Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G43720 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.7e-76 289.3 148 100.0
AL4G42550 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.7e-71 272.7 148 92.6
CARHR138910 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.5e-69 266.2 148 89.9
Sp4g25790 Schrenkiella parvula HOM05D003922 ORTHO05D004492 1.0e-68 263.5 148 91.2
Thhalv10001669m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 7.2e-67 257.3 147 89.8
Carub.0004s2626 Capsella rubella HOM05D003922 ORTHO05D004492 1.6e-66 256.1 148 87.8
BcaC02g07156 Brassica carinata HOM05D000941 ORTHO05D004492 1.1e-62 243.4 146 83.6
BcaB06g29344 Brassica carinata HOM05D003922 ORTHO05D004492 1.4e-62 243.0 149 84.6
A04p33020 Brassica napus HOM05D003922 ORTHO05D004492 3.1e-62 241.9 143 84.6
BraA04t18761Z Brassica rapa HOM05D003922 ORTHO05D004492 3.1e-62 241.9 143 84.6
C04p70710 Brassica napus HOM05D003922 ORTHO05D004492 4.1e-62 241.5 143 84.6
BolC4t28571H Brassica oleracea HOM05D003922 ORTHO05D004492 4.1e-62 241.5 146 82.9
THA.LOC104804105 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 5.0e-60 234.6 145 80.0
THA.LOC104815872 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 8.8e-49 197.2 147 66.7
Cpa.g.sc9.377 Carica papaya HOM05D003922 ORTHO05D004492 2.0e-48 196.1 150 64.0
TWI63G0384 Tripterygium wilfordii HOM05D003922 ORTHO05D004492 2.6e-48 195.7 150 63.3
Duzib268G1060 Durio zibethinus HOM05D003922 ORTHO05D004492 3.4e-48 195.3 144 62.5
AL4G26980 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 4.4e-48 194.9 144 63.2
THA.LOC104800922 Tarenaya hassleriana HOM05D003922 ORTHO05D004492 4.4e-48 194.9 150 64.0
CSS0038398 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 5.7e-48 194.5 144 62.5
Potri.013G127400 Populus trichocarpa HOM05D003922 ORTHO05D004492 5.7e-48 194.5 142 66.2
CSS0002835 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 7.5e-48 194.1 144 62.5
Gohir.A09G213608 Gossypium hirsutum HOM05D003922 ORTHO05D004492 7.5e-48 194.1 147 63.3
Gohir.D09G212300 Gossypium hirsutum HOM05D003922 ORTHO05D004492 7.5e-48 194.1 147 63.3
Gorai.006G232100 Gossypium raimondii HOM05D003922 ORTHO05D004492 7.5e-48 194.1 147 63.3
Atru.chr4.1453 Acer truncatum HOM05D003922 ORTHO05D004492 9.8e-48 193.7 143 66.4
Ciclev10022699m.g Citrus clementina HOM05D003922 ORTHO05D004492 9.8e-48 193.7 143 65.7
AT2G31725 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.3e-47 193.4 144 63.9
Cc03_g14390 Coffea canephora HOM05D003922 ORTHO05D004492 1.7e-47 193.0 144 63.9
Thhalv10017374m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 2.8e-47 192.2 144 63.9
Sabra13G0106500 Salix brachista HOM05D003922 ORTHO05D004492 2.8e-47 192.2 142 66.2
Thecc.04G164400 Theobroma cacao HOM05D003922 ORTHO05D004492 3.7e-47 191.8 147 62.6
BcaB02g10413 Brassica carinata HOM05D003922 ORTHO05D004492 4.8e-47 191.4 144 63.9
BcaC07g42112 Brassica carinata HOM05D003922 ORTHO05D004492 6.3e-47 191.0 144 62.5
C04p18050 Brassica napus HOM05D003922 ORTHO05D004492 8.3e-47 190.7 144 63.2
BolC4t23353H Brassica oleracea HOM05D003922 ORTHO05D004492 8.3e-47 190.7 144 63.2
Manes.05G137000 Manihot esculenta HOM05D003922 ORTHO05D004492 8.3e-47 190.7 150 64.0
Thhalv10009017m.g Eutrema salsugineum HOM05D003922 ORTHO05D004492 1.8e-46 189.5 144 62.5
Rhsim09G0008700 Rhododendron simsii HOM05D003922 ORTHO05D004492 1.8e-46 189.5 144 61.1
Sp4g14200 Schrenkiella parvula HOM05D003922 ORTHO05D004492 2.4e-46 189.1 144 62.5
CARHR125410 Cardamine hirsuta HOM05D003922 ORTHO05D004492 3.1e-46 188.7 143 60.8
BcaC02g11282 Brassica carinata HOM05D003922 ORTHO05D004492 4.1e-46 188.3 144 62.5
A09p67310 Brassica napus HOM05D003922 ORTHO05D004492 4.1e-46 188.3 144 61.1
Oeu050329.1 Olea europaea HOM05D003922 ORTHO05D004492 4.1e-46 188.3 144 63.2
GSVIVG01035132001 Vitis vinifera HOM05D003922 ORTHO05D004492 5.4e-46 188.0 144 61.8
AT1G05730 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 1.2e-45 186.8 144 61.1
Dinv18325 Davidia involucrata HOM05D003922 ORTHO05D004492 1.2e-45 186.8 144 62.5
Aa31LG5G5270 Aethionema arabicum HOM05D003922 ORTHO05D004492 1.6e-45 186.4 144 59.7
Lj6A217G7 Lonicera japonica HOM05D003922 ORTHO05D004492 1.6e-45 186.4 144 61.8
COL.COLO4_38113 Corchorus olitorius HOM05D003922 ORTHO05D004492 2.0e-45 186.0 135 65.9
Sp1g04550 Schrenkiella parvula HOM05D003922 ORTHO05D004492 2.0e-45 186.0 144 60.4
EL10Ac3g06102 Beta vulgaris HOM05D003922 ORTHO05D004492 2.7e-45 185.7 143 62.2
PGR142G3702 Punica granatum HOM05D003922 ORTHO05D004492 3.5e-45 185.3 144 61.1
vmacro00688 Vaccinium macrocarpon HOM05D003922 ORTHO05D004492 3.5e-45 185.3 150 59.3
DCAR_005455 Daucus carota HOM05D003922 ORTHO05D004492 5.9e-45 184.5 144 60.4
HanXRQChr11g0343091 Helianthus annuus HOM05D003922 ORTHO05D004492 5.9e-45 184.5 141 61.7
Lsat_1_v5_gn_1_74581 Lactuca sativa HOM05D003922 ORTHO05D004492 5.9e-45 184.5 141 62.4
AL1G15640 Arabidopsis lyrata HOM05D003922 ORTHO05D004492 1.0e-44 183.7 144 59.0
TAR633G0046 Trochodendron aralioides HOM05D003922 ORTHO05D004492 1.3e-44 183.3 143 58.7
BraA05t20315Z Brassica rapa HOM05D003922 ORTHO05D004492 1.7e-44 183.0 156 59.0
Solyc08g014300.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 2.3e-44 182.6 144 57.6
Sopen08g005210 Solanum pennellii HOM05D003922 ORTHO05D004492 2.3e-44 182.6 144 57.6
Carub.0004s1303 Capsella rubella HOM05D003922 ORTHO05D004492 2.9e-44 182.2 143 60.1
PGSC0003DMG400016054 Solanum tuberosum HOM05D003922 ORTHO05D004492 3.8e-44 181.8 144 59.0
Aa31LG1G25440 Aethionema arabicum HOM05D003922 ORTHO05D004492 5.0e-44 181.4 105 84.8
BraA09t42062Z Brassica rapa HOM05D003922 ORTHO05D004492 5.0e-44 181.4 151 58.3
ECA248G0756 Erigeron canadensis HOM05D003922 ORTHO05D004492 6.5e-44 181.0 142 60.6
Eucgr.H00289 Eucalyptus grandis HOM05D003922 ORTHO05D004492 6.5e-44 181.0 144 59.0
CAN.G759.3 Capsicum annuum HOM05D003922 ORTHO05D004492 8.6e-44 180.6 150 58.7
Nn2g13969 Nelumbo nucifera HOM05D003922 ORTHO05D004492 8.6e-44 180.6 141 58.9
CSS0049854 Camellia sinensis var. sinensis HOM05D003922 ORTHO05D004492 1.1e-43 180.3 144 59.0
CARHR005250 Cardamine hirsuta HOM05D003922 ORTHO05D004492 1.9e-43 179.5 143 58.7
FAN21G3935 Fragaria x ananassa HOM05D003922 ORTHO05D004492 2.5e-43 179.1 143 58.0
RcHm_v2.0_Chr4g0405841 Rosa chinensis HOM05D003922 ORTHO05D004492 2.5e-43 179.1 150 56.7
Hund03208 Selenicereus undatus HOM05D003922 ORTHO05D004492 2.5e-43 179.1 143 60.8
BolC8t52690H Brassica oleracea HOM05D003922 ORTHO05D004492 3.3e-43 178.7 154 56.5
FvH4_3g34590 Fragaria vesca HOM05D003922 ORTHO05D004492 5.5e-43 177.9 143 57.3
FAN11G1624 Fragaria x ananassa HOM05D003922 ORTHO05D004492 5.5e-43 177.9 143 57.3
FAN25G1394 Fragaria x ananassa HOM05D003922 ORTHO05D004492 5.5e-43 177.9 143 57.3
FAN02G1921 Fragaria x ananassa HOM05D003922 ORTHO05D004492 9.5e-43 177.2 147 55.8
FAN06G3125 Fragaria x ananassa HOM05D003922 ORTHO05D004492 9.5e-43 177.2 147 55.8
Sc19g0002260 Simmondsia chinensis HOM05D003922 ORTHO05D004492 1.2e-42 176.8 144 59.0
FAN16G1833 Fragaria x ananassa HOM05D003922 ORTHO05D004492 1.6e-42 176.4 143 56.6
Sopen06g018570 Solanum pennellii HOM05D003922 ORTHO05D004492 1.6e-42 176.4 144 59.0
PGSC0003DMG400016330 Solanum tuberosum HOM05D003922 ORTHO05D004492 2.1e-42 176.0 144 57.6
C08p51620 Brassica napus HOM05D003922 ORTHO05D004492 4.7e-42 174.9 155 56.1
Carub.0001s0508 Capsella rubella HOM05D003922 ORTHO05D004492 6.1e-42 174.5 144 56.9
CANSAT56G1338 Cannabis sativa HOM05D003922 ORTHO05D004492 1.0e-41 173.7 140 57.1
CsaV3_5G030170 Cucumis sativus L. HOM05D003922 ORTHO05D004492 1.0e-41 173.7 144 59.7
Phvul.005G007000 Phaseolus vulgaris HOM05D003922 ORTHO05D004492 1.8e-41 172.9 142 57.0
Actinidia27120 Actinidia chinensis HOM05D003922 ORTHO05D004492 2.3e-41 172.6 144 57.6
AUR62002412 Chenopodium quinoa HOM05D003922 ORTHO05D004492 2.3e-41 172.6 141 59.6
MELO3C011855.2 Cucumis melo HOM05D003922 ORTHO05D004492 2.3e-41 172.6 141 60.3
Glyma.06G319900 Glycine max HOM05D003922 ORTHO05D004492 2.3e-41 172.6 142 54.9
ClCG11G013550 Citrullus lanatus HOM05D003922 ORTHO05D004492 3.0e-41 172.2 144 59.0
Os11g0256200 Oryza sativa ssp. japonica HOM05D003922 ORTHO05D004492 4.0e-41 171.8 147 55.1
Cfa015673 Carpinus fangiana HOM05D003922 ORTHO05D004492 5.2e-41 171.4 144 55.6
Sed0023559 Sechium edule HOM05D003922 ORTHO05D004492 5.2e-41 171.4 144 57.6
MSTRG.22037 Avicennia marina HOM05D003922 ORTHO05D004492 6.8e-41 171.0 144 57.6
Glyma.02G058200 Glycine max HOM05D003922 ORTHO05D004492 6.8e-41 171.0 142 54.9
QL10p056544 Quercus lobata HOM05D003922 ORTHO05D004492 6.8e-41 171.0 143 55.9
Peaxi162Scf00075g01329 Petunia axillaris HOM05D003922 ORTHO05D004492 1.2e-40 170.2 144 58.3
Aqoxy2G04156 Aquilegia oxysepala HOM05D003922 ORTHO05D004492 1.5e-40 169.9 145 53.8
Prupe.1G185700 Prunus persica HOM05D003922 ORTHO05D004492 1.5e-40 169.9 140 58.6
MSTRG.24564 Avicennia marina HOM05D003922 ORTHO05D004492 2.0e-40 169.5 150 56.0
MD04G1037100 Malus domestica HOM05D003922 ORTHO05D004492 4.4e-40 168.3 140 55.0
TPR.G16707 Trifolium pratense HOM05D003922 ORTHO05D004492 5.7e-40 167.9 143 54.5
CiPaw.01G168800 Carya illinoinensis HOM05D003922 ORTHO05D004492 7.5e-40 167.5 144 54.2
DCAR_027517 Daucus carota HOM05D003922 ORTHO05D004492 7.5e-40 167.5 143 54.5
PSO017G0931 Papaver somniferum HOM05D003922 ORTHO05D004492 1.3e-39 166.8 142 53.5
Duzib151G1155 Durio zibethinus HOM05D003922 ORTHO05D004492 1.7e-39 166.4 181 49.2
Migut.N03060 Erythranthe guttata HOM05D003922 ORTHO05D004492 1.7e-39 166.4 144 54.9
PSO573G0028 Papaver somniferum HOM05D003922 ORTHO05D004492 1.7e-39 166.4 142 52.8
Ca_14117_v3 Cicer arietinum L. HOM05D003922 ORTHO05D004492 2.8e-39 165.6 143 53.8
Glyma.04G117900 Glycine max HOM05D003922 ORTHO05D004492 3.7e-39 165.2 142 54.2
Lalb_Chr18g0048821 Lupinus albus HOM05D003922 ORTHO05D004492 3.7e-39 165.2 142 53.5
CAN.G1401.2 Capsicum annuum HOM05D003922 ORTHO05D004492 4.9e-39 164.9 141 56.7
VMungo1080G1004 Vigna mungo HOM05D003922 ORTHO05D004492 4.9e-39 164.9 142 54.2
arahy.Tifrunner.gnm1.ann1.D9AT9V Arachis hypogaea HOM05D003922 ORTHO05D004492 6.3e-39 164.5 143 51.7
Psat5g230680 Pisum sativum HOM05D003922 ORTHO05D004492 6.3e-39 164.5 143 54.5
SalBow6G3114 Salvia bowleyana HOM05D003922 ORTHO05D004492 8.3e-39 164.1 142 57.7
Medtr3g009130 Medicago truncatula HOM05D003922 ORTHO05D004492 1.8e-38 162.9 143 51.7
SGA_v2.0_scaffold25G11004 Striga asiatica HOM05D003922 ORTHO05D004492 1.8e-38 162.9 144 53.5
Lj3g0023756 Lotus japonicus HOM05D003922 ORTHO05D004492 2.4e-38 162.5 143 52.4
unitig_578.g16270 Utricularia gibba HOM05D003922 ORTHO05D004492 2.4e-38 162.5 136 55.1
Zm00001eb169120 Zea mays HOM05D003922 ORTHO05D004492 2.4e-38 162.5 139 51.8
CDE09G1276 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 5.4e-38 161.4 140 55.7
Nitab4.5_0004700g0050 Nicotiana tabacum HOM05D003922 ORTHO05D004492 4.5e-37 158.3 164 50.0
SGA_v2.0_scaffold19G08849 Striga asiatica HOM05D003922 ORTHO05D004492 4.5e-37 158.3 155 50.3
Oeu015712.2 Olea europaea HOM05D003922 ORTHO05D004492 1.3e-36 156.8 216 43.1
Zm00001eb169100 Zea mays HOM05D003922 ORTHO05D004492 1.7e-36 156.4 139 53.2
ATR0743G180 Amborella trichopoda HOM05D003922 ORTHO05D004492 8.6e-36 154.1 145 51.0
Peaxi162Scf00579g00013 Petunia axillaris HOM05D003922 ORTHO05D004492 5.6e-35 151.4 142 53.5
Lj6A207G21 Lonicera japonica HOM05D003922 ORTHO05D004492 1.2e-34 150.2 187 45.5
CiPaw.02G099200 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.6e-34 149.8 143 50.3
A05p13780 Brassica napus HOM05D003922 ORTHO05D004492 1.2e-32 143.7 107 62.6
HPP92_023724 Vanilla planifolia HOM05D003922 ORTHO05D004492 2.0e-32 142.9 148 48.0
BcaC07g42114 Brassica carinata HOM05D003922 ORTHO05D004492 6.4e-31 137.9 108 59.3
MBI07_g11491_MAGBIO Magnolia biondii HOM05D003922 ORTHO05D004492 7.8e-29 131.0 142 45.8
arahy.Tifrunner.gnm1.ann1.1Q5EFH Arachis hypogaea HOM05D003922 ORTHO05D004492 1.7e-28 129.8 143 44.1
arahy.Tifrunner.gnm1.ann1.H4TYTD Arachis hypogaea HOM05D003922 ORTHO05D004492 5.0e-28 128.3 147 43.5
BcaC07g42117 Brassica carinata HOM05D003922 ORTHO05D004492 5.0e-28 128.3 145 50.3
Lj3P164T1 Lonicera japonica HOM05D003922 ORTHO05D004492 2.5e-27 125.9 108 52.8
Lju359P1T4 Lonicera japonica HOM05D003922 ORTHO05D004492 2.5e-27 125.9 108 52.8
Nitab4.5_0007474g0040 Nicotiana tabacum HOM05D003922 ORTHO05D004492 1.1e-25 120.6 133 47.4
Glyma.06G288100 Glycine max HOM05D003922 ORTHO05D004492 1.2e-24 117.1 127 47.2
Glyma.06G288300 Glycine max HOM05D003922 ORTHO05D004492 1.2e-24 117.1 127 47.2
Glyma.06G320000 Glycine max HOM05D003922 ORTHO05D004492 2.6e-24 115.9 150 42.0
Solyc06g053490.4 Solanum lycopersicum HOM05D003922 ORTHO05D004492 2.2e-23 112.8 83 62.7
CDE04G0234 Ceratophyllum demersum HOM05D003922 ORTHO05D004492 4.9e-23 111.7 83 60.2
Psat3g002600 Pisum sativum HOM05D003321 ORTHO05D004492 1.1e-22 110.5 80 62.5
Haze_00850 Corylus avellana HOM05D003922 ORTHO05D004492 1.9e-22 109.8 83 56.6
Glyma.06G288000 Glycine max HOM05D003922 ORTHO05D004492 2.1e-21 106.3 149 38.3
Pp3c22_16840 Physcomitrium patens HOM05D003922 ORTHO05D004492 2.7e-21 105.9 137 38.7
Nitab4.5_0000013g0490 Nicotiana tabacum HOM05D003922 ORTHO05D004492 4.6e-21 105.1 83 59.0
Haze_00864 Corylus avellana HOM05D003922 ORTHO05D004492 1.7e-20 103.2 97 49.5
SEGI_40113 Sequoiadendron giganteum HOM05D003922 ORTHO05D004492 3.0e-20 102.4 91 51.6
AagrBONN_evm.TU.Sc2ySwM_228.3693 Anthoceros agrestis HOM05D003922 ORTHO05D004492 4.3e-19 98.6 130 34.6
Carub.0001s0509 Capsella rubella HOM05D003922 ORTHO05D004492 3.6e-18 95.5 91 46.2
SMO174G0123 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 3.6e-18 95.5 130 33.1
arahy.Tifrunner.gnm1.ann1.GG9VXM Arachis hypogaea HOM05D003922 ORTHO05D004492 5.2e-17 91.7 143 35.7
AT1G05740 Arabidopsis thaliana HOM05D003922 ORTHO05D004492 2.6e-16 89.4 97 43.3
SMO174G0129 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 9.9e-16 87.4 141 31.2
SMO116G0121 Selaginella moellendorffii HOM05D003922 ORTHO05D004492 2.9e-15 85.9 107 35.5
arahy.Tifrunner.gnm1.ann1.V6LTI0 Arachis hypogaea HOM05D003922 ORTHO05D004492 5.4e-14 81.6 72 55.6
Lsat_1_v5_gn_3_36701 Lactuca sativa HOM05D003922 ORTHO05D004492 7.1e-14 81.3 101 45.5
Glyma.06G288200 Glycine max HOM05D003922 ORTHO05D004492 1.9e-11 73.2 149 31.5
BcaB05g24674 Brassica carinata HOM05D001689 ORTHO05D004492 4.7e-10 68.6 52 55.8
arahy.Tifrunner.gnm1.ann1.DMY77W Arachis hypogaea HOM05D003922 ORTHO05D004492 3.1e-09 65.9 85 41.2
CBR_g3774 Chara braunii HOM05D003922 ORTHO05D004492 5.2e-09 65.1 129 24.8
Mapoly0006s0297 Marchantia polymorpha HOM05D003922 ORTHO05D004492 1.2e-08 63.9 136 27.9
BcaB05g25136 Brassica carinata HOM05D003922 ORTHO05D004492 1.3e-07 60.5 39 59.0
CiPaw.16G066500 Carya illinoinensis HOM05D003922 ORTHO05D004492 1.4e-06 57.0 81 38.3


User provided reference genes

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