Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G43540 Arabidopsis thaliana HOM05D007459 ORTHO05D009234 5.2e-85 317.8 170 100.0
AL4G42340 Arabidopsis lyrata HOM05D007459 ORTHO05D009234 4.0e-77 291.6 170 91.8
Thhalv10001662m.g Eutrema salsugineum HOM05D007459 ORTHO05D009234 2.0e-73 279.3 171 86.5
Carub.0004s2600 Capsella rubella HOM05D007459 ORTHO05D009234 3.5e-73 278.5 173 85.5
Sp4g25650 Schrenkiella parvula HOM05D007459 ORTHO05D009234 4.7e-70 268.1 174 82.8
A04p32820 Brassica napus HOM05D007459 ORTHO05D009234 7.5e-68 260.8 170 82.9
BraA04t18744Z Brassica rapa HOM05D007459 ORTHO05D009234 7.5e-68 260.8 170 82.9
CARHR138660 Cardamine hirsuta HOM05D007459 ORTHO05D009234 9.8e-68 260.4 171 81.3
C04p70510 Brassica napus HOM05D007459 ORTHO05D009234 6.3e-67 257.7 170 82.9
BcaB06g29324 Brassica carinata HOM05D007459 ORTHO05D009234 5.4e-66 254.6 170 81.2
BcaC02g07169 Brassica carinata HOM05D007459 ORTHO05D009234 1.2e-65 253.4 170 81.2
BcaC02g07170 Brassica carinata HOM05D007459 ORTHO05D009234 1.2e-65 253.4 170 81.2
BolC4t28553H Brassica oleracea HOM05D007459 ORTHO05D009234 1.2e-65 253.4 170 81.2
BolC4t28554H Brassica oleracea HOM05D007459 ORTHO05D009234 9.5e-63 243.8 160 82.5
C04p70520 Brassica napus HOM05D007459 ORTHO05D009234 2.1e-62 242.7 160 81.9
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 6.8e-61 237.7 167 73.1
THA.LOC104805901 Tarenaya hassleriana HOM05D007459 ORTHO05D009234 7.0e-58 227.6 174 70.1
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 2.5e-55 219.2 145 82.1
Haze_01404 Corylus avellana HOM05D007459 ORTHO05D009234 2.2e-51 206.1 169 64.5
QL10p052586 Quercus lobata HOM05D007459 ORTHO05D009234 2.4e-50 202.6 172 64.0
CiPaw.01G173000 Carya illinoinensis HOM05D007459 ORTHO05D009234 5.4e-50 201.4 173 61.3
Cfa015229 Carpinus fangiana HOM05D007459 ORTHO05D009234 9.2e-50 200.7 169 62.7
Haze_01410 Corylus avellana HOM05D007459 ORTHO05D009234 9.2e-50 200.7 169 63.3
Duzib151G0483 Durio zibethinus HOM05D007459 ORTHO05D009234 6.8e-45 184.5 174 58.6
Manes.04G050800 Manihot esculenta HOM05D007459 ORTHO05D009234 6.8e-45 184.5 170 60.6
PGR142G0909 Punica granatum HOM05D007459 ORTHO05D009234 6.8e-45 184.5 175 56.6
MD04G1047100 Malus domestica HOM05D007459 ORTHO05D009234 4.4e-44 181.8 169 58.0
Prupe.1G201700 Prunus persica HOM05D007459 ORTHO05D009234 5.8e-44 181.4 169 58.0
MELO3C017778.2 Cucumis melo HOM05D007459 ORTHO05D009234 1.3e-43 180.3 169 56.8
Ciclev10022478m.g Citrus clementina HOM05D007459 ORTHO05D009234 3.7e-43 178.7 182 53.8
Lj6A129T18 Lonicera japonica HOM05D007459 ORTHO05D009234 3.7e-43 178.7 173 54.3
TAR362G1157 Trochodendron aralioides HOM05D007459 ORTHO05D009234 1.4e-42 176.8 170 54.7
Sabra07G0109100 Salix brachista HOM05D007459 ORTHO05D009234 1.9e-42 176.4 174 54.0
CANSAT56G1213 Cannabis sativa HOM05D007459 ORTHO05D009234 2.4e-42 176.0 171 56.1
Solyc06g073170.1 Solanum lycopersicum HOM05D007459 ORTHO05D009234 2.4e-42 176.0 168 56.0
Sopen06g029540 Solanum pennellii HOM05D007459 ORTHO05D009234 2.4e-42 176.0 168 56.0
Thecc.04G171000 Theobroma cacao HOM05D007459 ORTHO05D009234 2.4e-42 176.0 174 56.3
Cc03_g12180 Coffea canephora HOM05D007459 ORTHO05D009234 3.2e-42 175.6 174 50.0
Hma1.2p1_2359F.1_g320593 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 3.2e-42 175.6 170 53.5
PGSC0003DMG400027018 Solanum tuberosum HOM05D007459 ORTHO05D009234 3.2e-42 175.6 168 56.0
TWI38G0757 Tripterygium wilfordii HOM05D007459 ORTHO05D009234 3.2e-42 175.6 159 58.5
Nitab4.5_0013525g0010 Nicotiana tabacum HOM05D007459 ORTHO05D009234 9.2e-42 174.1 169 54.4
RcHm_v2.0_Chr2g0138101 Rosa chinensis HOM05D007459 ORTHO05D009234 9.2e-42 174.1 169 53.3
Nn1g09730 Nelumbo nucifera HOM05D007459 ORTHO05D009234 1.2e-41 173.7 170 51.8
Gohir.A02G092500 Gossypium hirsutum HOM05D007459 ORTHO05D009234 2.0e-41 172.9 174 54.6
CSS0017730 Camellia sinensis var. sinensis HOM05D007459 ORTHO05D009234 3.5e-41 172.2 171 52.0
Potri.007G134400 Populus trichocarpa HOM05D007459 ORTHO05D009234 3.5e-41 172.2 174 52.9
Haze_01399 Corylus avellana HOM05D007459 ORTHO05D009234 4.6e-41 171.8 154 59.1
Gohir.D02G110600 Gossypium hirsutum HOM05D007459 ORTHO05D009234 6.0e-41 171.4 174 54.0
Gorai.005G125500 Gossypium raimondii HOM05D007459 ORTHO05D009234 6.0e-41 171.4 174 54.0
Dinv44169 Davidia involucrata HOM05D007459 ORTHO05D009234 7.8e-41 171.0 170 53.5
Hma1.2p1_0554F.1_g177940 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 7.8e-41 171.0 170 51.8
Atru.chr4.1350 Acer truncatum HOM05D007459 ORTHO05D009234 1.0e-40 170.6 172 52.3
Peaxi162Scf00180g00063 Petunia axillaris HOM05D007459 ORTHO05D009234 1.0e-40 170.6 167 53.9
CsaV3_4G002640 Cucumis sativus L. HOM05D007459 ORTHO05D009234 3.0e-40 169.1 164 56.1
Lalb_Chr22g0352011 Lupinus albus HOM05D007459 ORTHO05D009234 1.5e-39 166.8 169 50.3
Nitab4.5_0002553g0080 Nicotiana tabacum HOM05D007459 ORTHO05D009234 4.3e-39 165.2 169 53.3
FvH4_6g31340 Fragaria vesca HOM05D007459 ORTHO05D009234 7.3e-39 164.5 168 53.0
FAN05G5726 Fragaria x ananassa HOM05D007459 ORTHO05D009234 7.3e-39 164.5 168 53.0
FAN14G2685 Fragaria x ananassa HOM05D007459 ORTHO05D009234 7.3e-39 164.5 168 53.0
Sed0000488 Sechium edule HOM05D007459 ORTHO05D009234 9.5e-39 164.1 169 53.8
Sc06g0007410 Simmondsia chinensis HOM05D007459 ORTHO05D009234 1.6e-38 163.3 168 52.4
SGA_v2.0_scaffold25G10994 Striga asiatica HOM05D007459 ORTHO05D009234 4.7e-38 161.8 173 52.6
COL.COLO4_28394 Corchorus olitorius HOM05D007459 ORTHO05D009234 6.2e-38 161.4 175 53.1
Lsat_1_v5_gn_8_158021 Lactuca sativa HOM05D007459 ORTHO05D009234 8.9e-37 157.5 167 47.9
unitig_85.g27223 Utricularia gibba HOM05D007459 ORTHO05D009234 5.8e-36 154.8 168 50.0
vmacro06567 Vaccinium macrocarpon HOM05D007459 ORTHO05D009234 1.3e-35 153.7 175 49.1
HanXRQChr14g0433791 Helianthus annuus HOM05D007459 ORTHO05D009234 2.2e-35 152.9 166 45.8
Psat5g291760 Pisum sativum HOM05D007459 ORTHO05D009234 8.3e-35 151.0 170 49.4
Rhsim09G0013300 Rhododendron simsii HOM05D007459 ORTHO05D009234 1.1e-34 150.6 173 46.8
Migut.N03078 Erythranthe guttata HOM05D007459 ORTHO05D009234 1.4e-34 150.2 170 49.4
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 2.7e-33 146.0 160 50.0
TPR.G13012 Trifolium pratense HOM05D007459 ORTHO05D009234 1.3e-32 143.7 170 47.6
Lj3g0013618 Lotus japonicus HOM05D007459 ORTHO05D009234 1.7e-32 143.3 170 47.6
TPR.G6565 Trifolium pratense HOM05D007459 ORTHO05D009234 2.3e-32 142.9 168 47.6
Ca_01236_v3 Cicer arietinum L. HOM05D007459 ORTHO05D009234 6.6e-32 141.4 172 46.5
Phvul.005G155700 Phaseolus vulgaris HOM05D007459 ORTHO05D009234 1.1e-31 140.6 166 45.8
Medtr2g099440 Medicago truncatula HOM05D007459 ORTHO05D009234 3.6e-30 135.6 170 45.9
Os04g0495300 Oryza sativa ssp. japonica HOM05D007459 ORTHO05D009234 6.2e-30 134.8 167 42.5
Glyma.13G346600 Glycine max HOM05D007459 ORTHO05D009234 2.3e-29 132.9 168 44.6
EL10Ac3g06032 Beta vulgaris HOM05D007459 ORTHO05D009234 4.4e-28 128.6 169 45.0
HPP92_004524 Vanilla planifolia HOM05D007459 ORTHO05D009234 2.2e-27 126.3 167 44.3
DCAR_028411 Daucus carota HOM05D007459 ORTHO05D009234 2.9e-27 125.9 166 41.6
ClCG07G015090 Citrullus lanatus HOM05D007459 ORTHO05D009234 6.4e-27 124.8 168 44.6
Actinidia27099 Actinidia chinensis HOM05D007459 ORTHO05D009234 1.9e-26 123.2 142 47.9
Zm00001eb078650 Zea mays HOM05D007459 ORTHO05D009234 1.9e-26 123.2 167 45.5
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 2.4e-26 122.9 151 44.4
ATR0743G068 Amborella trichopoda HOM05D007459 ORTHO05D009234 6.0e-25 118.2 168 43.5
AUR62002368 Chenopodium quinoa HOM05D007459 ORTHO05D009234 6.0e-25 118.2 168 42.3
Duzib151G0582 Durio zibethinus HOM05D007459 ORTHO05D009234 1.1e-23 114.0 123 53.7
AUR62023818 Chenopodium quinoa HOM05D007459 ORTHO05D009234 1.5e-23 113.6 168 41.1
Eucgr.L02147 Eucalyptus grandis HOM05D007459 ORTHO05D009234 1.2e-22 110.5 146 43.8
HPP92_004533 Vanilla planifolia HOM05D007459 ORTHO05D009234 1.3e-19 100.5 130 46.2
Ah.07g202500 Amaranthus hybridus HOM05D007459 ORTHO05D009234 1.2e-17 94.0 169 37.3
EL10Ac9g22812 Beta vulgaris HOM05D007459 ORTHO05D009234 3.5e-17 92.4 151 40.4
EL10Ac5g11171 Beta vulgaris HOM05D007459 ORTHO05D009234 1.0e-16 90.9 111 45.0
SEGI_40343 Sequoiadendron giganteum HOM05D007459 ORTHO05D009234 1.8e-13 80.1 135 38.5
EL10Ac4g10228 Beta vulgaris HOM05D007459 ORTHO05D009234 1.3e-11 73.9 138 32.6
Pp3c17_9330 Physcomitrium patens HOM05D007459 ORTHO05D009234 1.4e-10 70.5 138 32.6
EL10Ac6g13927 Beta vulgaris HOM05D000045 ORTHO05D010054 1.9e-10 70.1 89 47.2
ECA238G4467 Erigeron canadensis HOM05D007459 ORTHO05D009234 2.1e-09 66.6 72 45.8
Mapoly0038s0008 Marchantia polymorpha HOM05D007459 ORTHO05D009234 2.1e-09 66.6 142 29.6
EL10Ac3g06136 Beta vulgaris HOM05D007459 ORTHO05D009234 1.9e-07 60.1 87 41.4


User provided reference genes

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