ORTHO05D004778 1.3e-31 140.2 80 88.8
Aa31LG10G14050 Aethionema arabicum HOM05D004131 ORTHO05D004778 3.0e-31 139.0 79 87.3
Sp4g25870 Schrenkiella parvula HOM05D004131 ORTHO05D004778 3.0e-31 139.0 78 89.7
BraA04t15927Z Brassica rapa HOM05D004131 ORTHO05D004778 3.9e-31 138.7 80 86.2
CARHR138980 Cardamine hirsuta HOM05D004131 ORTHO05D004778 4.3e-30 135.2 78 88.5
BcaB02g08900 Brassica carinata HOM05D004131 ORTHO05D004778 5.6e-30 134.8 78 85.9
BcaC02g12362 Brassica carinata HOM05D004131 ORTHO05D004778 5.6e-30 134.8 78 85.9
C04p04750 Brassica napus HOM05D004131 ORTHO05D004778 5.6e-30 134.8 78 85.9
BolC4t24854H Brassica oleracea HOM05D004131 ORTHO05D004778 5.6e-30 134.8 79 84.8
A05p04000 Brassica napus HOM05D004131 ORTHO05D004778 1.4e-28 130.2 79 84.8
BraA05t19388Z Brassica rapa HOM05D004131 ORTHO05D004778 1.4e-28 130.2 79 84.8
ECA130G0002 Erigeron canadensis HOM05D004131 ORTHO05D004778 1.8e-28 129.8 88 75.0
Ca_18622_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 4.0e-28 128.6 85 75.3
Ca_18628_v3 Cicer arietinum L. HOM05D004131 ORTHO05D004778 4.0e-28 128.6 85 75.3
Atru.chr4.1513 Acer truncatum HOM05D004131 ORTHO05D004778 5.2e-28 128.3 88 73.9
TWI63G0908 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 5.2e-28 128.3 88 73.9
THA.LOC104805841 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 6.8e-28 127.9 78 79.5
VMungo0251G3663 Vigna mungo HOM05D004131 ORTHO05D004778 8.9e-28 127.5 86 75.6
Ciclev10022332m.g Citrus clementina HOM05D004131 ORTHO05D004778 1.5e-27 126.7 88 72.7
Medtr4g087630 Medicago truncatula HOM05D004131 ORTHO05D004778 1.5e-27 126.7 78 80.8
Psat7g119160 Pisum sativum HOM05D004131 ORTHO05D004778 1.5e-27 126.7 78 80.8
THA.LOC104804159 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.5e-27 126.7 77 79.2
TPR.G23549 Trifolium pratense HOM05D004131 ORTHO05D004778 1.5e-27 126.7 78 80.8
CARHR170140 Cardamine hirsuta HOM05D004131 ORTHO05D004778 2.0e-27 126.3 72 90.3
Actinidia18408 Actinidia chinensis HOM05D004131 ORTHO05D004778 3.4e-27 125.6 83 77.1
Lj6C265T11 Lonicera japonica HOM05D004131 ORTHO05D004778 3.4e-27 125.6 87 73.6
Duzib268G1863 Durio zibethinus HOM05D004131 ORTHO05D004778 4.4e-27 125.2 87 73.6
Lj4g0014155 Lotus japonicus HOM05D004131 ORTHO05D004778 4.4e-27 125.2 86 73.3
PSO675G2278 Papaver somniferum HOM05D004131 ORTHO05D004778 4.4e-27 125.2 84 77.4
Phvul.003G059400 Phaseolus vulgaris HOM05D004131 ORTHO05D004778 4.4e-27 125.2 78 79.5
MBI07_g36705_MAGBIO Magnolia biondii HOM05D004131 ORTHO05D004778 5.8e-27 124.8 74 83.8
GSVIVG01038193001 Vitis vinifera HOM05D004131 ORTHO05D004778 5.8e-27 124.8 85 75.3
COL.COLO4_04655 Corchorus olitorius HOM05D004131 ORTHO05D004778 9.8e-27 124.0 86 73.3
ECA233G3286 Erigeron canadensis HOM05D004131 ORTHO05D004778 9.8e-27 124.0 75 81.3
FAN26G1335 Fragaria x ananassa HOM05D004131 ORTHO05D004778 9.8e-27 124.0 82 76.8
Prupe.7G267400 Prunus persica HOM05D004131 ORTHO05D004778 9.8e-27 124.0 83 74.7
Glyma.07G206100 Glycine max HOM05D004131 ORTHO05D004778 1.3e-26 123.6 78 78.2
MD02G1003900 Malus domestica HOM05D004131 ORTHO05D004778 1.3e-26 123.6 83 75.9
Nn7g37517 Nelumbo nucifera HOM05D004131 ORTHO05D004778 1.3e-26 123.6 86 73.3
TWI38G2196 Tripterygium wilfordii HOM05D004131 ORTHO05D004778 1.3e-26 123.6 77 77.9
Glyma.02G138900 Glycine max HOM05D004131 ORTHO05D004778 1.7e-26 123.2 86 72.1
MD15G1147200 Malus domestica HOM05D004131 ORTHO05D004778 1.7e-26 123.2 77 77.9
THA.LOC104802336 Tarenaya hassleriana HOM05D004131 ORTHO05D004778 1.7e-26 123.2 75 78.7
MELO3C022231.2 Cucumis melo HOM05D004131 ORTHO05D004778 2.2e-26 122.9 88 72.7
PGSC0003DMG400005367 Solanum tuberosum HOM05D004131 ORTHO05D004778 2.2e-26 122.9 74 81.1
Dinv33225 Davidia involucrata HOM05D004131 ORTHO05D004778 2.9e-26 122.5 88 70.5
FvH4_1g00470 Fragaria vesca HOM05D004131 ORTHO05D004778 2.9e-26 122.5 83 74.7
FAN28G1052 Fragaria x ananassa HOM05D004131 ORTHO05D004778 2.9e-26 122.5 83 74.7
Gohir.A10G146200 Gossypium hirsutum HOM05D004131 ORTHO05D004778 2.9e-26 122.5 84 75.0
Gorai.011G132700 Gossypium raimondii HOM05D004131 ORTHO05D004778 2.9e-26 122.5 84 75.0
Nitab4.5_0000064g0030 Nicotiana tabacum HOM05D004131 ORTHO05D004778 2.9e-26 122.5 74 79.7
Nitab4.5_0005089g0010 Nicotiana tabacum HOM05D004131 ORTHO05D004778 2.9e-26 122.5 74 79.7
PSO017G4173 Papaver somniferum HOM05D004131 ORTHO05D004778 2.9e-26 122.5 77 79.2
RcHm_v2.0_Chr2g0084981 Rosa chinensis HOM05D004131 ORTHO05D004778 2.9e-26 122.5 81 76.5
Sed0002263 Sechium edule HOM05D004131 ORTHO05D004778 2.9e-26 122.5 81 75.3
CsaV3_5G040580 Cucumis sativus L. HOM05D004131 ORTHO05D004778 3.7e-26 122.1 88 72.7
Migut.G00833 Erythranthe guttata HOM05D004131 ORTHO05D004778 3.7e-26 122.1 87 70.1
FAN23G0024 Fragaria x ananassa HOM05D004131 ORTHO05D004778 3.7e-26 122.1 81 76.5
Manes.01G017500 Manihot esculenta HOM05D004131 ORTHO05D004778 4.9e-26 121.7 79 74.7
Peaxi162Scf00483g00111 Petunia axillaris HOM05D004131 ORTHO05D004778 4.9e-26 121.7 74 79.7
Solyc12g019470.2 Solanum lycopersicum HOM05D004131 ORTHO05D004778 4.9e-26 121.7 82 76.8
Sopen12g009750 Solanum pennellii HOM05D004131 ORTHO05D004778 4.9e-26 121.7 82 76.8
CAN.G448.4 Capsicum annuum HOM05D004131 ORTHO05D004778 6.4e-26 121.3 74 79.7
Gohir.D10G120800 Gossypium hirsutum HOM05D004131 ORTHO05D004778 6.4e-26 121.3 84 73.8
Sabra17G0009400 Salix brachista HOM05D004131 ORTHO05D004778 6.4e-26 121.3 88 69.3
TAR636G2398 Trochodendron aralioides HOM05D004131 ORTHO05D004778 6.4e-26 121.3 87 71.3
Aqoxy2G04165 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 8.3e-26 120.9 84 73.8
CANSAT56G2001 Cannabis sativa HOM05D004131 ORTHO05D004778 8.3e-26 120.9 73 79.5
Migut.N03052 Erythranthe guttata HOM05D004131 ORTHO05D004778 8.3e-26 120.9 87 71.3
HanXRQChr02g0059071 Helianthus annuus HOM05D004131 ORTHO05D004778 8.3e-26 120.9 73 80.8
CSS0000211 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.1e-25 120.6 74 77.0
CSS0004184 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.1e-25 120.6 83 72.3
CSS0028329 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.1e-25 120.6 83 72.3
CSS0046112 Camellia sinensis var. sinensis HOM05D004131 ORTHO05D004778 1.1e-25 120.6 74 77.0
Duzib212G0438 Durio zibethinus HOM05D004131 ORTHO05D004778 1.1e-25 120.6 83 74.7
Lju470A13T20 Lonicera japonica HOM05D004131 ORTHO05D004778 1.1e-25 120.6 83 74.7
Actinidia28972 Actinidia chinensis HOM05D004131 ORTHO05D004778 1.4e-25 120.2 74 77.0
Dinv18309 Davidia involucrata HOM05D004131 ORTHO05D004778 1.4e-25 120.2 85 70.6
Lju470A13G17 Lonicera japonica HOM05D004131 ORTHO05D004778 1.4e-25 120.2 82 75.6
CDE08G0022 Ceratophyllum demersum HOM05D004131 ORTHO05D004778 1.9e-25 119.8 85 69.4
Lsat_1_v5_gn_7_67880 Lactuca sativa HOM05D004131 ORTHO05D004778 1.9e-25 119.8 82 73.2
Lalb_Chr16g0384341 Lupinus albus HOM05D004131 ORTHO05D004778 1.9e-25 119.8 86 68.6
Sabra07G0117600 Salix brachista HOM05D004131 ORTHO05D004778 1.9e-25 119.8 84 72.6
Potri.007G139900 Populus trichocarpa HOM05D004131 ORTHO05D004778 2.4e-25 119.4 83 73.5
MSTRG.24561 Avicennia marina HOM05D004131 ORTHO05D004778 3.2e-25 119.0 84 71.4
HPP92_023727 Vanilla planifolia HOM05D004131 ORTHO05D004778 3.2e-25 119.0 85 69.4
TAR362G1052 Trochodendron aralioides HOM05D004131 ORTHO05D004778 4.1e-25 118.6 76 76.3
Zm00001eb425720 Zea mays HOM05D004131 ORTHO05D004778 4.1e-25 118.6 72 81.9
Cfa021469 Carpinus fangiana HOM05D004131 ORTHO05D004778 5.4e-25 118.2 77 75.3
Cc03_g14990 Coffea canephora HOM05D004131 ORTHO05D004778 5.4e-25 118.2 85 70.6
Potri.017G010100 Populus trichocarpa HOM05D004131 ORTHO05D004778 5.4e-25 118.2 88 68.2
Ah.07g202990 Amaranthus hybridus HOM05D004131 ORTHO05D004778 7.0e-25 117.9 83 73.5
ATR0743G176 Amborella trichopoda HOM05D004131 ORTHO05D004778 7.0e-25 117.9 73 78.1
PGR042G3815 Punica granatum HOM05D004131 ORTHO05D004778 9.2e-25 117.5 78 73.1
SalBow3G2571 Salvia bowleyana HOM05D004131 ORTHO05D004778 9.2e-25 117.5 74 75.7
Haze_11173 Corylus avellana HOM05D004131 ORTHO05D004778 1.2e-24 117.1 77 74.0
Haze_11178 Corylus avellana HOM05D004131 ORTHO05D004778 1.2e-24 117.1 77 74.0
Sabra07G0113200 Salix brachista HOM05D004131 ORTHO05D004778 1.2e-24 117.1 77 74.0
CiPaw.01G198800 Carya illinoinensis HOM05D004131 ORTHO05D004778 1.6e-24 116.7 74 75.7
SalBow6G7192 Salvia bowleyana HOM05D004131 ORTHO05D004778 1.6e-24 116.7 83 73.5
unitig_8.g3637 Utricularia gibba HOM05D004131 ORTHO05D004778 1.6e-24 116.7 82 70.7
Lalb_Chr05g0218801 Lupinus albus HOM05D004131 ORTHO05D004778 2.0e-24 116.3 85 67.1
BcaC07g40454 Brassica carinata HOM05D004131 ORTHO05D004778 2.7e-24 115.9 80 77.5
Eucgr.G01598 Eucalyptus grandis HOM05D004131 ORTHO05D004778 7.8e-24 114.4 72 77.8
Eucgr.L00027 Eucalyptus grandis HOM05D004131 ORTHO05D004778 7.8e-24 114.4 72 77.8
Sc13g0007290 Simmondsia chinensis HOM05D004131 ORTHO05D004778 1.0e-23 114.0 72 76.4
CiPaw.02G123300 Carya illinoinensis HOM05D004131 ORTHO05D004778 1.7e-23 113.2 73 75.3
Hund12374 Selenicereus undatus HOM05D004131 ORTHO05D004778 2.3e-23 112.8 74 73.0
AUR62002422 Chenopodium quinoa HOM05D004131 ORTHO05D004778 3.9e-23 112.1 87 63.2
Ah.13g073340 Amaranthus hybridus HOM05D004131 ORTHO05D004778 6.6e-23 111.3 83 69.9
AUR62023766 Chenopodium quinoa HOM05D004131 ORTHO05D004778 6.6e-23 111.3 86 66.3
Pp3c3_18840 Physcomitrium patens HOM05D004131 ORTHO05D004778 1.5e-22 110.2 74 73.0
AagrBONN_evm.TU.Sc2ySwM_344.2765 Anthoceros agrestis HOM05D004131 ORTHO05D004778 1.9e-22 109.8 82 70.7
EL10Ac3g06119 Beta vulgaris HOM05D004131 ORTHO05D004778 1.9e-22 109.8 74 73.0
SMO364G0381 Selaginella moellendorffii HOM05D004131 ORTHO05D004778 7.3e-22 107.8 72 73.6
SEGI_19170 Sequoiadendron giganteum HOM05D004131 ORTHO05D004778 7.3e-22 107.8 88 63.6
arahy.Tifrunner.gnm1.ann1.GY80IK Arachis hypogaea HOM05D004131 ORTHO05D004778 2.1e-21 106.3 111 53.2
Mapoly0055s0100 Marchantia polymorpha HOM05D004131 ORTHO05D004778 2.1e-21 106.3 83 67.5
BcaB02g08224 Brassica carinata HOM05D004131 ORTHO05D004778 1.3e-18 97.1 63 79.4
BcaC07g40508 Brassica carinata HOM05D004131 ORTHO05D004778 1.7e-18 96.7 79 65.8
C08p34760 Brassica napus HOM05D004131 ORTHO05D004778 1.7e-18 96.7 79 65.8
BolC8t51078H Brassica oleracea HOM05D004131 ORTHO05D004778 1.7e-18 96.7 79 65.8
vmacro15701 Vaccinium macrocarpon HOM05D004131 ORTHO05D004778 2.9e-18 95.9 135 44.4
CBR_g6538 Chara braunii HOM05D004131 ORTHO05D004778 8.3e-18 94.4 79 59.5
Lj6C255T9 Lonicera japonica HOM05D004131 ORTHO05D004778 7.8e-16 87.8 80 61.2
Rhsim02G0086100 Rhododendron simsii HOM05D004131 ORTHO05D004778 3.9e-15 85.5 162 37.0
Aqoxy604s001 Aquilegia oxysepala HOM05D004131 ORTHO05D004778 1.2e-13 80.5 56 71.4
BcaC07g40452 Brassica carinata HOM05D004131 ORTHO05D004778 2.3e-12 76.3 48 85.4
Actinidia11437 Actinidia chinensis HOM05D004131 ORTHO05D004778 3.4e-11 72.4 42 76.2
RhsimUnG0015600 Rhododendron simsii HOM05D004131 ORTHO05D004778 3.4e-11 72.4 196 30.6
QL10p058548 Quercus lobata HOM05D004131 ORTHO05D004778 2.2e-10 69.7 34 88.2
QL10p059325 Quercus lobata HOM05D004131 ORTHO05D004778 2.2e-10 69.7 34 88.2
Carub.0005s2652 Capsella rubella HOM05D004131 ORTHO05D004778 4.9e-10 68.6 41 87.8
Cre16.g660850 Chlamydomonas reinhardtii HOM05D004131 ORTHO05D004778 8.4e-10 67.8 84 45.2
Sed0017538 Sechium edule HOM05D004131 ORTHO05D004778 8.4e-10 67.8 34 85.3
QL10p058544 Quercus lobata HOM05D004131 ORTHO05D004778 5.4e-09 65.1 54 64.8
Thecc.04G162100 Theobroma cacao HOM05D004131 ORTHO05D004778 1.2e-08 63.9 53 67.9
Oeu050314.3 Olea europaea HOM05D004131 ORTHO05D004778 6.0e-08 61.6 59 59.3
BcaB05g25107 Brassica carinata HOM05D004131 ORTHO05D004778 1.3e-07 60.5 52 67.3
BcaB05g25109 Brassica carinata HOM05D004131 ORTHO05D004778 1.3e-07 60.5 52 67.3
QL10p059329 Quercus lobata HOM05D004131 ORTHO05D004778 2.3e-07 59.7 43 72.1
BcaB02g07200 Brassica carinata HOM05D004131 ORTHO05D004778 3.0e-07 59.3 50 68.0
BcaB05g25110 Brassica carinata HOM05D004131 ORTHO05D004778 3.9e-07 58.9 52 65.4
BcaB05g25112 Brassica carinata HOM05D004131 ORTHO05D004778 3.9e-07 58.9 52 65.4
BcaB02g07199 Brassica carinata HOM05D004131 ORTHO05D004778 5.1e-07 58.5 38 78.9
BcaB05g25118 Brassica carinata HOM05D004131 ORTHO05D004778 8.6e-07 57.8 48 68.8
BcaNung06582 Brassica carinata HOM05D004131 ORTHO05D004778 1.1e-06 57.4 41 75.6
BraA09t40640Z Brassica rapa HOM05D004131 ORTHO05D004778 1.1e-06 57.4 44 68.2
ClCG08G000030 Citrullus lanatus HOM05D004131 ORTHO05D004778 2.5e-06 56.2 62 58.1
MSTRG.9725 Avicennia marina HOM05D005043 ORTHO05D000110 4.3e-06 55.5 92 40.2
BcaB05g25117 Brassica carinata HOM05D004131 ORTHO05D004778 4.3e-06 55.5 47 66.0
Lju470A13T22 Lonicera japonica HOM05D004131 ORTHO05D004778 5.6e-06 55.1 51 62.7


User provided reference genes

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