Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G43780 Arabidopsis thaliana HOM05D007605 ORTHO05D009572 2.9e-31 137.9 68 100.0
AL4G42650 Arabidopsis lyrata HOM05D007605 ORTHO05D009572 1.2e-29 132.5 68 95.6
Carub.0004s2631 Capsella rubella HOM05D007605 ORTHO05D009572 2.3e-28 128.3 68 92.6
CARHR138960 Cardamine hirsuta HOM05D007605 ORTHO05D009572 1.1e-27 125.9 68 91.2
Sp4g25850 Schrenkiella parvula HOM05D007605 ORTHO05D009572 1.1e-25 119.4 68 85.3
A03p24460 Brassica napus HOM05D007605 ORTHO05D009572 3.1e-25 117.9 68 83.8
BraA03t11655Z Brassica rapa HOM05D007605 ORTHO05D009572 9.1e-25 116.3 68 82.4
BcaC01g05214 Brassica carinata HOM05D007605 ORTHO05D009572 1.6e-24 115.5 68 82.4
C03p29150 Brassica napus HOM05D007605 ORTHO05D009572 1.6e-24 115.5 68 82.4
BolC3t15267H Brassica oleracea HOM05D007605 ORTHO05D009572 1.6e-24 115.5 68 82.4
BcaB01g03362 Brassica carinata HOM05D007605 ORTHO05D009572 3.5e-24 114.4 68 80.9
BcaB02g08902 Brassica carinata HOM05D005323 ORTHO05D006820 1.0e-23 112.8 63 84.1
BcaB05g23281 Brassica carinata HOM05D007605 ORTHO05D009572 1.3e-23 112.5 69 81.2
Thhalv10001711m.g Eutrema salsugineum HOM05D007605 ORTHO05D009572 1.7e-23 112.1 68 82.4
Aa31LG1G25490 Aethionema arabicum HOM05D005323 ORTHO05D006820 2.2e-23 111.7 62 87.1
BraA05t19386Z Brassica rapa HOM05D005323 ORTHO05D006820 1.9e-22 108.6 62 82.3
BcaC02g12364 Brassica carinata HOM05D005323 ORTHO05D006820 2.5e-22 108.2 62 82.3
C04p04730 Brassica napus HOM05D005323 ORTHO05D006820 2.5e-22 108.2 62 82.3
BolC4t22103H Brassica oleracea HOM05D005323 ORTHO05D006820 2.5e-22 108.2 62 82.3
A05p03980 Brassica napus HOM05D005323 ORTHO05D006820 1.2e-21 105.9 62 80.6
THA.LOC104802329 Tarenaya hassleriana HOM05D007605 ORTHO05D009572 3.6e-21 104.4 68 77.9
Cpa.g.sc9.378 Carica papaya HOM05D007605 ORTHO05D009572 1.0e-20 102.8 68 76.5
FAN05G3507 Fragaria x ananassa HOM05D007605 ORTHO05D009572 1.0e-20 102.8 69 76.8
FAN05G0946 Fragaria x ananassa HOM05D007605 ORTHO05D009572 3.0e-20 101.3 68 75.0
FAN14G0446 Fragaria x ananassa HOM05D007605 ORTHO05D009572 3.0e-20 101.3 69 75.4
FvH4_6g21131 Fragaria vesca HOM05D007605 ORTHO05D009572 1.2e-19 99.4 67 74.6
RcHm_v2.0_Chr4g0405791 Rosa chinensis HOM05D007605 ORTHO05D009572 2.0e-19 98.6 69 75.4
Haze_00851 Corylus avellana HOM05D007605 ORTHO05D009572 2.6e-19 98.2 69 73.9
CANSAT01G0287 Cannabis sativa HOM05D007605 ORTHO05D009572 3.4e-19 97.8 69 73.9
Cfa015674 Carpinus fangiana HOM05D007605 ORTHO05D009572 7.5e-19 96.7 69 72.5
Atru.chr4.1455 Acer truncatum HOM05D007605 ORTHO05D009572 1.3e-18 95.9 55 85.5
Lj1g0002800 Lotus japonicus HOM05D007605 ORTHO05D009572 1.3e-18 95.9 69 75.4
RcHm_v2.0_Chr7g0232231 Rosa chinensis HOM05D007605 ORTHO05D009572 2.2e-18 95.1 69 72.5
MELO3C011854.2 Cucumis melo HOM05D007605 ORTHO05D009572 3.7e-18 94.4 55 85.5
Lj6g0016727 Lotus japonicus HOM05D007605 ORTHO05D009572 3.7e-18 94.4 69 73.9
Duzib212G0337 Durio zibethinus HOM05D007605 ORTHO05D009572 4.8e-18 94.0 68 72.1
Glyma.08G364500 Glycine max HOM05D007605 ORTHO05D009572 4.8e-18 94.0 69 72.5
Lj1g0021920 Lotus japonicus HOM05D007605 ORTHO05D009572 4.8e-18 94.0 69 73.9
Lj6g0006319 Lotus japonicus HOM05D007605 ORTHO05D009572 4.8e-18 94.0 69 73.9
arahy.Tifrunner.gnm1.ann1.FBG7WK Arachis hypogaea HOM05D007605 ORTHO05D009572 6.3e-18 93.6 70 72.9
Glyma.18G297600 Glycine max HOM05D007605 ORTHO05D009572 6.3e-18 93.6 69 72.5
DCAR_030842 Daucus carota HOM05D007605 ORTHO05D009572 8.3e-18 93.2 64 75.0
Thecc.04G164300 Theobroma cacao HOM05D007605 ORTHO05D009572 8.3e-18 93.2 68 70.6
CSS0027032 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 1.4e-17 92.4 55 85.5
CSS0028313 Camellia sinensis var. sinensis HOM05D007605 ORTHO05D009572 1.4e-17 92.4 55 85.5
Ca_14651_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 1.4e-17 92.4 69 69.6
PGSC0003DMG400016297 Solanum tuberosum HOM05D007605 ORTHO05D009572 1.4e-17 92.4 56 78.6
COL.COLO4_38114 Corchorus olitorius HOM05D007605 ORTHO05D009572 1.8e-17 92.0 56 80.4
arahy.Tifrunner.gnm1.ann1.MPL0H7 Arachis hypogaea HOM05D007605 ORTHO05D009572 2.4e-17 91.7 68 72.1
MD03G1210800 Malus domestica HOM05D007605 ORTHO05D009572 2.4e-17 91.7 69 69.6
MD11G1225700 Malus domestica HOM05D007605 ORTHO05D009572 2.4e-17 91.7 69 71.0
Manes.05G136900 Manihot esculenta HOM05D007605 ORTHO05D009572 2.4e-17 91.7 55 81.8
Manes.08G010900 Manihot esculenta HOM05D007605 ORTHO05D009572 2.4e-17 91.7 55 81.8
Ca_08431_v3 Cicer arietinum L. HOM05D007605 ORTHO05D009572 3.1e-17 91.3 69 68.1
Medtr7g091060 Medicago truncatula HOM05D007605 ORTHO05D009572 3.1e-17 91.3 69 68.1
PGR142G0642 Punica granatum HOM05D007605 ORTHO05D009572 3.1e-17 91.3 64 71.9
Sc13g0006890 Simmondsia chinensis HOM05D007605 ORTHO05D009572 3.1e-17 91.3 56 83.9
VMungo1383G0010 Vigna mungo HOM05D003647 ORTHO05D004182 3.1e-17 91.3 67 70.1
CiPaw.01G168900 Carya illinoinensis HOM05D007605 ORTHO05D009572 4.1e-17 90.9 50 88.0
Potri.019G096700 Populus trichocarpa HOM05D007605 ORTHO05D009572 4.1e-17 90.9 64 73.4
SGA_v2.0_scaffold25G11005 Striga asiatica HOM05D000384 ORTHO05D009572 4.1e-17 90.9 55 80.0
Ah.07g202920 Amaranthus hybridus HOM05D007605 ORTHO05D009572 7.0e-17 90.1 55 80.0
Ciclev10023247m.g Citrus clementina HOM05D007605 ORTHO05D009572 7.0e-17 90.1 55 80.0
Nitab4.5_0004700g0030 Nicotiana tabacum HOM05D001130 ORTHO05D001052 7.0e-17 90.1 55 78.2
Nitab4.5_0007474g0060 Nicotiana tabacum HOM05D007605 ORTHO05D009572 7.0e-17 90.1 55 78.2
Potri.019G096500 Populus trichocarpa HOM05D007605 ORTHO05D009572 7.0e-17 90.1 62 74.2
SalBow6G4154 Salvia bowleyana HOM05D007605 ORTHO05D009572 7.0e-17 90.1 55 80.0
Sopen06g018580 Solanum pennellii HOM05D007605 ORTHO05D009572 7.0e-17 90.1 56 76.8
Migut.N03059 Erythranthe guttata HOM05D007605 ORTHO05D009572 9.1e-17 89.7 55 80.0
Peaxi162Scf00579g00018 Petunia axillaris HOM05D007605 ORTHO05D009572 9.1e-17 89.7 56 76.8
Atru.chr12.2308 Acer truncatum HOM05D007605 ORTHO05D009572 1.2e-16 89.4 55 81.8
Prupe.4G204500 Prunus persica HOM05D007605 ORTHO05D009572 1.2e-16 89.4 69 65.2
Nn1g09550 Nelumbo nucifera HOM05D007605 ORTHO05D009572 1.6e-16 89.0 55 78.2
Rhsim09G0008600 Rhododendron simsii HOM05D007605 ORTHO05D009572 1.6e-16 89.0 55 85.5
Sabra19G0108500 Salix brachista HOM05D000005 ORTHO05D000012 1.6e-16 89.0 64 71.9
Sed0018718 Sechium edule HOM05D007605 ORTHO05D009572 1.6e-16 89.0 55 81.8
TPR.G18242 Trifolium pratense HOM05D007605 ORTHO05D009572 2.0e-16 88.6 70 67.1
Phvul.008G005000 Phaseolus vulgaris HOM05D007605 ORTHO05D009572 2.7e-16 88.2 69 69.6
Psat3g074320 Pisum sativum HOM05D007605 ORTHO05D009572 2.7e-16 88.2 69 68.1
AUR62002411 Chenopodium quinoa HOM05D007605 ORTHO05D009572 5.9e-16 87.0 53 79.2
Gohir.A10G144600 Gossypium hirsutum HOM05D007605 ORTHO05D009572 7.7e-16 86.7 56 78.6
PSO573G0041 Papaver somniferum HOM05D007605 ORTHO05D009572 7.7e-16 86.7 55 80.0
Aqoxy4G02871 Aquilegia oxysepala HOM05D007605 ORTHO05D009572 1.0e-15 86.3 56 75.0
EL10Ac3g06103 Beta vulgaris HOM05D007605 ORTHO05D009572 1.0e-15 86.3 58 74.1
MBI07_g11492_MAGBIO Magnolia biondii HOM05D007605 ORTHO05D009572 1.0e-15 86.3 58 75.9
Os12g0611700 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 1.0e-15 86.3 53 79.2
Sabra13G0106700 Salix brachista HOM05D007605 ORTHO05D009572 1.0e-15 86.3 64 70.3
TWI63G1406 Tripterygium wilfordii HOM05D007605 ORTHO05D009572 1.0e-15 86.3 67 71.6
Glyma.19G073500 Glycine max HOM05D007605 ORTHO05D009572 1.7e-15 85.5 69 66.7
Lalb_Chr04g0257371 Lupinus albus HOM05D007605 ORTHO05D009572 1.7e-15 85.5 55 78.2
Eucgr.H04449 Eucalyptus grandis HOM05D007605 ORTHO05D009572 2.2e-15 85.1 55 78.2
Lsat_1_v5_gn_1_21060 Lactuca sativa HOM05D007605 ORTHO05D009572 3.8e-15 84.3 50 80.0
ATR0743G065 Amborella trichopoda HOM05D007605 ORTHO05D009572 5.0e-15 84.0 66 69.7
ECA248G2718 Erigeron canadensis HOM05D007605 ORTHO05D009572 5.0e-15 84.0 50 80.0
QL10p056550 Quercus lobata HOM05D007605 ORTHO05D009572 5.0e-15 84.0 62 74.2
Os05g0103800 Oryza sativa ssp. japonica HOM05D007605 ORTHO05D009572 1.1e-14 82.8 53 77.4
Gohir.D10G122400 Gossypium hirsutum HOM05D007605 ORTHO05D009572 1.9e-14 82.0 57 77.2
Gorai.011G134700 Gossypium raimondii HOM05D007605 ORTHO05D009572 1.9e-14 82.0 57 77.2
ClCG11G013540 Citrullus lanatus HOM05D007605 ORTHO05D009572 2.5e-14 81.6 46 87.0
GSVIVG01038176001 Vitis vinifera HOM05D007605 ORTHO05D009572 7.2e-14 80.1 55 72.7
Glyma.19G030600 Glycine max HOM05D007605 ORTHO05D009572 3.6e-13 77.8 69 65.2
CsaV3_5G030160 Cucumis sativus L. HOM05D007605 ORTHO05D009572 4.7e-13 77.4 42 88.1
BcaC05g29066 Brassica carinata HOM05D007605 ORTHO05D009572 6.1e-13 77.0 46 76.1
Lj6C218G0 Lonicera japonica HOM05D000384 ORTHO05D000468 3.4e-11 71.2 41 80.5
Lsat_1_v5_gn_1_74540 Lactuca sativa HOM05D007605 ORTHO05D009572 5.7e-11 70.5 47 70.2
vmacro23387 Vaccinium macrocarpon HOM05D007605 ORTHO05D009572 5.7e-11 70.5 35 97.1
Glyma.17G205632 Glycine max HOM05D007605 ORTHO05D009572 7.5e-11 70.1 58 62.1
Mapoly0044s0040 Marchantia polymorpha HOM05D007605 ORTHO05D009572 3.5e-08 61.2 43 69.8
Pp3c9_12740 Physcomitrium patens HOM05D007605 ORTHO05D009572 2.3e-07 58.5 51 58.8


User provided reference genes

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