Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G43310 Arabidopsis thaliana HOM05D007749 ORTHO05D009809 6.3e-70 267.3 134 100.0
CARHR138400 Cardamine hirsuta HOM05D007749 ORTHO05D009809 2.1e-65 252.3 134 94.0
AL4G41990 Arabidopsis lyrata HOM05D007749 ORTHO05D009809 1.8e-64 249.2 134 91.8
Thhalv10001764m.g Eutrema salsugineum HOM05D007749 ORTHO05D009809 1.8e-61 239.2 134 90.3
Sp4g25410 Schrenkiella parvula HOM05D007749 ORTHO05D009809 9.1e-61 236.9 134 88.8
C04p70340 Brassica napus HOM05D007749 ORTHO05D009809 1.2e-60 236.5 125 92.8
BolC4t28537H Brassica oleracea HOM05D007749 ORTHO05D009809 1.2e-60 236.5 125 92.8
BcaC02g07190 Brassica carinata HOM05D007749 ORTHO05D009809 2.6e-60 235.3 125 92.0
BraA04t18728Z Brassica rapa HOM05D007749 ORTHO05D009809 2.6e-60 235.3 125 92.0
BcaB06g29301 Brassica carinata HOM05D007749 ORTHO05D009809 4.5e-60 234.6 125 92.0
A04p32650 Brassica napus HOM05D007749 ORTHO05D009809 4.5e-60 234.6 125 92.0
Carub.0004s2577 Capsella rubella HOM05D007749 ORTHO05D009809 5.9e-60 234.2 135 87.4
Aa31LG1G25110 Aethionema arabicum HOM05D007749 ORTHO05D009809 6.5e-59 230.7 134 86.6
THA.LOC104803661 Tarenaya hassleriana HOM05D007749 ORTHO05D009809 4.2e-50 201.4 125 78.4
BcaB06g29300 Brassica carinata HOM05D007749 ORTHO05D009809 1.7e-46 189.5 100 93.0
Manes.11G120200 Manihot esculenta HOM05D007749 ORTHO05D009809 2.8e-41 172.2 125 65.6
Sed0008576 Sechium edule HOM05D007749 ORTHO05D009809 4.7e-41 171.4 119 70.6
MD04G1040200 Malus domestica HOM05D007749 ORTHO05D009809 5.2e-40 167.9 116 70.7
CsaV3_6G003910 Cucumis sativus L. HOM05D007749 ORTHO05D009809 6.8e-40 167.5 118 70.3
ClCG08G004660 Citrullus lanatus HOM05D007749 ORTHO05D009809 1.2e-39 166.8 118 68.6
MELO3C011656.2 Cucumis melo HOM05D007749 ORTHO05D009809 2.6e-39 165.6 123 68.3
Gohir.A10G136900 Gossypium hirsutum HOM05D007749 ORTHO05D009809 1.3e-38 163.3 125 61.6
COL.COLO4_07660 Corchorus olitorius HOM05D007749 ORTHO05D009809 1.7e-38 162.9 120 65.0
Gorai.011G143100 Gossypium raimondii HOM05D007749 ORTHO05D009809 1.7e-38 162.9 125 61.6
Gohir.D10G129800 Gossypium hirsutum HOM05D007749 ORTHO05D009809 2.2e-38 162.5 125 61.6
Thecc.04G180100 Theobroma cacao HOM05D007749 ORTHO05D009809 2.2e-38 162.5 125 60.8
GSVIVG01010752001 Vitis vinifera HOM05D007749 ORTHO05D009809 2.9e-38 162.2 114 69.3
CANSAT56G0324 Cannabis sativa HOM05D007749 ORTHO05D009809 6.4e-38 161.0 122 63.9
CANSAT56G2176 Cannabis sativa HOM05D007749 ORTHO05D009809 6.4e-38 161.0 122 63.9
TAR633G0982 Trochodendron aralioides HOM05D007749 ORTHO05D009809 2.4e-37 159.1 119 64.7
Duzib151G1147 Durio zibethinus HOM05D007749 ORTHO05D009809 4.1e-37 158.3 125 60.8
AUR62005121 Chenopodium quinoa HOM05D007749 ORTHO05D009809 5.4e-37 157.9 115 64.3
AUR62000855 Chenopodium quinoa HOM05D007749 ORTHO05D009809 9.2e-37 157.1 115 64.3
Dinv44193 Davidia involucrata HOM05D006659 ORTHO05D008372 9.2e-37 157.1 122 63.1
Lj3g0008958 Lotus japonicus HOM05D007749 ORTHO05D009809 9.2e-37 157.1 120 64.2
PGR142G0736 Punica granatum HOM05D007749 ORTHO05D009809 9.2e-37 157.1 124 65.3
TWI15G0305 Tripterygium wilfordii HOM05D007749 ORTHO05D009809 9.2e-37 157.1 125 60.0
TWI15G0741 Tripterygium wilfordii HOM05D007749 ORTHO05D009809 9.2e-37 157.1 125 60.0
Sabra07G0104500 Salix brachista HOM05D007749 ORTHO05D009809 3.5e-36 155.2 121 66.1
Eucgr.H00373 Eucalyptus grandis HOM05D007749 ORTHO05D009809 7.8e-36 154.1 122 64.8
Psat1g007040 Pisum sativum HOM05D007749 ORTHO05D009809 1.0e-35 153.7 118 64.4
Oeu037445.1 Olea europaea HOM05D007749 ORTHO05D009809 1.3e-35 153.3 119 61.3
QL10p048728 Quercus lobata HOM05D007749 ORTHO05D009809 2.3e-35 152.5 119 63.9
CDE04G2919 Ceratophyllum demersum HOM05D007749 ORTHO05D009809 3.9e-35 151.8 116 62.9
CDE07G1555 Ceratophyllum demersum HOM05D007749 ORTHO05D009809 8.6e-35 150.6 116 62.9
Glyma.13G344000 Glycine max HOM05D007749 ORTHO05D009809 1.5e-34 149.8 116 63.8
Atru.chr3.1496 Acer truncatum HOM05D007749 ORTHO05D009809 1.9e-34 149.4 125 59.2
Medtr2g098870 Medicago truncatula HOM05D007749 ORTHO05D009809 4.3e-34 148.3 119 61.3
Lalb_Chr14g0372461 Lupinus albus HOM05D007749 ORTHO05D009809 9.5e-34 147.1 118 62.7
Potri.017G030200 Populus trichocarpa HOM05D007749 ORTHO05D009809 9.5e-34 147.1 123 65.9
Lsat_1_v5_gn_5_23460 Lactuca sativa HOM05D007749 ORTHO05D009809 1.6e-33 146.4 122 57.4
Rhsim09G0028100 Rhododendron simsii HOM05D007749 ORTHO05D009809 2.1e-33 146.0 115 61.7
Phvul.005G152700 Phaseolus vulgaris HOM05D007749 ORTHO05D009809 2.8e-33 145.6 121 64.5
Migut.B01511 Erythranthe guttata HOM05D007749 ORTHO05D009809 4.7e-33 144.8 116 62.1
CiPaw.02G055000 Carya illinoinensis HOM05D007749 ORTHO05D009809 6.2e-33 144.4 120 60.0
Potri.007G128100 Populus trichocarpa HOM05D007749 ORTHO05D009809 8.0e-33 144.1 121 63.6
VMungo1080G1081 Vigna mungo HOM05D007749 ORTHO05D009809 8.0e-33 144.1 121 62.8
PGSC0003DMG400020513 Solanum tuberosum HOM05D007749 ORTHO05D009809 6.8e-32 141.0 115 60.0
ECA246G4014 Erigeron canadensis HOM05D007749 ORTHO05D009809 8.9e-32 140.6 119 58.0
SGA_v2.0_scaffold52G19242 Striga asiatica HOM05D007749 ORTHO05D009809 8.9e-32 140.6 119 60.5
SalBow7G2644 Salvia bowleyana HOM05D007749 ORTHO05D009809 4.4e-31 138.3 115 60.0
Sopen08g003040 Solanum pennellii HOM05D007749 ORTHO05D009809 7.5e-31 137.5 115 58.3
MD07G1093600 Malus domestica HOM05D007749 ORTHO05D009809 1.3e-30 136.7 100 68.0
CAN.G845.29 Capsicum annuum HOM05D007749 ORTHO05D009809 1.7e-30 136.3 120 60.0
Nitab4.5_0005487g0020 Nicotiana tabacum HOM05D002689 ORTHO05D003129 2.2e-30 136.0 115 60.0
DCAR_008501 Daucus carota HOM05D007749 ORTHO05D009809 4.9e-30 134.8 120 53.3
FvH4_4g10741 Fragaria vesca HOM05D007749 ORTHO05D009809 4.9e-30 134.8 116 60.3
HanXRQChr02g0051151 Helianthus annuus HOM05D007749 ORTHO05D009809 8.3e-30 134.0 124 52.4
unitig_61.g26426 Utricularia gibba HOM05D007749 ORTHO05D009809 8.3e-30 134.0 115 54.8
Prupe.1G192700 Prunus persica HOM05D007749 ORTHO05D009809 1.1e-29 133.7 104 66.3
Cc00_g14450 Coffea canephora HOM05D007749 ORTHO05D009809 1.4e-29 133.3 124 54.0
MD07G1010900 Malus domestica HOM05D007749 ORTHO05D009809 5.4e-29 131.3 107 62.6
Sc25g0002390 Simmondsia chinensis HOM05D007749 ORTHO05D009809 5.4e-29 131.3 93 67.7
Aqoxy7G01786 Aquilegia oxysepala HOM05D007749 ORTHO05D009809 2.0e-28 129.4 116 54.3
Ciclev10022681m.g Citrus clementina HOM05D007749 ORTHO05D009809 2.0e-28 129.4 118 57.6
Aqoxy7G01782 Aquilegia oxysepala HOM05D007749 ORTHO05D009809 3.5e-28 128.6 116 54.3
HPP92_012796 Vanilla planifolia HOM05D007749 ORTHO05D009809 3.9e-27 125.2 123 53.7
Glyma.15G030300 Glycine max HOM05D007749 ORTHO05D009809 1.2e-25 120.2 105 59.0
Ca_01260_v3 Cicer arietinum L. HOM05D007749 ORTHO05D009809 6.2e-25 117.9 92 62.0
ATR0824G043 Amborella trichopoda HOM05D007749 ORTHO05D009809 1.8e-24 116.3 110 49.1
Sc04g0006060 Simmondsia chinensis HOM05D007749 ORTHO05D009809 8.9e-24 114.0 95 60.0
Prupe.1G193800 Prunus persica HOM05D007749 ORTHO05D009809 4.4e-23 111.7 89 60.7
PGSC0003DMG400020496 Solanum tuberosum HOM05D007749 ORTHO05D009809 4.9e-22 108.2 89 58.4
QL02p093050 Quercus lobata HOM05D000759 ORTHO05D000574 4.1e-21 105.1 100 54.0
Actinidia35976 Actinidia chinensis HOM05D007749 ORTHO05D009809 1.2e-20 103.6 122 49.2
Actinidia34603 Actinidia chinensis HOM05D007749 ORTHO05D009809 2.7e-20 102.4 130 46.2
Nitab4.5_0010461g0010 Nicotiana tabacum HOM05D002689 ORTHO05D003129 2.1e-17 92.8 77 58.4
QL04p015298 Quercus lobata HOM05D007749 ORTHO05D009809 4.7e-17 91.7 89 52.8
HPP92_012728 Vanilla planifolia HOM05D007749 ORTHO05D009809 8.9e-16 87.4 125 45.6
SEGI_37948 Sequoiadendron giganteum HOM05D007749 ORTHO05D009809 2.4e-13 79.3 113 34.5
MD08G1180100 Malus domestica HOM05D007749 ORTHO05D009809 3.3e-10 68.9 56 66.1
vmacro02359 Vaccinium macrocarpon HOM05D007749 ORTHO05D009809 8.9e-08 60.8 69 46.4
SEGI_10158 Sequoiadendron giganteum HOM05D007749 ORTHO05D009809 4.9e-06 55.1 80 33.8


User provided reference genes

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