Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G43630 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 1.5e-142 509.6 275 100.0
AL4G42450 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 3.0e-135 485.3 275 94.9
Carub.0004s2616 Capsella rubella HOM05D004353 ORTHO05D004989 1.8e-127 459.5 262 90.5
Thhalv10001554m.g Eutrema salsugineum HOM05D004353 ORTHO05D004989 1.6e-120 436.4 262 84.7
Sp4g25730 Schrenkiella parvula HOM05D004353 ORTHO05D004989 3.5e-115 418.7 263 82.5
CARHR138810 Cardamine hirsuta HOM05D004353 ORTHO05D004989 1.9e-113 412.9 262 81.7
Aa31LG1G25350 Aethionema arabicum HOM05D004353 ORTHO05D004989 5.0e-106 388.3 263 77.2
BraA04t18750Z Brassica rapa HOM05D004353 ORTHO05D004989 2.4e-92 342.8 265 72.5
BcaB06g29332 Brassica carinata HOM05D004353 ORTHO05D004989 1.3e-90 337.0 264 72.3
A04p32910 Brassica napus HOM05D004353 ORTHO05D004989 1.9e-89 333.2 264 69.7
BcaC02g07160 Brassica carinata HOM05D004353 ORTHO05D004989 2.5e-89 332.8 263 69.6
BolC4t28561H Brassica oleracea HOM05D004353 ORTHO05D004989 2.5e-89 332.8 263 69.6
C04p70590 Brassica napus HOM05D004353 ORTHO05D004989 3.6e-88 328.9 265 69.1
Sp5g03540 Schrenkiella parvula HOM05D004353 ORTHO05D004989 2.1e-80 303.1 266 63.5
THA.LOC104803988 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 3.4e-78 295.8 262 59.5
THA.LOC104802322 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 5.4e-76 288.5 263 59.7
A09p51910 Brassica napus HOM05D004353 ORTHO05D004989 1.2e-72 277.3 267 59.6
BraA09t40627Z Brassica rapa HOM05D004353 ORTHO05D004989 2.1e-72 276.6 267 59.2
BcaC07g40494 Brassica carinata HOM05D004353 ORTHO05D004989 3.6e-72 275.8 268 59.7
C08p34630 Brassica napus HOM05D004353 ORTHO05D004989 3.6e-72 275.8 268 59.7
BolC8t51065H Brassica oleracea HOM05D004353 ORTHO05D004989 3.6e-72 275.8 268 59.7
BcaC07g40471 Brassica carinata HOM05D004353 ORTHO05D004989 1.1e-71 274.2 271 57.9
Cpa.g.sc9.354 Carica papaya HOM05D004353 ORTHO05D004989 5.8e-62 241.9 263 51.0
AL5G41660 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 2.4e-60 236.5 236 58.9
AT3G59640 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 3.2e-60 236.1 235 60.0
Gorai.013G257700 Gossypium raimondii HOM05D004353 ORTHO05D004989 5.4e-60 235.3 229 53.7
Gorai.011G261300 Gossypium raimondii HOM05D004353 ORTHO05D004989 1.2e-59 234.2 229 53.7
Gohir.A13G222400 Gossypium hirsutum HOM05D004353 ORTHO05D004989 2.1e-59 233.4 229 53.3
Gohir.D10G228800 Gossypium hirsutum HOM05D004353 ORTHO05D004989 6.0e-59 231.9 229 53.3
Thecc.09G282100 Theobroma cacao HOM05D004353 ORTHO05D004989 2.4e-55 219.9 210 54.3
Gorai.012G140500 Gossypium raimondii HOM05D004353 ORTHO05D004989 4.0e-55 219.2 202 57.9
Carub.0005s2635 Capsella rubella HOM05D004353 ORTHO05D004989 5.3e-55 218.8 235 56.2
Gohir.D13G227200 Gossypium hirsutum HOM05D004353 ORTHO05D004989 4.5e-54 215.7 212 56.6
QL10p054510 Quercus lobata HOM05D004353 ORTHO05D004989 3.8e-53 212.6 265 48.3
QL10p053348 Quercus lobata HOM05D004353 ORTHO05D004989 1.9e-52 210.3 265 48.3
TWI63G0567 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 4.6e-51 205.7 266 45.1
Cfa015265 Carpinus fangiana HOM05D004353 ORTHO05D004989 6.0e-51 205.3 265 43.4
FAN12G3936 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.0e-50 204.5 263 48.7
FvH4_4g10550 Fragaria vesca HOM05D004353 ORTHO05D004989 3.9e-50 202.6 263 48.3
FAN17G1422 Fragaria x ananassa HOM05D004353 ORTHO05D004989 3.9e-50 202.6 263 48.3
FAN07G2673 Fragaria x ananassa HOM05D004353 ORTHO05D004989 5.1e-50 202.2 263 48.3
FAN12G4128 Fragaria x ananassa HOM05D004353 ORTHO05D004989 5.1e-50 202.2 260 48.8
Potri.006G123800 Populus trichocarpa HOM05D004353 ORTHO05D004989 6.7e-50 201.8 259 43.2
Sabra06G0098000 Salix brachista HOM05D004353 ORTHO05D004989 2.5e-49 199.9 258 44.6
Prupe.1G205800 Prunus persica HOM05D004353 ORTHO05D004989 3.3e-49 199.5 218 51.4
RcHm_v2.0_Chr4g0406201 Rosa chinensis HOM05D004353 ORTHO05D004989 7.4e-49 198.4 231 49.4
FAN22G0682 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.3e-48 197.6 263 47.9
CiPaw.02G101000 Carya illinoinensis HOM05D004353 ORTHO05D004989 2.1e-48 196.8 265 45.7
PGR031G1729 Punica granatum HOM05D004353 ORTHO05D004989 3.7e-48 196.1 268 46.6
Manes.11G130500 Manihot esculenta HOM05D004353 ORTHO05D004989 1.4e-47 194.1 259 44.4
Eucgr.A01325 Eucalyptus grandis HOM05D004353 ORTHO05D004989 2.4e-47 193.4 224 51.3
Atru.chr6.1925 Acer truncatum HOM05D004353 ORTHO05D004989 4.0e-47 192.6 194 55.2
Duzib168G0981 Durio zibethinus HOM05D004353 ORTHO05D004989 6.9e-47 191.8 211 49.8
MD08G1231200 Malus domestica HOM05D004353 ORTHO05D004989 1.5e-46 190.7 268 44.0
MD15G1424100 Malus domestica HOM05D004353 ORTHO05D004989 2.0e-46 190.3 266 44.4
CANSAT54G2783 Cannabis sativa HOM05D004353 ORTHO05D004989 3.4e-46 189.5 260 46.5
ClCG03G006580 Citrullus lanatus HOM05D004353 ORTHO05D004989 5.8e-46 188.7 240 49.6
Ciclev10021938m.g Citrus clementina HOM05D004353 ORTHO05D004989 1.3e-45 187.6 250 46.8
Prupe.1G570000 Prunus persica HOM05D004353 ORTHO05D004989 2.9e-45 186.4 249 44.2
AUR62025025 Chenopodium quinoa HOM05D004353 ORTHO05D004989 6.0e-43 178.7 260 44.6
Glyma.09G118100 Glycine max HOM05D004353 ORTHO05D004989 1.3e-42 177.6 268 45.1
Oeu043896.1 Olea europaea HOM05D004353 ORTHO05D004989 3.0e-42 176.4 205 47.3
Glyma.07G165200 Glycine max HOM05D004353 ORTHO05D004989 8.7e-42 174.9 268 44.0
GSVIVG01038129001 Vitis vinifera HOM05D004353 ORTHO05D004989 1.1e-41 174.5 194 51.0
TWI15G0091 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 1.9e-41 173.7 251 45.4
COL.COLO4_19851 Corchorus olitorius HOM05D004353 ORTHO05D004989 4.3e-41 172.6 214 49.1
Hma1.2p1_0017F.1_g011670 Hydrangea macrophylla HOM05D004353 ORTHO05D004989 4.3e-41 172.6 260 42.7
MSTRG.16235 Avicennia marina HOM05D004353 ORTHO05D004989 1.3e-40 171.0 231 48.1
MELO3C002758.2 Cucumis melo HOM05D004353 ORTHO05D004989 6.3e-40 168.7 248 46.0
TAR362G0930 Trochodendron aralioides HOM05D004353 ORTHO05D004989 8.2e-40 168.3 263 44.1
Atru.chr4.1388 Acer truncatum HOM05D004353 ORTHO05D004989 1.4e-39 167.5 221 43.9
Duzib150G0228 Durio zibethinus HOM05D004353 ORTHO05D004989 1.8e-39 167.2 264 40.5
Migut.M00919 Erythranthe guttata HOM05D004353 ORTHO05D004989 1.8e-39 167.2 235 45.1
Lj2g0015848 Lotus japonicus HOM05D004353 ORTHO05D004989 1.8e-39 167.2 264 41.3
Peaxi162Scf00008g03715 Petunia axillaris HOM05D004353 ORTHO05D004989 2.4e-39 166.8 201 47.8
VMungo1215G1727 Vigna mungo HOM05D004353 ORTHO05D004989 3.1e-39 166.4 272 43.0
AUR62006505 Chenopodium quinoa HOM05D004353 ORTHO05D004989 6.9e-39 165.2 257 37.7
CsaV3_1G036770 Cucumis sativus L. HOM05D004353 ORTHO05D004989 4.5e-38 162.5 231 43.7
TAR633G2112 Trochodendron aralioides HOM05D004353 ORTHO05D004989 5.9e-38 162.2 187 50.8
Sed0022603 Sechium edule HOM05D004353 ORTHO05D004989 7.6e-38 161.8 240 42.5
Sc05g0005560 Simmondsia chinensis HOM05D004353 ORTHO05D004989 1.7e-37 160.6 196 45.9
Sed0011106 Sechium edule HOM05D004353 ORTHO05D004989 2.2e-37 160.2 243 44.0
CARHR169980 Cardamine hirsuta HOM05D004353 ORTHO05D004989 2.9e-37 159.8 181 60.2
arahy.Tifrunner.gnm1.ann1.ZXP0UV Arachis hypogaea HOM05D004353 ORTHO05D004989 5.0e-37 159.1 262 37.4
Cc04_g05110 Coffea canephora HOM05D004353 ORTHO05D004989 6.5e-37 158.7 192 50.5
CAN.G162.60 Capsicum annuum HOM05D004353 ORTHO05D004989 6.1e-35 152.1 182 46.7
Phvul.003G023800 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 1.0e-34 151.4 272 41.9
Atru.chr6.1923 Acer truncatum HOM05D004353 ORTHO05D004989 1.8e-34 150.6 106 63.2
Hund04296 Selenicereus undatus HOM05D004353 ORTHO05D004989 3.0e-34 149.8 201 44.8
unitig_61.g26169 Utricularia gibba HOM05D004353 ORTHO05D004989 3.0e-34 149.8 187 46.5
Ah.03g147060 Amaranthus hybridus HOM05D004353 ORTHO05D004989 6.7e-34 148.7 199 44.2
Nitab4.5_0000214g0170 Nicotiana tabacum HOM05D004353 ORTHO05D004989 8.7e-34 148.3 188 47.3
Nitab4.5_0000518g0010 Nicotiana tabacum HOM05D004353 ORTHO05D004989 1.9e-33 147.1 188 47.9
Haze_01374 Corylus avellana HOM05D004353 ORTHO05D004989 4.3e-33 146.0 318 34.9
arahy.Tifrunner.gnm1.ann1.WL5XYL Arachis hypogaea HOM05D004353 ORTHO05D004989 1.3e-32 144.4 262 36.6
Solyc04g054460.3 Solanum lycopersicum HOM05D004353 ORTHO05D004989 1.6e-32 144.1 230 41.7
Sopen04g024280 Solanum pennellii HOM05D004353 ORTHO05D004989 2.2e-32 143.7 230 41.7
PSO017G5600 Papaver somniferum HOM05D004353 ORTHO05D004989 2.8e-32 143.3 197 44.7
PSO675G4101 Papaver somniferum HOM05D004353 ORTHO05D004989 2.8e-32 143.3 201 42.8
HanXRQChr10g0307981 Helianthus annuus HOM05D004353 ORTHO05D004989 1.1e-31 141.4 194 47.9
RcHm_v2.0_Chr2g0115921 Rosa chinensis HOM05D004353 ORTHO05D004989 2.4e-31 140.2 235 43.0
Gorai.012G140700 Gossypium raimondii HOM05D004353 ORTHO05D004989 5.3e-31 139.0 99 59.6
Lalb_Chr02g0158251 Lupinus albus HOM05D004353 ORTHO05D004989 1.5e-30 137.5 226 43.4
EL10Ac6g15412 Beta vulgaris HOM05D004353 ORTHO05D004989 2.6e-30 136.7 196 45.4
Ca_17991_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 2.6e-30 136.7 201 41.3
BcaB02g08913 Brassica carinata HOM05D004353 ORTHO05D004989 3.4e-30 136.3 190 46.8
DCAR_005473 Daucus carota HOM05D004353 ORTHO05D004989 3.4e-30 136.3 264 39.8
C04p04620 Brassica napus HOM05D004353 ORTHO05D004989 7.7e-30 135.2 87 74.7
SalBow8G1390 Salvia bowleyana HOM05D004353 ORTHO05D004989 1.3e-29 134.4 245 40.8
Gorai.013G194600 Gossypium raimondii HOM05D004353 ORTHO05D004989 1.7e-29 134.0 256 39.5
ATR0743G161 Amborella trichopoda HOM05D004353 ORTHO05D004989 5.0e-29 132.5 195 43.6
Aqoxy3G00280 Aquilegia oxysepala HOM05D004353 ORTHO05D004989 5.0e-29 132.5 184 44.0
MBI08_g25559_MAGBIO Magnolia biondii HOM05D004353 ORTHO05D004989 8.5e-29 131.7 165 52.1
FAN19G0170 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.9e-28 130.6 241 39.4
ECA248G0230 Erigeron canadensis HOM05D004353 ORTHO05D004989 2.5e-28 130.2 281 36.7
FAN28G0555 Fragaria x ananassa HOM05D004353 ORTHO05D004989 2.1e-27 127.1 228 40.8
SGA_v2.0_scaffold1G00163 Striga asiatica HOM05D004353 ORTHO05D004989 2.7e-27 126.7 222 41.9
Lalb_Chr10g0096191 Lupinus albus HOM05D004353 ORTHO05D004989 4.6e-27 125.9 184 45.7
Lalb_Chr22g0353411 Lupinus albus HOM05D004353 ORTHO05D004989 4.6e-27 125.9 202 40.1
BolC4t22093H Brassica oleracea HOM05D004353 ORTHO05D004989 7.9e-27 125.2 87 72.4
Lalb_Chr21g0317861 Lupinus albus HOM05D004353 ORTHO05D004989 6.7e-26 122.1 234 41.0
MSTRG.19791 Avicennia marina HOM05D004353 ORTHO05D004989 2.5e-25 120.2 110 52.7
FvH4_1g21910 Fragaria vesca HOM05D004353 ORTHO05D004989 2.5e-25 120.2 169 45.0
BcaC02g12375 Brassica carinata HOM05D004353 ORTHO05D004989 7.4e-25 118.6 203 39.4
PGSC0003DMG400005514 Solanum tuberosum HOM05D004353 ORTHO05D004989 2.2e-24 117.1 159 46.5
Ca_13736_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 8.2e-24 115.2 261 33.7
Ca_02292_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 2.4e-23 113.6 261 33.7
FAN26G0137 Fragaria x ananassa HOM05D004353 ORTHO05D004989 6.9e-23 112.1 169 41.4
Medtr6g012760 Medicago truncatula HOM05D004353 ORTHO05D004989 6.9e-23 112.1 274 34.3
Psat1g079080 Pisum sativum HOM05D004353 ORTHO05D004989 9.1e-23 111.7 262 35.9
Medtr1g030860 Medicago truncatula HOM05D004353 ORTHO05D004989 2.0e-22 110.5 186 38.7
Nitab4.5_0001095g0110 Nicotiana tabacum HOM05D004353 ORTHO05D004989 3.4e-22 109.8 140 42.1
Lsat_1_v5_gn_5_149741 Lactuca sativa HOM05D004353 ORTHO05D004989 5.9e-22 109.0 271 33.2
Medtr8g077030 Medicago truncatula HOM05D000149 ORTHO05D004989 2.5e-20 103.6 198 40.4
TPR.G8801 Trifolium pratense HOM05D004353 ORTHO05D004989 7.2e-20 102.1 261 34.1
Psat6g042920 Pisum sativum HOM05D004353 ORTHO05D004989 2.7e-19 100.1 186 34.9
SHI23072 Sapria himalayana HOM05D004353 ORTHO05D004989 4.7e-19 99.4 173 40.5
CDE05G3235 Ceratophyllum demersum HOM05D004353 ORTHO05D004989 7.9e-19 98.6 135 51.9
Lj2g0004083 Lotus japonicus HOM05D004353 ORTHO05D004989 1.4e-18 97.8 242 37.2
arahy.Tifrunner.gnm1.ann1.I4T7AK Arachis hypogaea HOM05D004353 ORTHO05D004989 3.0e-18 96.7 219 36.5
Os02g0606000 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 6.7e-18 95.5 198 33.8
TPR.G36930 Trifolium pratense HOM05D004353 ORTHO05D004989 8.8e-18 95.1 171 39.8
arahy.Tifrunner.gnm1.ann1.35HMJH Arachis hypogaea HOM05D004353 ORTHO05D004989 2.0e-17 94.0 219 36.1
Zm00001eb246630 Zea mays HOM05D004353 ORTHO05D004989 3.3e-17 93.2 187 33.7
Dinv40298 Davidia involucrata HOM05D004353 ORTHO05D004989 1.7e-16 90.9 185 35.7
CARHR170000 Cardamine hirsuta HOM05D004353 ORTHO05D004989 6.3e-16 89.0 127 44.9
Nn1g09685 Nelumbo nucifera HOM05D004353 ORTHO05D004989 1.4e-15 87.8 84 44.0
VMungo0540G0595 Vigna mungo HOM05D004353 ORTHO05D004989 7.0e-15 85.5 222 34.2
Phvul.006G120600 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 2.0e-14 84.0 207 35.3
Zm00001eb184150 Zea mays HOM05D004353 ORTHO05D004989 2.0e-14 84.0 189 36.0
Glyma.09G032300 Glycine max HOM05D004353 ORTHO05D004989 1.3e-13 81.3 263 35.4
AUR62039440 Chenopodium quinoa HOM05D004353 ORTHO05D004989 2.9e-13 80.1 66 51.5
C08p34640 Brassica napus HOM05D004353 ORTHO05D004989 3.8e-13 79.7 54 64.8
HPP92_005597 Vanilla planifolia HOM05D004353 ORTHO05D004989 2.5e-12 77.0 198 33.3
HPP92_005578 Vanilla planifolia HOM05D004353 ORTHO05D004989 4.2e-12 76.3 177 35.0
Actinidia06605 Actinidia chinensis HOM05D004353 ORTHO05D004989 9.4e-12 75.1 154 37.0
Os04g0493300 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 6.1e-11 72.4 154 37.7
Atru.chr4.262 Acer truncatum HOM05D004353 ORTHO05D004989 5.7e-09 65.9 103 49.5
Glyma.15G137300 Glycine max HOM05D004353 ORTHO05D004989 9.7e-09 65.1 196 35.2
MD10G1168700 Malus domestica HOM05D004353 ORTHO05D004989 3.7e-08 63.2 121 35.5


User provided reference genes

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